Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0002698

Physical Location & Seq

Genomic Coordinates Reverse (-)

25992541 .. 25992909

Gene Structure 369 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0188000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGAAAATCGACGCCGCCTACCCACCTCCGGCGAAGCGATCCGCGGTGTCCTCCTTGGACAATCCAGACAAACCATTCTTTGGCCGACCGAGCTACGACGTCGTGATCGCCGGGAAGGTCTCCGGGCGGAAGTGGAAGCAGCCGCGGAAGCAGAGGTCGTCGGCGGTTCAGGTGAGCCGGAAGGGGACGACGTTCGAGGAGAGGGAGAAGAACAACTCGGTGAAGAAGGCGTACAAGGAGAGAATGGCGGAGCTGAAGGGGGAGATTAAGAGGAACAAGGAGGAGAAGAGGAGGAAGAGGGAGGAGAGGGAGAAGAAGAAGAAAATGGGACCAAGCTGCAGATTATTTCCAAAAAAAAGGGCTGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00190 map00190

Pfam Domains

Protein Families

Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

122

Amino Acids

14.15

Weight (kDa)

10.57

Isoelectric Point (pI)

71.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cgr1	PF03879	38 - 108	5.4e-07	Cgr1 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002698)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60330 AT3G60330 AT3G60330 AT3G60330
fragaria_vesca	FvH4_5g19790 FvH4_7g09980
malus_domestica	MD02G1216000.v1.1 MD03G1197700.v1.1 MD03G1197800.v1.1 MD04G1058300.v1.1
prunus_persica	Prupe.2G128800_v2.0.a1 Prupe.5G062200_v2.0.a1
pyrus_communis	pycom04g05210
rosa_chinensis	RchiOBHm_Chr1g0347581 RchiOBHm_Chr4g0412601 RchiOBHm_Chr7g0204571
rosa_laevigata	RLG00000003448 RLG00000028736 RLG00000030415
rosa_multiflora	Rmu_sc0001211.1_g000115 Rmu_sc0005397.1_g000001 Rmu_sc0007327.1_g000001 Rmu_sc0021384.1_g000002 Rmu_sc0024460.1_g000001 Rmu_sc0027638.1_g000006
rosa_roxburghii	Rroxscaffold_3G00252980 Rroxscaffold_4G00307640 Rroxscaffold_4G00307710
rosa_rugosa	Rorug01G0188000 Rorug07G0085200
rosa_samantha	Rh1DG200900 Rh7AG214600 Rh7BG212100 Rh7CG227700 Rh7DG222300
rosa_wichuraiana	Rw0G013650 Rw0G018200 Rw1G017220 Rw7G018620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	102
AccB7I	CCANNNNNTGG	1 cut(s)	80
AccII	CGCG	2 cut(s)	44, 145
AciI	CCGC	8 cut(s)	15, 42, 44, 127, 143, 145, 164, 248
AclWI	GGATC	1 cut(s)	33
AcoI	YGGCCR	1 cut(s)	82
AcuI	CTGAAG	1 cut(s)	275
AcyI	GRCGYC	2 cut(s)	12, 99
AfaI	GTAC	1 cut(s)	233
AfiI	CCNNNNNNNGG	2 cut(s)	28, 80
AluBI	AGCT	3 cut(s)	93, 253, 336
AluI	AGCT	3 cut(s)	93, 253, 336
Alw26I	GTCTC	1 cut(s)	124
AlwI	GGATC	1 cut(s)	33
AoxI	GGCC	1 cut(s)	82
ApeKI	GCWGC	2 cut(s)	139, 336
AspS9I	GGNCC	1 cut(s)	329
AsuC2I	CCSGG	2 cut(s)	112, 124
AsuHPI	GGTGA	2 cut(s)	184, 232
AvaII	GGWCC	1 cut(s)	329
BarI	GAAGNNNNNNTAC	2 cut(s)	215, 247
BbvI	GCAGC	2 cut(s)	151, 323
BcnI	CCSGG	2 cut(s)	112, 124
BcoDI	GTCTC	1 cut(s)	124
BfmI	CTRYAG	1 cut(s)	337
BisI	GCNGC	4 cut(s)	15, 140, 143, 337
BlsI	GCNGC	4 cut(s)	16, 141, 144, 338
Bme1390I	CCNGG	2 cut(s)	112, 124
Bme18I	GGWCC	1 cut(s)	329
BmgT120I	GGNCC	1 cut(s)	329
BmiI	GGNNCC	1 cut(s)	330
BmrFI	CCNGG	2 cut(s)	112, 124
BpuMI	CCSGG	2 cut(s)	112, 124
BsaHI	GRCGYC	2 cut(s)	12, 99
BsaI	GGTCTC	1 cut(s)	124
BsaJI	CCNNGG	3 cut(s)	42, 54, 143
Bsc4I	CCNNNNNNNGG	2 cut(s)	28, 80
BseDI	CCNNGG	3 cut(s)	42, 54, 143
BseLI	CCNNNNNNNGG	2 cut(s)	28, 80
BseRI	GAGGAG	4 cut(s)	212, 296, 304, 317
BseXI	GCAGC	2 cut(s)	151, 323
BseYI	CCCAGC	1 cut(s)	362
Bsh1236I	CGCG	2 cut(s)	44, 145
Bsh1285I	CGRYCG	1 cut(s)	89
BshFI	GGCC	1 cut(s)	84
BsiEI	CGRYCG	1 cut(s)	89
BsiSI	CCGG	4 cut(s)	29, 111, 123, 178
BslFI	GGGAC	2 cut(s)	199, 342
BslI	CCNNNNNNNGG	2 cut(s)	28, 80
BsmAI	GTCTC	1 cut(s)	124
BsmFI	GGGAC	2 cut(s)	199, 342
BsnI	GGCC	1 cut(s)	84
Bso31I	GGTCTC	1 cut(s)	124
Bsp143I	GATC	2 cut(s)	38, 105
BspACI	CCGC	8 cut(s)	15, 42, 44, 127, 143, 145, 164, 248
BspANI	GGCC	1 cut(s)	84
BspFNI	CGCG	2 cut(s)	44, 145
BspLI	GGNNCC	1 cut(s)	330
BspMAI	CTGCAG	1 cut(s)	341
BspPI	GGATC	1 cut(s)	33
BspTNI	GGTCTC	1 cut(s)	124
BssECI	CCNNGG	3 cut(s)	42, 54, 143
BssMI	GATC	2 cut(s)	38, 105
BssNI	GRCGYC	2 cut(s)	12, 99
BssT1I	CCWWGG	1 cut(s)	54
Bst6I	CTCTTC	2 cut(s)	281, 290
BstACI	GRCGYC	2 cut(s)	12, 99
BstDSI	CCRYGG	2 cut(s)	42, 143
BstFNI	CGCG	2 cut(s)	44, 145
BstKTI	GATC	2 cut(s)	41, 108
BstMAI	GTCTC	1 cut(s)	124
BstMBI	GATC	2 cut(s)	38, 105
BstMCI	CGRYCG	1 cut(s)	89
BstMWI	GCNNNNNNNGC	2 cut(s)	90, 148
BstSCI	CCNGG	2 cut(s)	110, 122
BstSFI	CTRYAG	1 cut(s)	337
BstUI	CGCG	2 cut(s)	44, 145
BstV1I	GCAGC	2 cut(s)	151, 323
BsuRI	GGCC	1 cut(s)	84
BtgI	CCRYGG	2 cut(s)	42, 143
Cfr13I	GGNCC	1 cut(s)	329
Cfr42I	CCGCGG	2 cut(s)	45, 146
CseI	GACGC	1 cut(s)	20
Csp6I	GTAC	1 cut(s)	232
CviJI	RGCY	7 cut(s)	84, 93, 142, 177, 253, 336, 362
CviKI_1	RGCY	7 cut(s)	84, 93, 142, 177, 253, 336, 362
CviQI	GTAC	1 cut(s)	232
DpnI	GATC	2 cut(s)	40, 107
DpnII	GATC	2 cut(s)	38, 105
EaeI	YGGCCR	1 cut(s)	82
Eam1104I	CTCTTC	2 cut(s)	281, 290
EarI	CTCTTC	2 cut(s)	281, 290
EciI	GGCGGA	2 cut(s)	142, 263
Eco130I	CCWWGG	1 cut(s)	54
Eco31I	GGTCTC	1 cut(s)	124
Eco47I	GGWCC	1 cut(s)	329
Eco57I	CTGAAG	1 cut(s)	275
EcoT14I	CCWWGG	1 cut(s)	54
ErhI	CCWWGG	1 cut(s)	54
FaqI	GGGAC	2 cut(s)	199, 342
Fnu4HI	GCNGC	4 cut(s)	15, 140, 143, 337
Fsp4HI	GCNGC	4 cut(s)	15, 140, 143, 337
GluI	GCNGC	4 cut(s)	15, 140, 143, 337
GsaI	CCCAGC	1 cut(s)	366
HaeIII	GGCC	1 cut(s)	84
HapII	CCGG	4 cut(s)	29, 111, 123, 178
HgaI	GACGC	1 cut(s)	20
Hin1I	GRCGYC	2 cut(s)	12, 99
HpaII	CCGG	4 cut(s)	29, 111, 123, 178
HphI	GGTGA	2 cut(s)	184, 232
Hpy188III	TCNNGA	2 cut(s)	65, 103
Hpy99I	CGWCG	5 cut(s)	14, 101, 104, 163, 193
HpyAV	CCTTC	4 cut(s)	109, 175, 220, 250
HpyCH4IV	ACGT	2 cut(s)	99, 191
HpyCH4V	TGCA	1 cut(s)	339
HpyF10VI	GCNNNNNNNGC	2 cut(s)	90, 148
HpySE526I	ACGT	2 cut(s)	99, 191
Hsp92I	GRCGYC	2 cut(s)	12, 99
KspI	CCGCGG	2 cut(s)	45, 146
Kzo9I	GATC	2 cut(s)	38, 105
LmnI	GCTCC	1 cut(s)	250
LpnPI	CCDG	7 cut(s)	42, 78, 124, 136, 155, 191, 348
Lsp1109I	GCAGC	2 cut(s)	151, 323
MaeII	ACGT	2 cut(s)	99, 191
MalI	GATC	2 cut(s)	40, 107
MboI	GATC	2 cut(s)	38, 105
MboII	GAAGA	7 cut(s)	220, 235, 298, 307, 325, 328, 331
MseI	TTAA	1 cut(s)	267
MspA1I	CMGCKG	2 cut(s)	44, 145
MspI	CCGG	4 cut(s)	29, 111, 123, 178
MspR9I	CCNGG	2 cut(s)	112, 124
MvnI	CGCG	2 cut(s)	44, 145
MwoI	GCNNNNNNNGC	2 cut(s)	90, 148
NciI	CCSGG	2 cut(s)	112, 124
NdeII	GATC	2 cut(s)	38, 105
NlaIV	GGNNCC	1 cut(s)	330
PflMI	CCANNNNNTGG	1 cut(s)	80
PkrI	GCNGC	4 cut(s)	16, 141, 144, 338
PspFI	CCCAGC	1 cut(s)	362
PspN4I	GGNNCC	1 cut(s)	330
PspPI	GGNCC	1 cut(s)	329
PstI	CTGCAG	1 cut(s)	341
RsaI	GTAC	1 cut(s)	233
RsaNI	GTAC	1 cut(s)	232
SacII	CCGCGG	2 cut(s)	45, 146
SaqAI	TTAA	1 cut(s)	267
SatI	GCNGC	4 cut(s)	15, 140, 143, 337
Sau3AI	GATC	2 cut(s)	38, 105
Sau96I	GGNCC	1 cut(s)	329
ScrFI	CCNGG	2 cut(s)	112, 124
SetI	ASST	9 cut(s)	28, 95, 102, 120, 158, 174, 194, 255, 338
SfcI	CTRYAG	1 cut(s)	337
Sfr303I	CCGCGG	2 cut(s)	45, 146
SgrBI	CCGCGG	2 cut(s)	45, 146
SinI	GGWCC	1 cut(s)	329
SsiI	CCGC	8 cut(s)	15, 42, 44, 127, 143, 145, 164, 248
StyD4I	CCNGG	2 cut(s)	110, 122
StyI	CCWWGG	1 cut(s)	54
TaiI	ACGT	2 cut(s)	102, 194
TaqI	TCGA	2 cut(s)	9, 195
TaqII	GACCGA	1 cut(s)	103
TauI	GCSGC	2 cut(s)	17, 145
Tru1I	TTAA	1 cut(s)	267
Tru9I	TTAA	1 cut(s)	267
TseI	GCWGC	2 cut(s)	139, 336
TspDTI	ATGAA	1 cut(s)	17
Van91I	CCANNNNNTGG	1 cut(s)	80
VpaK11BI	GGWCC	1 cut(s)	329
ZraI	GACGTC	1 cut(s)	100

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.