Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0002698

Physical Location & Seq

Genomic Coordinates Forward (+)

29139337 .. 29140434

Gene Structure 1098 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00307710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGGGCACAAACATGTATCCCTCTTCAGCTCTTCTTGGTGAAAGTAAGAATATTAATATTGCTACTACTCTTATCGATAAACTTATTGAAAAGGCTGATGGTTTTGCTGGCGTCACTCCTGAGCATAAGTATGAGATTGTGAACAGATTTCATGCTCTAAACCACATCTGTGGAGTGACTGGTGATGGAGTAAATGATACGCTGGCTTTAAAGAAAGCCGATATTGGAATTGCTGTACCAAATTCCACAGATGTTTCCCGTAGTGCTTCTGATATAGTTTTAACAGAACCTGGGGTGGGTGTAATCATTAGTGCTGTATTAACAAGCCATGAAATCTTCCAGAGATCGATTGCATTAAATAATTTTCCTGCTCGTCACCCAACTTATTGCTTTCTTATAGGTACTATCATGACAATACCTAAAGACAGGGTCAAGCCATCTCCAGTTCCTGACAGGTGGAGGTTCACCGAAATTCTTGTAACTGGGGTTGCCCTGGGTAGTTACTTGTCACTAATGACTGTTATATTCTTCTGGGTAGCCTCTGAAACTGACTTCTTTCCTGTAAGTCGCAGTGGTCTCCCTTTTCTTATTATAAGCTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00190 map00190

Pfam Domains

Protein Families

Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

200

Amino Acids

21.71

Weight (kDa)

6.19

Isoelectric Point (pI)

45.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002698)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60330 AT3G60330 AT3G60330 AT3G60330
fragaria_vesca	FvH4_5g19790 FvH4_7g09980
malus_domestica	MD02G1216000.v1.1 MD03G1197700.v1.1 MD03G1197800.v1.1 MD04G1058300.v1.1
prunus_persica	Prupe.2G128800_v2.0.a1 Prupe.5G062200_v2.0.a1
pyrus_communis	pycom04g05210
rosa_chinensis	RchiOBHm_Chr1g0347581 RchiOBHm_Chr4g0412601 RchiOBHm_Chr7g0204571
rosa_laevigata	RLG00000003448 RLG00000028736 RLG00000030415
rosa_multiflora	Rmu_sc0001211.1_g000115 Rmu_sc0005397.1_g000001 Rmu_sc0007327.1_g000001 Rmu_sc0021384.1_g000002 Rmu_sc0024460.1_g000001 Rmu_sc0027638.1_g000006
rosa_roxburghii	Rroxscaffold_3G00252980 Rroxscaffold_4G00307640 Rroxscaffold_4G00307710
rosa_rugosa	Rorug01G0188000 Rorug07G0085200
rosa_samantha	Rh1DG200900 Rh7AG214600 Rh7BG212100 Rh7CG227700 Rh7DG222300
rosa_wichuraiana	Rw0G013650 Rw0G018200 Rw1G017220 Rw7G018620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	593
AcsI	RAATTY	2 cut(s)	241, 471
AcuI	CTGAAG	1 cut(s)	9
AcyI	GRCGYC	1 cut(s)	111
AfaI	GTAC	2 cut(s)	237, 403
AfiI	CCNNNNNNNGG	1 cut(s)	296
AflIII	ACRYGT	1 cut(s)	12
AgsI	TTSAA	1 cut(s)	89
AjnI	CCWGG	2 cut(s)	289, 492
AleI	CACNNNNGTG	1 cut(s)	168
AluBI	AGCT	2 cut(s)	29, 597
AluI	AGCT	2 cut(s)	29, 597
Alw26I	GTCTC	1 cut(s)	581
AlwNI	CAGNNNCTG	2 cut(s)	290, 449
ApoI	RAATTY	2 cut(s)	241, 471
AseI	ATTAAT	1 cut(s)	54
AsuHPI	GGTGA	4 cut(s)	50, 194, 368, 457
BaeGI	GKGCMC	1 cut(s)	8
BccI	CCATC	3 cut(s)	92, 179, 445
BciT130I	CCWGG	2 cut(s)	291, 494
BciVI	GTATCC	1 cut(s)	27
BcoDI	GTCTC	1 cut(s)	581
BfuI	GTATCC	1 cut(s)	27
Bme1390I	CCNGG	2 cut(s)	291, 494
BmrFI	CCNGG	2 cut(s)	291, 494
BmrI	ACTGGG	1 cut(s)	492
BmuI	ACTGGG	1 cut(s)	492
BpmI	CTGGAG	1 cut(s)	426
Bpu10I	CCTNAGC	1 cut(s)	120
Bsa29I	ATCGAT	2 cut(s)	75, 347
BsaHI	GRCGYC	1 cut(s)	111
BsaI	GGTCTC	1 cut(s)	581
BsaJI	CCNNGG	3 cut(s)	290, 492, 493
Bsc4I	CCNNNNNNNGG	1 cut(s)	296
Bse1I	ACTGG	3 cut(s)	184, 443, 487
BseBI	CCWGG	2 cut(s)	291, 494
BseCI	ATCGAT	2 cut(s)	75, 347
BseDI	CCNNGG	3 cut(s)	290, 492, 493
BseLI	CCNNNNNNNGG	1 cut(s)	296
BseMII	CTCAG	1 cut(s)	111
BseNI	ACTGG	3 cut(s)	184, 443, 487
BseSI	GKGCMC	1 cut(s)	8
BshVI	ATCGAT	2 cut(s)	75, 347
BslI	CCNNNNNNNGG	1 cut(s)	296
BsmAI	GTCTC	1 cut(s)	581
Bso31I	GGTCTC	1 cut(s)	581
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	1 cut(s)	344
BspCNI	CTCAG	1 cut(s)	112
BspDI	ATCGAT	2 cut(s)	75, 347
BspHI	TCATGA	1 cut(s)	408
BspQI	GCTCTTC	1 cut(s)	36
BspTNI	GGTCTC	1 cut(s)	581
BsrI	ACTGG	3 cut(s)	184, 443, 487
BssECI	CCNNGG	3 cut(s)	290, 492, 493
BssMI	GATC	1 cut(s)	344
BssNI	GRCGYC	1 cut(s)	111
Bst2UI	CCWGG	2 cut(s)	291, 494
Bst4CI	ACNGT	1 cut(s)	520
Bst6I	CTCTTC	2 cut(s)	28, 36
BstACI	GRCGYC	1 cut(s)	111
BstC8I	GCNNGC	2 cut(s)	109, 204
BstDEI	CTNAG	1 cut(s)	120
BstKTI	GATC	1 cut(s)	347
BstMAI	GTCTC	1 cut(s)	581
BstMBI	GATC	1 cut(s)	344
BstNI	CCWGG	2 cut(s)	291, 494
BstNSI	RCATGY	1 cut(s)	16
BstSCI	CCNGG	2 cut(s)	289, 492
BstSLI	GKGCMC	1 cut(s)	8
BstXI	CCANNNNNNTGG	1 cut(s)	170
Bsu15I	ATCGAT	2 cut(s)	75, 347
BsuI	GTATCC	1 cut(s)	27
BsuTUI	ATCGAT	2 cut(s)	75, 347
BtsI	GCAGTG	1 cut(s)	577
BtsIMutI	CAGTG	1 cut(s)	577
Cac8I	GCNNGC	2 cut(s)	109, 204
CaiI	CAGNNNCTG	2 cut(s)	290, 449
CciI	TCATGA	1 cut(s)	408
ClaI	ATCGAT	2 cut(s)	75, 347
CseI	GACGC	1 cut(s)	100
Csp6I	GTAC	2 cut(s)	236, 402
CviAII	CATG	4 cut(s)	13, 152, 329, 409
CviJI	RGCY	8 cut(s)	29, 95, 206, 218, 327, 436, 539, 597
CviKI_1	RGCY	8 cut(s)	29, 95, 206, 218, 327, 436, 539, 597
CviQI	GTAC	2 cut(s)	236, 402
DdeI	CTNAG	1 cut(s)	120
DpnI	GATC	1 cut(s)	346
DpnII	GATC	1 cut(s)	344
DraI	TTTAAA	1 cut(s)	210
Eam1104I	CTCTTC	2 cut(s)	28, 36
EarI	CTCTTC	2 cut(s)	28, 36
Eco31I	GGTCTC	1 cut(s)	581
Eco57I	CTGAAG	1 cut(s)	9
EcoRII	CCWGG	2 cut(s)	289, 492
FaeI	CATG	4 cut(s)	16, 155, 332, 412
FatI	CATG	4 cut(s)	12, 151, 328, 408
GsuI	CTGGAG	1 cut(s)	426
HgaI	GACGC	1 cut(s)	100
Hin1I	GRCGYC	1 cut(s)	111
Hin1II	CATG	4 cut(s)	16, 155, 332, 412
HphI	GGTGA	4 cut(s)	50, 194, 368, 457
Hpy166II	GTNNAC	2 cut(s)	142, 465
Hpy188I	TCNGA	2 cut(s)	271, 544
Hpy188III	TCNNGA	4 cut(s)	119, 340, 409, 449
Hpy8I	GTNNAC	2 cut(s)	142, 465
HpyCH4III	ACNGT	1 cut(s)	520
HpyCH4V	TGCA	1 cut(s)	353
HpyF3I	CTNAG	1 cut(s)	120
Hsp92I	GRCGYC	1 cut(s)	111
Hsp92II	CATG	4 cut(s)	16, 155, 332, 412
Kzo9I	GATC	1 cut(s)	344
LguI	GCTCTTC	1 cut(s)	36
MaeIII	GTNAC	6 cut(s)	112, 175, 374, 478, 500, 507
MalI	GATC	1 cut(s)	346
MboI	GATC	1 cut(s)	344
MboII	GAAGA	4 cut(s)	15, 23, 328, 520
MhlI	GDGCHC	1 cut(s)	8
MluCI	AATT	4 cut(s)	228, 241, 361, 471
MnlI	CCTC	3 cut(s)	31, 453, 550
MseI	TTAA	6 cut(s)	54, 209, 281, 320, 356, 601
MslI	CAYNNNNRTG	3 cut(s)	11, 129, 168
MspR9I	CCNGG	2 cut(s)	291, 494
MvaI	CCWGG	2 cut(s)	291, 494
NdeII	GATC	1 cut(s)	344
NlaIII	CATG	4 cut(s)	16, 155, 332, 412
NmuCI	GTSAC	4 cut(s)	112, 175, 374, 507
NspI	RCATGY	1 cut(s)	16
OliI	CACNNNNGTG	1 cut(s)	168
PagI	TCATGA	1 cut(s)	408
PasI	CCCWGGG	1 cut(s)	493
PciI	ACATGT	1 cut(s)	12
PciSI	GCTCTTC	1 cut(s)	36
PflFI	GACNNNGTC	1 cut(s)	428
PscI	ACATGT	1 cut(s)	12
PshBI	ATTAAT	1 cut(s)	54
PsiI	TTATAA	1 cut(s)	593
Psp6I	CCWGG	2 cut(s)	289, 492
PspGI	CCWGG	2 cut(s)	289, 492
PstNI	CAGNNNCTG	2 cut(s)	290, 449
PsyI	GACNNNGTC	1 cut(s)	428
RsaI	GTAC	2 cut(s)	237, 403
RsaNI	GTAC	2 cut(s)	236, 402
RseI	CAYNNNNRTG	3 cut(s)	11, 129, 168
SapI	GCTCTTC	1 cut(s)	36
SaqAI	TTAA	6 cut(s)	54, 209, 281, 320, 356, 601
Sau3AI	GATC	1 cut(s)	344
ScrFI	CCNGG	2 cut(s)	291, 494
SduI	GDGCHC	1 cut(s)	8
SetI	ASST	7 cut(s)	31, 292, 403, 421, 458, 464, 599
SmiMI	CAYNNNNRTG	3 cut(s)	11, 129, 168
Sse9I	AATT	4 cut(s)	228, 241, 361, 471
SspI	AATATT	2 cut(s)	52, 58
StyD4I	CCNGG	2 cut(s)	289, 492
TaaI	ACNGT	1 cut(s)	520
TaqI	TCGA	2 cut(s)	75, 347
TasI	AATT	4 cut(s)	228, 241, 361, 471
Tru1I	TTAA	6 cut(s)	54, 209, 281, 320, 356, 601
Tru9I	TTAA	6 cut(s)	54, 209, 281, 320, 356, 601
TscAI	CASTG	1 cut(s)	577
TseFI	GTSAC	4 cut(s)	112, 175, 374, 507
Tsp45I	GTSAC	4 cut(s)	112, 175, 374, 507
TspDTI	ATGAA	2 cut(s)	140, 345
TspRI	CASTG	1 cut(s)	577
Tth111I	GACNNNGTC	1 cut(s)	428
VspI	ATTAAT	1 cut(s)	54
XapI	RAATTY	2 cut(s)	241, 471
XceI	RCATGY	1 cut(s)	16

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.