Rmu_sc0005037.1_g000010

Leucine carboxyl methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005037.1
OG0011175
Physical Location & Seq
Reverse (-)
37406 .. 40025
2620 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1146 bp
atgggtgccctcaaggttcgatcattaatgaaacttcaatacatgcttgacgatgaagttcctcgcgctctgcggagggaagctgtgtctgactctaacccccatatacgggagggagctgaatggacgggcgatgaatactccttctattcccacccgtacggcttatcatcatcggaattgtatatggactctttactgggcttcccacaatccccagctactgccatcttgcgccgcccgctaatctccacttcaagaccaaacagtaacagaaatgccgggttgagtttcagagcaaaacccaacgacgcaattgacccattactccacgacgccgttaattcagcttctcttcgcttccgagagacccatcgaccagagcctctctttgttgatccatatgccggttgctttgttgatcctaatgcgcagatggacatgaagcaatgctcacaccattattgcattgcaactaagtacattgatgataagttacttcgtacagtgaaccatattgagggacttaagcaggttgttttgctaacagatggcatggacacccggccgtataggcttagttggccaacttcaaccataatttttgatatttcgccggaccgggtattcagtggagcagctgaaaagcttaaaggtgttggggctaaaatcccaagaagctgcttattccttcatgttccattggagtcctccgatttgcagcaaactctacgtgctaaaggcttcaatggtaaccggcctagtatatgggccatgcagggactgcccgtaatgacattggcaaattttgaggacattttgctcactgttagtggtttgtccatgaatggatgtggctttttgggagaattgcctgcttggttggcagagactgaaatagtgaccaagactagtacaagggaatggatggagaaattattcatgaacaacggctttcgggtggacatgatttgctatgaagaagttgcaaagagtttaggcaagaaattagcagcaggaccttataagaatatactattttcctcagaacaactgcggttttctgatgatcagatggaaacttggagaagggaatttcaaagagttgaggaacaaggggatgaagaaggttttgaagagctatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
LCM

Protein Analysis

381

Amino Acids

43.12

Weight (kDa)

5.61

Isoelectric Point (pI)

46.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LCM PF04072 113 - 262 1.4e-23 Leucine carboxyl methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011175)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02405 AT4G02405
fragaria_vesca FvH4_2g25800 FvH4_2g25800
malus_domestica MD03G1288800.v1.1 MD11G1309100.v1.1
prunus_persica Prupe.8G262100_v2.0.a1
pyrus_communis pycom03g22890 pycom11g27040
rosa_chinensis RchiOBHm_Chr6g0294111
rosa_laevigata RLG00000011898
rosa_multiflora Rmu_sc0005037.1_g000010
rosa_roxburghii Rroxscaffold_7G00173640
rosa_rugosa Rorug06G0241200 Rorug06G0241300
rosa_samantha Rh6AG353900 Rh6BG360800 Rh6CG368000 Rh6DG354700
rosa_wichuraiana Rw6G030840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1026
Acc16I TGCGCA 1 cut(s) 432
Acc36I ACCTGC 1 cut(s) 523
AccB1I GGYRCC 1 cut(s) 5
AccII CGCG 1 cut(s) 66
AciI CCGC 4 cut(s) 73, 238, 242, 1057
AclWI GGATC 2 cut(s) 392, 416
AcoI YGGCCR 2 cut(s) 566, 584
AcsI RAATTY 2 cut(s) 805, 1094
AcyI GRCGYC 1 cut(s) 336
AfaI GTAC 4 cut(s) 161, 482, 505, 916
AfiI CCNNNNNNNGG 4 cut(s) 108, 109, 407, 520
AflII CTTAAG 1 cut(s) 527
AgsI TTSAA 6 cut(s) 38, 258, 594, 748, 1100, 1136
AhlI ACTAGT 1 cut(s) 911
AluBI AGCT 8 cut(s) 83, 119, 221, 350, 641, 649, 681, 1141
AluI AGCT 8 cut(s) 83, 119, 221, 350, 641, 649, 681, 1141
Alw26I GTCTC 2 cut(s) 362, 884
AlwI GGATC 2 cut(s) 392, 416
AlwNI CAGNNNCTG 3 cut(s) 224, 784, 893
AoxI GGCC 4 cut(s) 566, 584, 758, 771
ApeKI GCWGC 4 cut(s) 638, 681, 721, 1013
ApoI RAATTY 2 cut(s) 805, 1094
AseI ATTAAT 1 cut(s) 26
Asp700I GAANNNNTTC 1 cut(s) 938
AspLEI GCGC 3 cut(s) 68, 237, 433
AspS9I GGNCC 3 cut(s) 619, 771, 1019
AsuC2I CCSGG 3 cut(s) 283, 565, 623
AvaII GGWCC 2 cut(s) 619, 1019
BaeGI GKGCMC 1 cut(s) 10
BalI TGGCCA 1 cut(s) 586
BanI GGYRCC 1 cut(s) 5
BbvI GCAGC 4 cut(s) 650, 668, 733, 1025
BccI CCATC 6 cut(s) 236, 381, 430, 545, 922, 1069
BceAI ACGGC 4 cut(s) 178, 323, 553, 967
BclI TGATCA 1 cut(s) 1069
BcnI CCSGG 3 cut(s) 283, 565, 623
BcoDI GTCTC 2 cut(s) 362, 884
BcuI ACTAGT 1 cut(s) 911
BfaI CTAG 2 cut(s) 762, 912
BfrI CTTAAG 1 cut(s) 527
BfuAI ACCTGC 1 cut(s) 523
BglI GCCNNNNNGGC 1 cut(s) 574
BisI GCNGC 5 cut(s) 238, 639, 682, 722, 1014
BlsI GCNGC 5 cut(s) 239, 640, 683, 723, 1015
Bme1390I CCNGG 3 cut(s) 283, 565, 623
Bme18I GGWCC 2 cut(s) 619, 1019
BmgT120I GGNCC 3 cut(s) 619, 771, 1019
BmiI GGNNCC 1 cut(s) 7
BmrFI CCNGG 3 cut(s) 283, 565, 623
BmrI ACTGGG 1 cut(s) 209
BmuI ACTGGG 1 cut(s) 209
BpuMI CCSGG 3 cut(s) 283, 565, 623
BsaAI YACGTR 1 cut(s) 734
BsaHI GRCGYC 1 cut(s) 336
BsaI GGTCTC 1 cut(s) 362
Bsc4I CCNNNNNNNGG 4 cut(s) 108, 109, 407, 520
Bse118I RCCGGY 2 cut(s) 407, 756
Bse1I ACTGG 1 cut(s) 204
Bse3DI GCAATG 2 cut(s) 455, 468
BseGI GGATG 3 cut(s) 857, 933, 1126
BseLI CCNNNNNNNGG 4 cut(s) 108, 109, 407, 520
BseMI GCAATG 2 cut(s) 455, 468
BseMII CTCAG 1 cut(s) 1059
BseNI ACTGG 1 cut(s) 204
BseSI GKGCMC 1 cut(s) 10
BseX3I CGGCCG 1 cut(s) 566
BseXI GCAGC 4 cut(s) 650, 668, 733, 1025
BseYI CCCAGC 1 cut(s) 217
Bsh1236I CGCG 1 cut(s) 66
Bsh1285I CGRYCG 1 cut(s) 569
BshFI GGCC 4 cut(s) 568, 586, 760, 773
BshNI GGYRCC 1 cut(s) 5
BsiEI CGRYCG 1 cut(s) 569
BsiSI CCGG 6 cut(s) 282, 408, 565, 617, 622, 757
BsiWI CGTACG 1 cut(s) 159
BslFI GGGAC 2 cut(s) 537, 795
BslI CCNNNNNNNGG 4 cut(s) 108, 109, 407, 520
BsmAI GTCTC 2 cut(s) 362, 884
BsmFI GGGAC 2 cut(s) 537, 795
BsnI GGCC 4 cut(s) 568, 586, 760, 773
Bso31I GGTCTC 1 cut(s) 362
Bsp1286I GDGCHC 1 cut(s) 10
Bsp143I GATC 4 cut(s) 20, 397, 421, 1069
BspACI CCGC 4 cut(s) 73, 238, 242, 1057
BspANI GGCC 4 cut(s) 568, 586, 760, 773
BspCNI CTCAG 1 cut(s) 1058
BspFNI CGCG 1 cut(s) 66
BspHI TCATGA 1 cut(s) 942
BspLI GGNNCC 1 cut(s) 7
BspMI ACCTGC 1 cut(s) 523
BspPI GGATC 2 cut(s) 392, 416
BspQI GCTCTTC 1 cut(s) 1131
BspT107I GGYRCC 1 cut(s) 5
BspTI CTTAAG 1 cut(s) 527
BspTNI GGTCTC 1 cut(s) 362
BsrDI GCAATG 2 cut(s) 455, 468
BsrFI RCCGGY 2 cut(s) 407, 756
BsrI ACTGG 1 cut(s) 204
BssAI RCCGGY 2 cut(s) 407, 756
BssMI GATC 4 cut(s) 20, 397, 421, 1069
BssNI GRCGYC 1 cut(s) 336
Bst4CI ACNGT 3 cut(s) 269, 508, 829
Bst6I CTCTTC 2 cut(s) 360, 1131
BstACI GRCGYC 1 cut(s) 336
BstAFI CTTAAG 1 cut(s) 527
BstAPI GCANNNNNTGC 1 cut(s) 784
BstBAI YACGTR 1 cut(s) 734
BstC8I GCNNGC 2 cut(s) 242, 876
BstDEI CTNAG 3 cut(s) 477, 578, 1045
BstEII GGTNACC 1 cut(s) 752
BstF5I GGATG 3 cut(s) 857, 933, 1126
BstFNI CGCG 1 cut(s) 66
BstHHI GCGC 3 cut(s) 68, 237, 433
BstKTI GATC 4 cut(s) 23, 400, 424, 1072
BstMAI GTCTC 2 cut(s) 362, 884
BstMBI GATC 4 cut(s) 20, 397, 421, 1069
BstMCI CGRYCG 1 cut(s) 569
BstMWI GCNNNNNNNGC 5 cut(s) 241, 574, 583, 784, 884
BstNSI RCATGY 1 cut(s) 46
BstPI GGTNACC 1 cut(s) 752
BstSCI CCNGG 3 cut(s) 281, 563, 621
BstSLI GKGCMC 1 cut(s) 10
BstUI CGCG 1 cut(s) 66
BstV1I GCAGC 4 cut(s) 650, 668, 733, 1025
BstZI CGGCCG 1 cut(s) 566
BsuRI GGCC 4 cut(s) 568, 586, 760, 773
BtgZI GCGATG 1 cut(s) 147
BtsCI GGATG 3 cut(s) 857, 933, 1126
BtsIMutI CAGTG 3 cut(s) 513, 637, 825
BveI ACCTGC 1 cut(s) 523
Cac8I GCNNGC 2 cut(s) 242, 876
CaiI CAGNNNCTG 3 cut(s) 224, 784, 893
CciI TCATGA 1 cut(s) 942
CfoI GCGC 3 cut(s) 68, 237, 433
Cfr10I RCCGGY 2 cut(s) 407, 756
Cfr13I GGNCC 3 cut(s) 619, 771, 1019
CpoI CGGWCCG 1 cut(s) 619
CseI GACGC 2 cut(s) 320, 344
Csp6I GTAC 4 cut(s) 160, 481, 504, 915
CspI CGGWCCG 1 cut(s) 619
CviAII CATG 8 cut(s) 43, 442, 556, 695, 775, 844, 943, 967
CviQI GTAC 4 cut(s) 160, 481, 504, 915
DdeI CTNAG 3 cut(s) 477, 578, 1045
DpnI GATC 4 cut(s) 22, 399, 423, 1071
DpnII GATC 4 cut(s) 20, 397, 421, 1069
EaeI YGGCCR 2 cut(s) 566, 584
EagI CGGCCG 1 cut(s) 566
Eam1104I CTCTTC 2 cut(s) 360, 1131
EarI CTCTTC 2 cut(s) 360, 1131
EclXI CGGCCG 1 cut(s) 566
Eco31I GGTCTC 1 cut(s) 362
Eco47I GGWCC 2 cut(s) 619, 1019
Eco52I CGGCCG 1 cut(s) 566
Eco91I GGTNACC 1 cut(s) 752
EcoO109I RGGNCCY 1 cut(s) 1019
EcoO65I GGTNACC 1 cut(s) 752
FaeI CATG 8 cut(s) 46, 445, 559, 698, 778, 847, 946, 970
FaqI GGGAC 2 cut(s) 537, 795
FatI CATG 8 cut(s) 42, 441, 555, 694, 774, 843, 942, 966
FauI CCCGC 1 cut(s) 249
FauNDI CATATG 1 cut(s) 403
FbaI TGATCA 1 cut(s) 1069
Fnu4HI GCNGC 5 cut(s) 238, 639, 682, 722, 1014
FokI GGATG 3 cut(s) 864, 940, 1133
Fsp4HI GCNGC 5 cut(s) 238, 639, 682, 722, 1014
FspBI CTAG 2 cut(s) 762, 912
FspI TGCGCA 1 cut(s) 432
GlaI GCGC 3 cut(s) 67, 236, 432
GluI GCNGC 5 cut(s) 238, 639, 682, 722, 1014
GsaI CCCAGC 1 cut(s) 221
HaeIII GGCC 4 cut(s) 568, 586, 760, 773
HapII CCGG 6 cut(s) 282, 408, 565, 617, 622, 757
HgaI GACGC 2 cut(s) 320, 344
HhaI GCGC 3 cut(s) 68, 237, 433
Hin1I GRCGYC 1 cut(s) 336
Hin1II CATG 8 cut(s) 46, 445, 559, 698, 778, 847, 946, 970
Hin6I GCGC 3 cut(s) 66, 235, 431
HinP1I GCGC 3 cut(s) 66, 235, 431
HindIII AAGCTT 1 cut(s) 647
HinfI GANTC 3 cut(s) 92, 191, 707
HpaII CCGG 6 cut(s) 282, 408, 565, 617, 622, 757
Hpy166II GTNNAC 2 cut(s) 511, 964
Hpy188I TCNGA 8 cut(s) 91, 178, 296, 365, 715, 1048, 1066, 1074
Hpy188III TCNNGA 2 cut(s) 258, 943
Hpy8I GTNNAC 2 cut(s) 511, 964
Hpy99I CGWCG 2 cut(s) 314, 338
HpyAV CCTTC 4 cut(s) 154, 701, 1083, 1121
HpyCH4III ACNGT 3 cut(s) 269, 508, 829
HpyCH4IV ACGT 1 cut(s) 733
HpyCH4V TGCA 5 cut(s) 468, 473, 721, 778, 989
HpyF10VI GCNNNNNNNGC 5 cut(s) 241, 574, 583, 784, 884
HpyF3I CTNAG 3 cut(s) 477, 578, 1045
HpySE526I ACGT 1 cut(s) 733
Hsp92I GRCGYC 1 cut(s) 336
Hsp92II CATG 8 cut(s) 46, 445, 559, 698, 778, 847, 946, 970
HspAI GCGC 3 cut(s) 66, 235, 431
Ksp22I TGATCA 1 cut(s) 1069
Kzo9I GATC 4 cut(s) 20, 397, 421, 1069
LguI GCTCTTC 1 cut(s) 1131
LmnI GCTCC 2 cut(s) 116, 635
Lsp1109I GCAGC 4 cut(s) 650, 668, 733, 1025
MaeI CTAG 2 cut(s) 762, 912
MaeII ACGT 1 cut(s) 733
MaeIII GTNAC 4 cut(s) 269, 495, 752, 901
MalI GATC 4 cut(s) 22, 399, 423, 1071
MboI GATC 4 cut(s) 20, 397, 421, 1069
MboII GAAGA 3 cut(s) 347, 992, 1136
MfeI CAATTG 1 cut(s) 315
MhlI GDGCHC 1 cut(s) 10
MlsI TGGCCA 1 cut(s) 586
MluCI AATT 9 cut(s) 179, 315, 343, 600, 805, 869, 935, 1007, 1094
MluNI TGGCCA 1 cut(s) 586
MlyI GAGTC 3 cut(s) 86, 185, 716
Mox20I TGGCCA 1 cut(s) 586
MroXI GAANNNNTTC 1 cut(s) 938
MscI TGGCCA 1 cut(s) 586
MseI TTAA 4 cut(s) 26, 342, 528, 651
Msp20I TGGCCA 1 cut(s) 586
MspA1I CMGCKG 1 cut(s) 641
MspCI CTTAAG 1 cut(s) 527
MspI CCGG 6 cut(s) 282, 408, 565, 617, 622, 757
MspR9I CCNGG 3 cut(s) 283, 565, 623
MunI CAATTG 1 cut(s) 315
MvnI CGCG 1 cut(s) 66
MwoI GCNNNNNNNGC 5 cut(s) 241, 574, 583, 784, 884
NciI CCSGG 3 cut(s) 283, 565, 623
NdeI CATATG 1 cut(s) 403
NdeII GATC 4 cut(s) 20, 397, 421, 1069
NlaIII CATG 8 cut(s) 46, 445, 559, 698, 778, 847, 946, 970
NlaIV GGNNCC 1 cut(s) 7
NmuCI GTSAC 1 cut(s) 901
NsbI TGCGCA 1 cut(s) 432
NspI RCATGY 1 cut(s) 46
PagI TCATGA 1 cut(s) 942
PciSI GCTCTTC 1 cut(s) 1131
PdmI GAANNNNTTC 1 cut(s) 938
Pfl23II CGTACG 1 cut(s) 159
PkrI GCNGC 5 cut(s) 239, 640, 683, 723, 1015
PleI GAGTC 3 cut(s) 86, 185, 715
PpsI GAGTC 3 cut(s) 86, 185, 715
Ppu21I YACGTR 1 cut(s) 734
PpuMI RGGWCCY 1 cut(s) 1019
PshBI ATTAAT 1 cut(s) 26
PsiI TTATAA 1 cut(s) 1026
Psp5II RGGWCCY 1 cut(s) 1019
PspEI GGTNACC 1 cut(s) 752
PspFI CCCAGC 1 cut(s) 217
PspLI CGTACG 1 cut(s) 159
PspN4I GGNNCC 1 cut(s) 7
PspPI GGNCC 3 cut(s) 619, 771, 1019
PspPPI RGGWCCY 1 cut(s) 1019
PstNI CAGNNNCTG 3 cut(s) 224, 784, 893
PvuII CAGCTG 1 cut(s) 641
RsaI GTAC 4 cut(s) 161, 482, 505, 916
RsaNI GTAC 4 cut(s) 160, 481, 504, 915
Rsr2I CGGWCCG 1 cut(s) 619
RsrII CGGWCCG 1 cut(s) 619
SapI GCTCTTC 1 cut(s) 1131
SaqAI TTAA 4 cut(s) 26, 342, 528, 651
SatI GCNGC 5 cut(s) 238, 639, 682, 722, 1014
Sau3AI GATC 4 cut(s) 20, 397, 421, 1069
Sau96I GGNCC 3 cut(s) 619, 771, 1019
SchI GAGTC 3 cut(s) 86, 185, 716
ScrFI CCNGG 3 cut(s) 283, 565, 623
SduI GDGCHC 1 cut(s) 10
SinI GGWCC 2 cut(s) 619, 1019
SmlI CTYRAG 2 cut(s) 11, 527
SmoI CTYRAG 2 cut(s) 11, 527
SpeI ACTAGT 1 cut(s) 911
Sse9I AATT 9 cut(s) 179, 315, 343, 600, 805, 869, 935, 1007, 1094
SsiI CCGC 4 cut(s) 73, 238, 242, 1057
SspMI CTAG 2 cut(s) 762, 912
StyD4I CCNGG 3 cut(s) 281, 563, 621
TaaI ACNGT 3 cut(s) 269, 508, 829
TaiI ACGT 1 cut(s) 736
TaqI TCGA 2 cut(s) 19, 376
TasI AATT 9 cut(s) 179, 315, 343, 600, 805, 869, 935, 1007, 1094
TatI WGTACW 2 cut(s) 480, 914
TauI GCSGC 1 cut(s) 240
Tru1I TTAA 4 cut(s) 26, 342, 528, 651
Tru9I TTAA 4 cut(s) 26, 342, 528, 651
TscAI CASTG 3 cut(s) 513, 637, 832
TseFI GTSAC 1 cut(s) 901
TseI GCWGC 4 cut(s) 638, 681, 721, 1013
Tsp45I GTSAC 1 cut(s) 901
TspRI CASTG 3 cut(s) 513, 637, 832
Vha464I CTTAAG 1 cut(s) 527
VpaK11BI GGWCC 2 cut(s) 619, 1019
VspI ATTAAT 1 cut(s) 26
XapI RAATTY 2 cut(s) 805, 1094
XceI RCATGY 1 cut(s) 46
XmnI GAANNNNTTC 1 cut(s) 938
XspI CTAG 2 cut(s) 762, 912
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.