Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004663.1

Orthogroup ID

OG0004091

Physical Location & Seq

Genomic Coordinates Reverse (-)

35398 .. 38525

Gene Structure 3128 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3036 bp

atggcactcatgcatggagtctcacttacgcattcccatcttcaaagtccattcacccactcttcgtctgtcaactccatcatgccattacccaaaaaccaccacctccatctctacctcctcttcttcctcttcctcctctccaacgccgccgcagccgacgagcttcaaatcctactaaaactcaaatcctccctccaggactcaaactcccaactcttcgccacatgggactccaccgccaattcgttttgcaaattcaccggaatcacctgcaacgtcgtcggttcggttcgagaaatcgaactttctaaccagaagctatcggggtctcttccgttggactccatatgccaacttccctcattagaaaagctcgctttcgggtccaatttcctgcacggtacaatcacggaggacttgagaaactgtacgaagctgaaatacctggatttggcgaaaaacttgttcgcgggttcattccctgacatatcttccttgtcccaactggagcatcttcatctgaacggcagctggttttccgggattttcccgtggacttccctcaccaacatgactggtctgattcgtttgagcttgggtgacaacccgtttgatccgagcccgtttccaaaggaagttgtaaatcttaacaagctcgagtggctctacttggcaaactgcagcatccaaggaacaataccaagtgaaatcgggaacttggtcgagcttatcaacctggagttgtccgataacaacatgaccggagaaattccggccgagattggacagctcaccaagctctggcagctggagctctacaccaacaggttcaccggaaagcttcctttcgggctaagaaacctcaccattctcgagaacttcgacgcctctgagaattttctggaaggcgatttgaacgagttgaggtttctgaccaacttggtttctctgcagctgtatgacaacaatttttccggcgaagtaccggaagagttcggcgaattaaagaagcttgtgaatctgtctttgtacggtaacaagctgaccggtcctctgcctcagaaattggggtctgggtcggagatggacttcatcgacgtgtcggagaacttcttgaccgggactattccgccggacatgtgcaacaaagggacgatgaagcagctgctcatgcttcagaacaaattaactggcgaaattccggcaaactacgccaagtgcacgacattgacccggttcagggtcaacaacaactccctctccggtgtggttccggcaggactttggggattgccgaatgtggcaatcattgacatcacttcgaatcaaattgaagggccgattacttccgatatcggaaacgccaagaagcttgcgcagttgtttgtgagttacaatcggttatcaggtgaattaccggacgagctttcgaagtcaacttcgttggtttcggttatgttgaataacaatcagttttccggtaagattccggcgaagataggggacttgaagcaattgagtactctgcatttagagagcaacttgttatcttcttcgattcccaagtcattgggaagctgtagtttcctgagtgacttgaacatggcgaacaacttgctttccggtgaaatcccatcatctttgggctctttgccgaccttgaattctctggatttgtttcacaaccaactctccggtaaaatcccggaaagtctagcatctctgagactaagcatgcttgatctttcgcacaacagactgacaggtgccgtaccggaatctctctcgattgcagcctacaacggcagcctttccggtaacccgggtctctgcagcatgaacatcacctacttcccacattgctcgccgaaaaaggaaatgtccgacgatgtcaggacactcattatttgcttctcagtgggtacagcaatattgtttgtttcactcatttgcttcttgttcttaaagaggaaggagaaatatcaagaccgttcattgaaggaagaatcttgggatgtaaagcctttccatgtaataaccttcagtgaggatgagattcttgattccattactcaagagaatctaattggaaaaggaggttctggaaatgtctacaaagtgtcactagccaatggcgaagaactcgccgtgaagcacatatggaacactgatccaagcggccggaaaatattcaagagccccaccccgatgctcgggagacggggcagtggtagttcgaaatcgaaggaatttgatgctgaggtgcagacgttgagctcaataaggcatgtgaatgtggtgaagttgttctgcagcattactagtgaggactcgagccttttggtctacgagtacttaccgaacggaagcttgtgggatcggctgcacacgtgtgagaagatgaagcttgattgggacgcaaggtatgagattgcagtcggagcagccaaagggttggagtatctgcaccatggctgtgagacgctagtgattcatagagatgtcaagtcgagtaacattttgttagatgagtttttgaagccccggatcgcggattttgggctcgccaagatggttcagactaatgcaattaaggactcgactcatgttgttgctggaacacacggttacatagctcctgaatatggttacacctacaaggtgaatgagaaaagcgatgtgtatagctttggtgtagtactaatggagctagtgaccgggaaaaagccgatagatccatcctttggggacaacaaggacatagtgaactggatatgtggcaacctgaggagtagagagagcgtgttaggtgtggtggactcgtacattcctgaggcctatagggaagaggctatcaaggtattgagaattgcaattctatgcacagctaggcttccagagctaagaccttccatgagaagtgtcgttcaaatgcttgaagaagctcacaagccaatgaaattgctggacattgttatcagcaaagatggttctagtaagaaaattgaagtacttaaaggaacagagaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001653 GO:0002376 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006979 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009791 GO:0009845 GO:0009888 GO:0009960 GO:0009987 GO:0010154 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0046777 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0061458 GO:0065007 GO:0071704 GO:0071944 GO:0090351 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase

Protein Analysis

1011

Amino Acids

111.69

Weight (kDa)

5.94

Isoelectric Point (pI)

34.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	53 - 93	2.7e-09	Leucine rich repeat N-terminal domain
LRR_14	PF23598	212 - 347	3e-13	Leucine-rich repeat region
Pkinase	PF00069	693 - 978	1.2e-39	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	741 - 980	1.8e-36	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004091)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09970 AT1G09970
fragaria_vesca	FvH4_5g33590
malus_domestica	MD08G1210000.v1.1 MD15G1394100.v1.1
prunus_persica	Prupe.1G542300_v2.0.a1
pyrus_communis	pycom08g18120 pycom15g35400 pycom15g35410
rosa_chinensis	RchiOBHm_Chr7g0217331 RchiOBHm_Chr7g0232471
rosa_laevigata	RLG00000001335 RLG00000002489 RLG00000002493
rosa_multiflora	Rmu_sc0001898.1_g000015 Rmu_sc0004663.1_g000011 Rmu_sc0011824.1_g000016
rosa_roxburghii	Rroxscaffold_3G00228280 Rroxscaffold_3G00242430
rosa_rugosa	Rorug07G0168100 Rorug07G0274700
rosa_samantha	Rh7AG307400 Rh7AG307800 Rh7AG428100 Rh7BG298200 Rh7BG402600 Rh7CG326500 Rh7CG326900 Rh7CG447100 Rh7DG306900 Rh7DG418900
rosa_wichuraiana	Rw7G026090 Rw7G035470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	281
Acc16I	TGCGCA	1 cut(s)	1380
Acc36I	ACCTGC	1 cut(s)	281
AccB1I	GGYRCC	1 cut(s)	1769
AccB7I	CCANNNNNTGG	2 cut(s)	804, 2747
AccI	GTMKAC	2 cut(s)	2115, 2349
AccII	CGCG	2 cut(s)	473, 2555
AciI	CCGC	7 cut(s)	150, 153, 240, 473, 1133, 2181, 2555
AclWI	GGATC	5 cut(s)	611, 2168, 2388, 2558, 2732
AcoI	YGGCCR	2 cut(s)	777, 2182
AcsI	RAATTY	6 cut(s)	257, 771, 898, 1200, 1666, 2252
AcuI	CTGAAG	2 cut(s)	1163, 2029
AcvI	CACGTG	1 cut(s)	2394
AcyI	GRCGYC	1 cut(s)	888
AfiI	CCNNNNNNNGG	8 cut(s)	454, 804, 1242, 1243, 2216, 2554, 2648, 2747
AflIII	ACRYGT	4 cut(s)	1101, 1140, 2391, 2393
AgeI	ACCGGT	1 cut(s)	1049
AhlI	ACTAGT	1 cut(s)	2324
AjiI	CACGTC	1 cut(s)	1102
AjnI	CCWGG	3 cut(s)	198, 447, 738
AleI	CACNNNNGTG	1 cut(s)	2394
Alw21I	GWGCWC	3 cut(s)	819, 1226, 2282
Alw26I	GTCTC	6 cut(s)	25, 336, 1723, 1835, 2215, 2477
Alw44I	GTGCAC	1 cut(s)	1222
AlwI	GGATC	5 cut(s)	611, 2168, 2388, 2558, 2732
Ama87I	CYCGRG	5 cut(s)	659, 875, 1825, 2216, 2335
AoxI	GGCC	4 cut(s)	777, 1340, 2182, 2838
ApaLI	GTGCAC	1 cut(s)	1222
ApoI	RAATTY	6 cut(s)	257, 771, 898, 1200, 1666, 2252
ArsI	GACNNNNNNTTYG	2 cut(s)	596, 628
AsiGI	ACCGGT	1 cut(s)	1049
Asp700I	GAANNNNTTC	2 cut(s)	2192, 2309
AspLEI	GCGC	1 cut(s)	1381
AspS9I	GGNCC	3 cut(s)	387, 1052, 1340
AsuC2I	CCSGG	8 cut(s)	544, 1123, 1237, 1709, 1826, 1827, 2548, 2722
AsuII	TTCGAA	3 cut(s)	1325, 1433, 2240
AvaI	CYCGRG	5 cut(s)	659, 875, 1825, 2216, 2335
AvaII	GGWCC	2 cut(s)	387, 1052
AxyI	CCTNAGG	2 cut(s)	2789, 2835
BaeGI	GKGCMC	1 cut(s)	1226
BanI	GGYRCC	1 cut(s)	1769
BanII	GRGCYC	6 cut(s)	626, 819, 1652, 2204, 2282, 2568
BarI	GAAGNNNNNNTAC	2 cut(s)	428, 460
BbrPI	CACGTG	1 cut(s)	2394
Bbv12I	GWGCWC	3 cut(s)	819, 1226, 2282
BbvCI	CCTCAGC	1 cut(s)	2262
BccI	CCATC	8 cut(s)	45, 86, 117, 1081, 1645, 2569, 2749, 2984
BceAI	ACGGC	4 cut(s)	544, 1757, 1822, 2135
BcgI	CGANNNNNNTGC	4 cut(s)	265, 299, 1600, 1634
BciT130I	CCWGG	3 cut(s)	200, 449, 740
BcnI	CCSGG	8 cut(s)	544, 1123, 1237, 1709, 1826, 1827, 2548, 2722
BcoDI	GTCTC	6 cut(s)	25, 336, 1723, 1835, 2215, 2477
BcuI	ACTAGT	1 cut(s)	2324
BfaI	CTAG	7 cut(s)	1718, 2129, 2325, 2489, 2714, 2892, 2997
BfmI	CTRYAG	6 cut(s)	682, 953, 1582, 1834, 2314, 2842
BfuAI	ACCTGC	1 cut(s)	281
BmcAI	AGTACT	4 cut(s)	1525, 2357, 2703, 3015
Bme18I	GGWCC	2 cut(s)	387, 1052
BmeT110I	CYCGRG	5 cut(s)	659, 875, 1825, 2216, 2335
BmgBI	CACGTC	1 cut(s)	1102
BmgT120I	GGNCC	3 cut(s)	387, 1052, 1340
BmiI	GGNNCC	3 cut(s)	388, 1275, 1771
BmsI	GCATC	5 cut(s)	523, 696, 1730, 2202, 2248
BpmI	CTGGAG	4 cut(s)	182, 530, 761, 833
Bpu10I	CCTNAGC	1 cut(s)	2262
Bpu14I	TTCGAA	3 cut(s)	1325, 1433, 2240
BpuEI	CTTGAG	2 cut(s)	442, 2061
BpuMI	CCSGG	8 cut(s)	544, 1123, 1237, 1709, 1826, 1827, 2548, 2722
BsaAI	YACGTR	1 cut(s)	2394
BsaHI	GRCGYC	1 cut(s)	888
BsaI	GGTCTC	2 cut(s)	336, 1835
BsaJI	CCNNGG	5 cut(s)	554, 691, 1825, 2473, 2546
BsaXI	ACNNNNNCTCC	8 cut(s)	194, 224, 1241, 1247, 1271, 1277, 1679, 1709
Bsc4I	CCNNNNNNNGG	8 cut(s)	454, 804, 1242, 1243, 2216, 2554, 2648, 2747
Bse118I	RCCGGY	1 cut(s)	1049
Bse1I	ACTGG	4 cut(s)	513, 583, 1198, 2777
Bse21I	CCTNAGG	2 cut(s)	2789, 2835
Bse3DI	GCAATG	1 cut(s)	1861
BseBI	CCWGG	3 cut(s)	200, 449, 740
BseDI	CCNNGG	5 cut(s)	554, 691, 1825, 2473, 2546
BseGI	GGATG	4 cut(s)	687, 2023, 2059, 2741
BseLI	CCNNNNNNNGG	8 cut(s)	454, 804, 1242, 1243, 2216, 2554, 2648, 2747
BseMI	GCAATG	1 cut(s)	1861
BseMII	CTCAG	8 cut(s)	885, 1076, 1583, 1718, 1932, 2253, 2780, 2826
BseNI	ACTGG	4 cut(s)	513, 583, 1198, 2777
BseRI	GAGGAG	3 cut(s)	110, 128, 2806
BseSI	GKGCMC	1 cut(s)	1226
BseX3I	CGGCCG	2 cut(s)	777, 2182
BsgI	GTGCAG	4 cut(s)	383, 2288, 2372, 2453
Bsh1236I	CGCG	2 cut(s)	473, 2555
Bsh1285I	CGRYCG	2 cut(s)	780, 2185
BshFI	GGCC	4 cut(s)	779, 1342, 2184, 2840
BshNI	GGYRCC	1 cut(s)	1769
BshTI	ACCGGT	1 cut(s)	1049
BsiEI	CGRYCG	2 cut(s)	780, 2185
BsiHKAI	GWGCWC	3 cut(s)	819, 1226, 2282
BsiHKCI	CYCGRG	5 cut(s)	659, 875, 1825, 2216, 2335
BslFI	GGGAC	7 cut(s)	245, 487, 1138, 1168, 1520, 2432, 2765
BslI	CCNNNNNNNGG	8 cut(s)	454, 804, 1242, 1243, 2216, 2554, 2648, 2747
BsmAI	GTCTC	6 cut(s)	25, 336, 1723, 1835, 2215, 2477
BsmBI	CGTCTC	2 cut(s)	2215, 2477
BsmFI	GGGAC	7 cut(s)	245, 487, 1138, 1168, 1520, 2432, 2765
BsmI	GAATGC	1 cut(s)	31
BsnI	GGCC	4 cut(s)	779, 1342, 2184, 2840
Bso31I	GGTCTC	2 cut(s)	336, 1835
BsoBI	CYCGRG	5 cut(s)	659, 875, 1825, 2216, 2335
Bsp119I	TTCGAA	3 cut(s)	1325, 1433, 2240
Bsp1286I	GDGCHC	7 cut(s)	626, 819, 1226, 1652, 2204, 2282, 2568
Bsp143I	GATC	6 cut(s)	616, 1744, 2173, 2380, 2550, 2737
Bsp19I	CCATGG	1 cut(s)	2473
BspACI	CCGC	7 cut(s)	150, 153, 240, 473, 1133, 2181, 2555
BspANI	GGCC	4 cut(s)	779, 1342, 2184, 2840
BspCNI	CTCAG	8 cut(s)	886, 1075, 1584, 1719, 1931, 2254, 2781, 2827
BspFNI	CGCG	2 cut(s)	473, 2555
BspLI	GGNNCC	3 cut(s)	388, 1275, 1771
BspMAI	CTGCAG	4 cut(s)	686, 957, 1838, 2318
BspMI	ACCTGC	1 cut(s)	281
BspPI	GGATC	5 cut(s)	611, 2168, 2388, 2558, 2732
BspT104I	TTCGAA	3 cut(s)	1325, 1433, 2240
BspT107I	GGYRCC	1 cut(s)	1769
BspTNI	GGTCTC	2 cut(s)	336, 1835
BsrDI	GCAATG	1 cut(s)	1861
BsrFI	RCCGGY	1 cut(s)	1049
BsrI	ACTGG	4 cut(s)	513, 583, 1198, 2777
BssAI	RCCGGY	1 cut(s)	1049
BssECI	CCNNGG	5 cut(s)	554, 691, 1825, 2473, 2546
BssMI	GATC	6 cut(s)	616, 1744, 2173, 2380, 2550, 2737
BssNI	GRCGYC	1 cut(s)	888
BssT1I	CCWWGG	2 cut(s)	691, 2473
Bst2UI	CCWGG	3 cut(s)	200, 449, 740
Bst4CI	ACNGT	5 cut(s)	404, 431, 1037, 1994, 2630
Bst6I	CTCTTC	7 cut(s)	67, 128, 137, 224, 339, 987, 2844
BstACI	GRCGYC	1 cut(s)	888
BstBAI	YACGTR	1 cut(s)	2394
BstBI	TTCGAA	3 cut(s)	1325, 1433, 2240
BstC8I	GCNNGC	5 cut(s)	378, 1377, 1739, 1868, 2568
BstDSI	CCRYGG	2 cut(s)	554, 2473
BstEII	GGTNACC	1 cut(s)	1820
BstF5I	GGATG	4 cut(s)	687, 2023, 2059, 2741
BstFNI	CGCG	2 cut(s)	473, 2555
BstHHI	GCGC	1 cut(s)	1381
BstKTI	GATC	6 cut(s)	619, 1747, 2176, 2383, 2553, 2740
BstMAI	GTCTC	6 cut(s)	25, 336, 1723, 1835, 2215, 2477
BstMBI	GATC	6 cut(s)	616, 1744, 2173, 2380, 2550, 2737
BstMCI	CGRYCG	2 cut(s)	780, 2185
BstMWI	GCNNNNNNNGC	9 cut(s)	155, 664, 799, 808, 814, 1174, 1214, 2444, 2902
BstNI	CCWGG	3 cut(s)	200, 449, 740
BstNSI	RCATGY	3 cut(s)	1144, 1741, 2294
BstPI	GGTNACC	1 cut(s)	1820
BstSFI	CTRYAG	6 cut(s)	682, 953, 1582, 1834, 2314, 2842
BstSLI	GKGCMC	1 cut(s)	1226
BstUI	CGCG	2 cut(s)	473, 2555
BstX2I	RGATCY	1 cut(s)	2737
BstXI	CCANNNNNNTGG	2 cut(s)	1573, 2458
BstYI	RGATCY	1 cut(s)	2737
BstZI	CGGCCG	2 cut(s)	777, 2182
Bsu36I	CCTNAGG	2 cut(s)	2789, 2835
BsuRI	GGCC	4 cut(s)	779, 1342, 2184, 2840
BtgI	CCRYGG	2 cut(s)	554, 2473
BtgZI	GCGATG	1 cut(s)	2694
BtrI	CACGTC	1 cut(s)	1102
BtsCI	GGATG	4 cut(s)	687, 2023, 2059, 2741
BtsI	GCAGTG	1 cut(s)	2236
BtsIMutI	CAGTG	4 cut(s)	1926, 2053, 2169, 2236
BveI	ACCTGC	1 cut(s)	281
Cac8I	GCNNGC	5 cut(s)	378, 1377, 1739, 1868, 2568
CfoI	GCGC	1 cut(s)	1381
Cfr10I	RCCGGY	1 cut(s)	1049
Cfr13I	GGNCC	3 cut(s)	387, 1052, 1340
Cfr9I	CCCGGG	1 cut(s)	1825
CseI	GACGC	3 cut(s)	896, 2429, 2494
CspAI	ACCGGT	1 cut(s)	1049
DpnI	GATC	6 cut(s)	618, 1746, 2175, 2382, 2552, 2739
DpnII	GATC	6 cut(s)	616, 1744, 2173, 2380, 2550, 2737
EaeI	YGGCCR	2 cut(s)	777, 2182
EagI	CGGCCG	2 cut(s)	777, 2182
Eam1104I	CTCTTC	7 cut(s)	67, 128, 137, 224, 339, 987, 2844
EarI	CTCTTC	7 cut(s)	67, 128, 137, 224, 339, 987, 2844
EciI	GGCGGA	1 cut(s)	1122
Ecl136II	GAGCTC	2 cut(s)	817, 2280
EclXI	CGGCCG	2 cut(s)	777, 2182
Eco130I	CCWWGG	2 cut(s)	691, 2473
Eco147I	AGGCCT	1 cut(s)	2840
Eco24I	GRGCYC	6 cut(s)	626, 819, 1652, 2204, 2282, 2568
Eco31I	GGTCTC	2 cut(s)	336, 1835
Eco32I	GATATC	1 cut(s)	1357
Eco47I	GGWCC	2 cut(s)	387, 1052
Eco52I	CGGCCG	2 cut(s)	777, 2182
Eco53kI	GAGCTC	2 cut(s)	817, 2280
Eco57I	CTGAAG	2 cut(s)	1163, 2029
Eco72I	CACGTG	1 cut(s)	2394
Eco81I	CCTNAGG	2 cut(s)	2789, 2835
Eco88I	CYCGRG	5 cut(s)	659, 875, 1825, 2216, 2335
Eco91I	GGTNACC	1 cut(s)	1820
EcoICRI	GAGCTC	2 cut(s)	817, 2280
EcoO65I	GGTNACC	1 cut(s)	1820
EcoRI	GAATTC	1 cut(s)	1666
EcoRII	CCWGG	3 cut(s)	198, 447, 738
EcoRV	GATATC	1 cut(s)	1357
EcoT14I	CCWWGG	2 cut(s)	691, 2473
EcoT22I	ATGCAT	1 cut(s)	15
EcoT38I	GRGCYC	6 cut(s)	626, 819, 1652, 2204, 2282, 2568
ErhI	CCWWGG	2 cut(s)	691, 2473
Esp3I	CGTCTC	2 cut(s)	2215, 2477
FaqI	GGGAC	7 cut(s)	245, 487, 1138, 1168, 1520, 2432, 2765
FauI	CCCGC	1 cut(s)	466
FauNDI	CATATG	2 cut(s)	350, 2162
FblI	GTMKAC	2 cut(s)	2115, 2349
FokI	GGATG	4 cut(s)	674, 2030, 2066, 2728
FriOI	GRGCYC	6 cut(s)	626, 819, 1652, 2204, 2282, 2568
FspBI	CTAG	7 cut(s)	1718, 2129, 2325, 2489, 2714, 2892, 2997
FspI	TGCGCA	1 cut(s)	1380
GlaI	GCGC	1 cut(s)	1380
GsuI	CTGGAG	4 cut(s)	182, 530, 761, 833
HaeIII	GGCC	4 cut(s)	779, 1342, 2184, 2840
HgaI	GACGC	3 cut(s)	896, 2429, 2494
HhaI	GCGC	1 cut(s)	1381
Hin1I	GRCGYC	1 cut(s)	888
Hin6I	GCGC	1 cut(s)	1379
HinP1I	GCGC	1 cut(s)	1379
HincII	GTYRAC	3 cut(s)	73, 1249, 1440
HindII	GTYRAC	3 cut(s)	73, 1249, 1440
HindIII	AAGCTT	5 cut(s)	842, 1013, 1373, 2371, 2408
Hpy99I	CGWCG	6 cut(s)	164, 284, 287, 890, 1103, 1892
HpyAV	CCTTC	7 cut(s)	902, 1331, 1969, 1996, 2053, 2242, 2922
HpyCH4III	ACNGT	5 cut(s)	404, 431, 1037, 1994, 2630
HpyCH4IV	ACGT	4 cut(s)	279, 1101, 2273, 2393
HpyF10VI	GCNNNNNNNGC	9 cut(s)	155, 664, 799, 808, 814, 1174, 1214, 2444, 2902
HpySE526I	ACGT	4 cut(s)	279, 1101, 2273, 2393
Hsp92I	GRCGYC	1 cut(s)	888
HspAI	GCGC	1 cut(s)	1379
Kzo9I	GATC	6 cut(s)	616, 1744, 2173, 2380, 2550, 2737
LmnI	GCTCC	5 cut(s)	511, 814, 2444, 2644, 2710
LweI	GCATC	5 cut(s)	523, 696, 1730, 2202, 2248
MaeI	CTAG	7 cut(s)	1718, 2129, 2325, 2489, 2714, 2892, 2997
MaeII	ACGT	4 cut(s)	279, 1101, 2273, 2393
MalI	GATC	6 cut(s)	618, 1746, 2175, 2382, 2552, 2739
MboI	GATC	6 cut(s)	616, 1744, 2173, 2380, 2550, 2737
MfeI	CAATTG	1 cut(s)	1517
MflI	RGATCY	1 cut(s)	2737
MhlI	GDGCHC	7 cut(s)	626, 819, 1226, 1652, 2204, 2282, 2568
MlyI	GAGTC	8 cut(s)	27, 197, 227, 338, 2327, 2594, 2599, 2816
MmeI	TCCRAC	7 cut(s)	168, 321, 1062, 1086, 1911, 2422, 2439
Mph1103I	ATGCAT	1 cut(s)	15
MroXI	GAANNNNTTC	2 cut(s)	2192, 2309
MseI	TTAA	6 cut(s)	651, 1007, 1190, 1967, 2595, 3018
MslI	CAYNNNNRTG	7 cut(s)	572, 1100, 2210, 2295, 2394, 2478, 2502
MspA1I	CMGCKG	4 cut(s)	534, 811, 958, 1168
MunI	CAATTG	1 cut(s)	1517
Mva1269I	GAATGC	1 cut(s)	31
MvaI	CCWGG	3 cut(s)	200, 449, 740
MvnI	CGCG	2 cut(s)	473, 2555
MwoI	GCNNNNNNNGC	9 cut(s)	155, 664, 799, 808, 814, 1174, 1214, 2444, 2902
NciI	CCSGG	8 cut(s)	544, 1123, 1237, 1709, 1826, 1827, 2548, 2722
NcoI	CCATGG	1 cut(s)	2473
NdeI	CATATG	2 cut(s)	350, 2162
NdeII	GATC	6 cut(s)	616, 1744, 2173, 2380, 2550, 2737
NlaIV	GGNNCC	3 cut(s)	388, 1275, 1771
NmeAIII	GCCGAG	1 cut(s)	805
NmuCI	GTSAC	4 cut(s)	602, 1595, 2124, 2716
NsbI	TGCGCA	1 cut(s)	1380
NsiI	ATGCAT	1 cut(s)	15
NspI	RCATGY	3 cut(s)	1144, 1741, 2294
NspV	TTCGAA	3 cut(s)	1325, 1433, 2240
OliI	CACNNNNGTG	1 cut(s)	2394
PaeI	GCATGC	1 cut(s)	1741
PaeR7I	CTCGAG	3 cut(s)	659, 875, 2335
PaqCI	CACCTGC	1 cut(s)	281
PceI	AGGCCT	1 cut(s)	2840
PciI	ACATGT	1 cut(s)	1140
PcsI	WCGNNNNNNNCGW	1 cut(s)	882
PctI	GAATGC	1 cut(s)	31
PdmI	GAANNNNTTC	2 cut(s)	2192, 2309
PflFI	GACNNNGTC	1 cut(s)	1892
PflMI	CCANNNNNTGG	2 cut(s)	804, 2747
PfoI	TCCNGGA	3 cut(s)	198, 542, 1707
PinAI	ACCGGT	1 cut(s)	1049
PleI	GAGTC	8 cut(s)	26, 197, 227, 338, 2327, 2594, 2599, 2816
PmaCI	CACGTG	1 cut(s)	2394
PmlI	CACGTG	1 cut(s)	2394
PpsI	GAGTC	8 cut(s)	26, 197, 227, 338, 2327, 2594, 2599, 2816
Ppu21I	YACGTR	1 cut(s)	2394
PscI	ACATGT	1 cut(s)	1140
Psp124BI	GAGCTC	2 cut(s)	819, 2282
Psp6I	CCWGG	3 cut(s)	198, 447, 738
PspCI	CACGTG	1 cut(s)	2394
PspEI	GGTNACC	1 cut(s)	1820
PspGI	CCWGG	3 cut(s)	198, 447, 738
PspN4I	GGNNCC	3 cut(s)	388, 1275, 1771
PspPI	GGNCC	3 cut(s)	387, 1052, 1340
PspXI	VCTCGAGB	2 cut(s)	659, 2335
PsrI	GAACNNNNNNTAC	2 cut(s)	1835, 1867
PstI	CTGCAG	4 cut(s)	686, 957, 1838, 2318
PsuI	RGATCY	1 cut(s)	2737
PsyI	GACNNNGTC	1 cut(s)	1892
PvuII	CAGCTG	4 cut(s)	534, 811, 958, 1168
RseI	CAYNNNNRTG	7 cut(s)	572, 1100, 2210, 2295, 2394, 2478, 2502
SacI	GAGCTC	2 cut(s)	819, 2282
SaqAI	TTAA	6 cut(s)	651, 1007, 1190, 1967, 2595, 3018
Sau3AI	GATC	6 cut(s)	616, 1744, 2173, 2380, 2550, 2737
Sau96I	GGNCC	3 cut(s)	387, 1052, 1340
ScaI	AGTACT	4 cut(s)	1525, 2357, 2703, 3015
SchI	GAGTC	8 cut(s)	27, 197, 227, 338, 2327, 2594, 2599, 2816
SduI	GDGCHC	7 cut(s)	626, 819, 1226, 1652, 2204, 2282, 2568
SfaNI	GCATC	5 cut(s)	523, 696, 1730, 2202, 2248
SfcI	CTRYAG	6 cut(s)	682, 953, 1582, 1834, 2314, 2842
Sfr274I	CTCGAG	3 cut(s)	659, 875, 2335
SfuI	TTCGAA	3 cut(s)	1325, 1433, 2240
SinI	GGWCC	2 cut(s)	387, 1052
SlaI	CTCGAG	3 cut(s)	659, 875, 2335
SmaI	CCCGGG	1 cut(s)	1827
SmiMI	CAYNNNNRTG	7 cut(s)	572, 1100, 2210, 2295, 2394, 2478, 2502
SmlI	CTYRAG	5 cut(s)	421, 659, 875, 2076, 2335
SmoI	CTYRAG	5 cut(s)	421, 659, 875, 2076, 2335
SpeI	ACTAGT	1 cut(s)	2324
SphI	GCATGC	1 cut(s)	1741
SseBI	AGGCCT	1 cut(s)	2840
SsiI	CCGC	7 cut(s)	150, 153, 240, 473, 1133, 2181, 2555
SspI	AATATT	2 cut(s)	1935, 2193
SspMI	CTAG	7 cut(s)	1718, 2129, 2325, 2489, 2714, 2892, 2997
SstI	GAGCTC	2 cut(s)	819, 2282
StuI	AGGCCT	1 cut(s)	2840
StyI	CCWWGG	2 cut(s)	691, 2473
TaaI	ACNGT	5 cut(s)	404, 431, 1037, 1994, 2630
TaiI	ACGT	4 cut(s)	282, 1104, 2276, 2396
TatI	WGTACW	4 cut(s)	1523, 2355, 2701, 3013
TauI	GCSGC	3 cut(s)	152, 155, 2184
Tru1I	TTAA	6 cut(s)	651, 1007, 1190, 1967, 2595, 3018
Tru9I	TTAA	6 cut(s)	651, 1007, 1190, 1967, 2595, 3018
TscAI	CASTG	4 cut(s)	1926, 2053, 2176, 2236
TseFI	GTSAC	4 cut(s)	602, 1595, 2124, 2716
Tsp45I	GTSAC	4 cut(s)	602, 1595, 2124, 2716
TspDTI	ATGAA	9 cut(s)	468, 509, 1084, 1175, 1856, 1986, 2420, 2486, 2975
TspGWI	ACGGA	3 cut(s)	327, 428, 2382
TspMI	CCCGGG	1 cut(s)	1825
TspRI	CASTG	4 cut(s)	1926, 2053, 2176, 2236
Tth111I	GACNNNGTC	1 cut(s)	1892
Van91I	CCANNNNNTGG	2 cut(s)	804, 2747
VneI	GTGCAC	1 cut(s)	1222
VpaK11BI	GGWCC	2 cut(s)	387, 1052
XapI	RAATTY	6 cut(s)	257, 771, 898, 1200, 1666, 2252
XceI	RCATGY	3 cut(s)	1144, 1741, 2294
XhoI	CTCGAG	3 cut(s)	659, 875, 2335
XmaI	CCCGGG	1 cut(s)	1825
XmiI	GTMKAC	2 cut(s)	2115, 2349
XmnI	GAANNNNTTC	2 cut(s)	2192, 2309
XspI	CTAG	7 cut(s)	1718, 2129, 2325, 2489, 2714, 2892, 2997
ZrmI	AGTACT	4 cut(s)	1525, 2357, 2703, 3015
Zsp2I	ATGCAT	1 cut(s)	15

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.