Rmu_sc0005397.1_g000001

Plasma membrane ATPase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005397.1
OG0002698
Physical Location & Seq
Forward (+)
1 .. 3264
3264 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1383 bp
gaagtacctgctggaaccaaagacagtcctggtggaccttgggagtttgttggtcttctacctttgtttgatccaccacgtcacgacagtgctgaaactattagaagagctctagatcttggtgtgagtgttaagatgattacaggcgatcaactggcaattgccaaagagacagggagacgacttgggatgggctcaaacatgtatccatcatcttcattgcttggtgaaaataagaatggcttagatgcaagtctacaaattgatgaactcattgagaatgctgatggttttgctggtgtctttccagagcataaatatgagatcgttcagcgattacaaattaagaagcacatagttggaatgaccggtgatggagttaatgatgcacctgccttgaagaaagcagacataggaattgctgtggcagatgccacagatgctgctcgtagtgcatctgatatagtactgacagagcctggattgagtgttattattagtgctgttctgacaagccgtgcaatctttcaaagaatgaagaactacacacttggtttcttgttgctaactgcattctggcgatttgatttccctccttttatggtcctcatcatagccattcttaatgacgggcctaaatataattgtgagcgctcatattctagacttgatgacaatgaagaagttattaacatatctctctgtgtctctcagaaacacttccatctagacctggacttcaagaaactcgctgatctcaatgagtcgagttatacagagacactgaatggccagctagcatctgttgtgtaccttcaagttagcaccatcagccaggctctaatttttgtaactcgctccagaggttggtcattcatggaaagacctggtcttcttcttgttggtgccttcatagttgctcaaatggttgcaacagtaatatctgctcaggcaacatggaaatttgctcaaattcatagcgttggctggggttggactggagctgtatggatttacaacattataatctatatgcttcttgatcctatcaagttttttgtgcgatatgcactcagtgggagggcctggagtttggtactgaacaaaaggacggctttcaccacccaaaaggactttggtagggaagctcgtgaggctgcatgggcaacagaacagcgcacacttcatggcctcccaactatggacaaaagtatcttccatgagaggcacacattcagggatgttagcatgatggctgaagaagcccgacgacgtgcagagattgcaagactaagggaaattcacactctcaaagggaaggtagagtcctttgcaaagctaaggggtttggacattgacgtcaatccacattacacagtctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko00190 map00190
Pfam Domains
Protein Families
Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

460

Amino Acids

51.34

Weight (kDa)

6.94

Isoelectric Point (pI)

39.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hydrolase PF00702 16 - 137 1e-11 haloacid dehalogenase-like hydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1025
AarI CACCTGC 1 cut(s) 400
AasI GACNNNNNNGTC 1 cut(s) 1358
AatII GACGTC 1 cut(s) 1362
Acc36I ACCTGC 2 cut(s) 16, 400
AccB1I GGYRCC 1 cut(s) 905
AccB7I CCANNNNNTGG 1 cut(s) 867
AccI GTMKAC 1 cut(s) 256
AclWI GGATC 2 cut(s) 65, 1037
AcoI YGGCCR 1 cut(s) 790
AcsI RAATTY 3 cut(s) 962, 972, 1299
AcuI CTGAAG 1 cut(s) 1278
AcyI GRCGYC 1 cut(s) 1359
AdeI CACNNNGTG 1 cut(s) 1076
AfaI GTAC 4 cut(s) 6, 468, 812, 1098
AfeI AGCGCT 1 cut(s) 653
AfiI CCNNNNNNNGG 2 cut(s) 867, 1201
AflIII ACRYGT 1 cut(s) 201
AgeI ACCGGT 1 cut(s) 368
AgsI TTSAA 4 cut(s) 400, 530, 742, 818
AjiI CACGTC 2 cut(s) 80, 1274
AjnI CCWGG 6 cut(s) 28, 478, 732, 834, 886, 1085
AleI CACNNNNGTG 1 cut(s) 87
AluBI AGCT 5 cut(s) 110, 796, 1004, 1148, 1339
AluI AGCT 5 cut(s) 110, 796, 1004, 1148, 1339
Alw21I GWGCWC 1 cut(s) 112
Alw26I GTCTC 4 cut(s) 164, 172, 712, 773
AlwI GGATC 2 cut(s) 65, 1037
AlwNI CAGNNNCTG 2 cut(s) 443, 479
Aor51HI AGCGCT 1 cut(s) 653
AoxI GGCC 4 cut(s) 632, 790, 1083, 1189
ApeKI GCWGC 2 cut(s) 443, 1157
ApoI RAATTY 3 cut(s) 962, 972, 1299
AsiGI ACCGGT 1 cut(s) 368
Asp700I GAANNNNTTC 1 cut(s) 719
AspLEI GCGC 2 cut(s) 654, 1179
AspS9I GGNCC 4 cut(s) 35, 604, 632, 1083
AsuHPI GGTGA 3 cut(s) 239, 383, 1111
AsuNHI GCTAGC 1 cut(s) 796
AvaII GGWCC 2 cut(s) 35, 604
BaeI ACNNNNGTAYC 2 cut(s) 1195, 1228
BalI TGGCCA 1 cut(s) 792
BanI GGYRCC 1 cut(s) 905
BanII GRGCYC 2 cut(s) 112, 197
BauI CACGAG 1 cut(s) 1149
BbsI GAAGAC 2 cut(s) 47, 884
Bbv12I GWGCWC 1 cut(s) 112
BbvI GCAGC 2 cut(s) 430, 1144
BccI CCATC 7 cut(s) 184, 217, 281, 368, 732, 836, 1246
BceAI ACGGC 2 cut(s) 501, 1128
BciT130I CCWGG 6 cut(s) 30, 480, 734, 836, 888, 1087
BciVI GTATCC 1 cut(s) 216
BcoDI GTCTC 4 cut(s) 164, 172, 712, 773
BfaI CTAG 4 cut(s) 113, 663, 728, 797
BfoI RGCGCY 1 cut(s) 655
BfuAI ACCTGC 2 cut(s) 16, 400
BfuI GTATCC 1 cut(s) 216
BglII AGATCT 1 cut(s) 115
BisI GCNGC 2 cut(s) 444, 1158
BlsI GCNGC 2 cut(s) 445, 1159
BmcAI AGTACT 1 cut(s) 468
Bme1390I CCNGG 6 cut(s) 30, 480, 734, 836, 888, 1087
Bme18I GGWCC 2 cut(s) 35, 604
BmgBI CACGTC 2 cut(s) 80, 1274
BmgT120I GGNCC 4 cut(s) 35, 604, 632, 1083
BmiI GGNNCC 2 cut(s) 16, 907
BmrFI CCNGG 6 cut(s) 30, 480, 734, 836, 888, 1087
BmsI GCATC 6 cut(s) 238, 376, 421, 430, 464, 809
BmtI GCTAGC 1 cut(s) 800
BpiI GAAGAC 2 cut(s) 47, 884
BpmI CTGGAG 3 cut(s) 844, 1020, 1108
Bpu10I CCTNAGC 2 cut(s) 948, 1340
BsaHI GRCGYC 1 cut(s) 1359
BsaJI CCNNGG 1 cut(s) 38
BsaWI WCCGGW 1 cut(s) 368
Bsc4I CCNNNNNNNGG 2 cut(s) 867, 1201
Bse118I RCCGGY 1 cut(s) 368
Bse1I ACTGG 2 cut(s) 159, 1003
Bse3DI GCAATG 1 cut(s) 218
BseBI CCWGG 6 cut(s) 30, 480, 734, 836, 888, 1087
BseDI CCNNGG 1 cut(s) 38
BseGI GGATG 2 cut(s) 195, 1246
BseLI CCNNNNNNNGG 2 cut(s) 867, 1201
BseMI GCAATG 1 cut(s) 218
BseMII CTCAG 3 cut(s) 725, 962, 1087
BseNI ACTGG 2 cut(s) 159, 1003
BseXI GCAGC 2 cut(s) 430, 1144
BseYI CCCAGC 1 cut(s) 987
BsgI GTGCAG 1 cut(s) 1296
BshFI GGCC 4 cut(s) 634, 792, 1085, 1191
BshNI GGYRCC 1 cut(s) 905
BshTI ACCGGT 1 cut(s) 368
BsiHKAI GWGCWC 1 cut(s) 112
BsiSI CCGG 1 cut(s) 369
BslI CCNNNNNNNGG 2 cut(s) 867, 1201
BsmAI GTCTC 4 cut(s) 164, 172, 712, 773
BsmBI CGTCTC 1 cut(s) 172
BsmI GAATGC 2 cut(s) 286, 572
BsnI GGCC 4 cut(s) 634, 792, 1085, 1191
Bsp1286I GDGCHC 2 cut(s) 112, 197
Bsp143I GATC 6 cut(s) 70, 115, 148, 324, 754, 1042
BspANI GGCC 4 cut(s) 634, 792, 1085, 1191
BspCNI CTCAG 3 cut(s) 724, 961, 1086
BspLI GGNNCC 2 cut(s) 16, 907
BspMI ACCTGC 2 cut(s) 16, 400
BspOI GCTAGC 1 cut(s) 800
BspPI GGATC 2 cut(s) 65, 1037
BspQI GCTCTTC 1 cut(s) 100
BspT107I GGYRCC 1 cut(s) 905
BsrDI GCAATG 1 cut(s) 218
BsrFI RCCGGY 1 cut(s) 368
BsrI ACTGG 2 cut(s) 159, 1003
BssAI RCCGGY 1 cut(s) 368
BssECI CCNNGG 1 cut(s) 38
BssMI GATC 6 cut(s) 70, 115, 148, 324, 754, 1042
BssNI GRCGYC 1 cut(s) 1359
BssSI CACGAG 1 cut(s) 1149
BssT1I CCWWGG 1 cut(s) 38
Bst2BI CACGAG 1 cut(s) 1149
Bst2UI CCWGG 6 cut(s) 30, 480, 734, 836, 888, 1087
Bst4CI ACNGT 4 cut(s) 26, 89, 937, 1378
Bst6I CTCTTC 1 cut(s) 100
BstACI GRCGYC 1 cut(s) 1359
BstAPI GCANNNNNTGC 1 cut(s) 1283
BstC8I GCNNGC 2 cut(s) 794, 798
BstDEI CTNAG 6 cut(s) 244, 711, 948, 1073, 1292, 1340
BstF5I GGATG 2 cut(s) 195, 1246
BstH2I RGCGCY 1 cut(s) 655
BstHHI GCGC 2 cut(s) 654, 1179
BstKTI GATC 6 cut(s) 73, 118, 151, 327, 757, 1045
BstMAI GTCTC 4 cut(s) 164, 172, 712, 773
BstMBI GATC 6 cut(s) 70, 115, 148, 324, 754, 1042
BstMWI GCNNNNNNNGC 7 cut(s) 440, 452, 831, 1154, 1163, 1262, 1283
BstNI CCWGG 6 cut(s) 30, 480, 734, 836, 888, 1087
BstNSI RCATGY 1 cut(s) 205
BstSCI CCNGG 6 cut(s) 28, 478, 732, 834, 886, 1085
BstV1I GCAGC 2 cut(s) 430, 1144
BstV2I GAAGAC 2 cut(s) 47, 884
BstX2I RGATCY 1 cut(s) 115
BstYI RGATCY 1 cut(s) 115
BsuI GTATCC 1 cut(s) 216
BsuRI GGCC 4 cut(s) 634, 792, 1085, 1191
BtrI CACGTC 2 cut(s) 80, 1274
BtsCI GGATG 2 cut(s) 195, 1246
BtsIMutI CAGTG 3 cut(s) 94, 782, 1081
BveI ACCTGC 2 cut(s) 16, 400
Cac8I GCNNGC 2 cut(s) 794, 798
CaiI CAGNNNCTG 2 cut(s) 443, 479
CfoI GCGC 2 cut(s) 654, 1179
Cfr10I RCCGGY 1 cut(s) 368
Cfr13I GGNCC 4 cut(s) 35, 604, 632, 1083
CsiI ACCWGGT 1 cut(s) 886
Csp6I GTAC 4 cut(s) 5, 467, 811, 1097
CspAI ACCGGT 1 cut(s) 368
CviAII CATG 7 cut(s) 202, 877, 957, 1161, 1187, 1220, 1249
CviQI GTAC 4 cut(s) 5, 467, 811, 1097
DdeI CTNAG 6 cut(s) 244, 711, 948, 1073, 1292, 1340
DpnI GATC 6 cut(s) 72, 117, 150, 326, 756, 1044
DpnII GATC 6 cut(s) 70, 115, 148, 324, 754, 1042
DraIII CACNNNGTG 1 cut(s) 1076
DrdI GACNNNNNNGTC 1 cut(s) 1358
DseDI GACNNNNNNGTC 1 cut(s) 1358
EaeI YGGCCR 1 cut(s) 790
Eam1104I CTCTTC 1 cut(s) 100
EarI CTCTTC 1 cut(s) 100
Ecl136II GAGCTC 1 cut(s) 110
Eco130I CCWWGG 1 cut(s) 38
Eco24I GRGCYC 2 cut(s) 112, 197
Eco47I GGWCC 2 cut(s) 35, 604
Eco47III AGCGCT 1 cut(s) 653
Eco53kI GAGCTC 1 cut(s) 110
Eco57I CTGAAG 1 cut(s) 1278
EcoICRI GAGCTC 1 cut(s) 110
EcoO109I RGGNCCY 1 cut(s) 1083
EcoRII CCWGG 6 cut(s) 28, 478, 732, 834, 886, 1085
EcoT14I CCWWGG 1 cut(s) 38
EcoT38I GRGCYC 2 cut(s) 112, 197
ErhI CCWWGG 1 cut(s) 38
Esp3I CGTCTC 1 cut(s) 172
FaeI CATG 7 cut(s) 205, 880, 960, 1164, 1190, 1223, 1252
FalI AAGNNNNNCTT 4 cut(s) 227, 259, 1099, 1131
FatI CATG 7 cut(s) 201, 876, 956, 1160, 1186, 1219, 1248
FblI GTMKAC 1 cut(s) 256
Fnu4HI GCNGC 2 cut(s) 444, 1158
FokI GGATG 2 cut(s) 202, 1253
FriOI GRGCYC 2 cut(s) 112, 197
Fsp4HI GCNGC 2 cut(s) 444, 1158
FspBI CTAG 4 cut(s) 113, 663, 728, 797
GlaI GCGC 2 cut(s) 653, 1178
GluI GCNGC 2 cut(s) 444, 1158
GsaI CCCAGC 1 cut(s) 991
GsuI CTGGAG 3 cut(s) 844, 1020, 1108
HaeII RGCGCY 1 cut(s) 655
HaeIII GGCC 4 cut(s) 634, 792, 1085, 1191
HapII CCGG 1 cut(s) 369
HhaI GCGC 2 cut(s) 654, 1179
Hin1I GRCGYC 1 cut(s) 1359
Hin1II CATG 7 cut(s) 205, 880, 960, 1164, 1190, 1223, 1252
Hin6I GCGC 2 cut(s) 652, 1177
HinP1I GCGC 2 cut(s) 652, 1177
HinfI GANTC 2 cut(s) 764, 1325
HpaII CCGG 1 cut(s) 369
HphI GGTGA 3 cut(s) 239, 383, 1111
Hpy166II GTNNAC 3 cut(s) 35, 257, 811
Hpy188I TCNGA 3 cut(s) 460, 510, 714
Hpy188III TCNNGA 9 cut(s) 83, 113, 308, 663, 728, 742, 861, 1040, 1151
Hpy8I GTNNAC 3 cut(s) 35, 257, 811
Hpy99I CGWCG 2 cut(s) 1272, 1275
HpyAV CCTTC 3 cut(s) 824, 919, 1312
HpyCH4III ACNGT 4 cut(s) 26, 89, 937, 1378
HpyCH4IV ACGT 3 cut(s) 79, 1273, 1359
HpyF10VI GCNNNNNNNGC 7 cut(s) 440, 452, 831, 1154, 1163, 1262, 1283
HpyF3I CTNAG 6 cut(s) 244, 711, 948, 1073, 1292, 1340
HpySE526I ACGT 3 cut(s) 79, 1273, 1359
Hsp92I GRCGYC 1 cut(s) 1359
Hsp92II CATG 7 cut(s) 205, 880, 960, 1164, 1190, 1223, 1252
HspAI GCGC 2 cut(s) 652, 1177
Kzo9I GATC 6 cut(s) 70, 115, 148, 324, 754, 1042
LguI GCTCTTC 1 cut(s) 100
LmnI GCTCC 2 cut(s) 863, 1001
Lsp1109I GCAGC 2 cut(s) 430, 1144
LweI GCATC 6 cut(s) 238, 376, 421, 430, 464, 809
MabI ACCWGGT 1 cut(s) 886
MaeI CTAG 4 cut(s) 113, 663, 728, 797
MaeII ACGT 3 cut(s) 79, 1273, 1359
MaeIII GTNAC 2 cut(s) 80, 850
MalI GATC 6 cut(s) 72, 117, 150, 326, 756, 1044
MboI GATC 6 cut(s) 70, 115, 148, 324, 754, 1042
MfeI CAATTG 1 cut(s) 159
MflI RGATCY 1 cut(s) 115
MhlI GDGCHC 2 cut(s) 112, 197
MlsI TGGCCA 1 cut(s) 792
MluCI AATT 9 cut(s) 159, 261, 342, 417, 643, 843, 962, 972, 1299
MluNI TGGCCA 1 cut(s) 792
MlyI GAGTC 2 cut(s) 773, 1334
MmeI TCCRAC 2 cut(s) 340, 974
MnlI CCTC 7 cut(s) 603, 617, 857, 1074, 1147, 1202, 1218
Mox20I TGGCCA 1 cut(s) 792
MroXI GAANNNNTTC 1 cut(s) 719
MscI TGGCCA 1 cut(s) 792
MseI TTAA 5 cut(s) 132, 345, 381, 624, 690
MslI CAYNNNNRTG 2 cut(s) 87, 318
Msp20I TGGCCA 1 cut(s) 792
MspI CCGG 1 cut(s) 369
MspR9I CCNGG 6 cut(s) 30, 480, 734, 836, 888, 1087
MunI CAATTG 1 cut(s) 159
Mva1269I GAATGC 2 cut(s) 286, 572
MvaI CCWGG 6 cut(s) 30, 480, 734, 836, 888, 1087
MwoI GCNNNNNNNGC 7 cut(s) 440, 452, 831, 1154, 1163, 1262, 1283
NdeII GATC 6 cut(s) 70, 115, 148, 324, 754, 1042
NheI GCTAGC 1 cut(s) 796
NlaIII CATG 7 cut(s) 205, 880, 960, 1164, 1190, 1223, 1252
NlaIV GGNNCC 2 cut(s) 16, 907
NmuCI GTSAC 1 cut(s) 80
NspI RCATGY 1 cut(s) 205
OliI CACNNNNGTG 1 cut(s) 87
PaqCI CACCTGC 1 cut(s) 400
PciI ACATGT 1 cut(s) 201
PciSI GCTCTTC 1 cut(s) 100
PctI GAATGC 2 cut(s) 286, 572
PdmI GAANNNNTTC 1 cut(s) 719
PflFI GACNNNGTC 1 cut(s) 888
PflMI CCANNNNNTGG 1 cut(s) 867
PinAI ACCGGT 1 cut(s) 368
PkrI GCNGC 2 cut(s) 445, 1159
PleI GAGTC 2 cut(s) 772, 1333
PpsI GAGTC 2 cut(s) 772, 1333
PscI ACATGT 1 cut(s) 201
PsiI TTATAA 1 cut(s) 1025
Psp124BI GAGCTC 1 cut(s) 112
Psp6I CCWGG 6 cut(s) 28, 478, 732, 834, 886, 1085
PspFI CCCAGC 1 cut(s) 987
PspGI CCWGG 6 cut(s) 28, 478, 732, 834, 886, 1085
PspN4I GGNNCC 2 cut(s) 16, 907
PspPI GGNCC 4 cut(s) 35, 604, 632, 1083
PstNI CAGNNNCTG 2 cut(s) 443, 479
PsuI RGATCY 1 cut(s) 115
PsyI GACNNNGTC 1 cut(s) 888
RsaI GTAC 4 cut(s) 6, 468, 812, 1098
RsaNI GTAC 4 cut(s) 5, 467, 811, 1097
RseI CAYNNNNRTG 2 cut(s) 87, 318
SacI GAGCTC 1 cut(s) 112
SapI GCTCTTC 1 cut(s) 100
SaqAI TTAA 5 cut(s) 132, 345, 381, 624, 690
SatI GCNGC 2 cut(s) 444, 1158
Sau3AI GATC 6 cut(s) 70, 115, 148, 324, 754, 1042
Sau96I GGNCC 4 cut(s) 35, 604, 632, 1083
ScaI AGTACT 1 cut(s) 468
SchI GAGTC 2 cut(s) 773, 1334
ScrFI CCNGG 6 cut(s) 30, 480, 734, 836, 888, 1087
SduI GDGCHC 2 cut(s) 112, 197
SexAI ACCWGGT 1 cut(s) 886
SfaNI GCATC 6 cut(s) 238, 376, 421, 430, 464, 809
SinI GGWCC 2 cut(s) 35, 604
SmiMI CAYNNNNRTG 2 cut(s) 87, 318
Sse9I AATT 9 cut(s) 159, 261, 342, 417, 643, 843, 962, 972, 1299
SspMI CTAG 4 cut(s) 113, 663, 728, 797
SstI GAGCTC 1 cut(s) 112
StyD4I CCNGG 6 cut(s) 28, 478, 732, 834, 886, 1085
StyI CCWWGG 1 cut(s) 38
TaaI ACNGT 4 cut(s) 26, 89, 937, 1378
TaiI ACGT 3 cut(s) 82, 1276, 1362
TaqI TCGA 1 cut(s) 767
TasI AATT 9 cut(s) 159, 261, 342, 417, 643, 843, 962, 972, 1299
TatI WGTACW 1 cut(s) 466
Tru1I TTAA 5 cut(s) 132, 345, 381, 624, 690
Tru9I TTAA 5 cut(s) 132, 345, 381, 624, 690
TscAI CASTG 3 cut(s) 94, 789, 1081
TseFI GTSAC 1 cut(s) 80
TseI GCWGC 2 cut(s) 443, 1157
Tsp45I GTSAC 1 cut(s) 80
TspDTI ATGAA 8 cut(s) 207, 282, 551, 693, 865, 901, 965, 1175
TspRI CASTG 3 cut(s) 94, 789, 1081
Tth111I GACNNNGTC 1 cut(s) 888
Van91I CCANNNNNTGG 1 cut(s) 867
VpaK11BI GGWCC 2 cut(s) 35, 604
XapI RAATTY 3 cut(s) 962, 972, 1299
XbaI TCTAGA 3 cut(s) 112, 662, 727
XceI RCATGY 1 cut(s) 205
XcmI CCANNNNNNNNNTGG 1 cut(s) 1133
XmiI GTMKAC 1 cut(s) 256
XmnI GAANNNNTTC 1 cut(s) 719
XspI CTAG 4 cut(s) 113, 663, 728, 797
ZraI GACGTC 1 cut(s) 1360
ZrmI AGTACT 1 cut(s) 468
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.