Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006153.1

Orthogroup ID

OG0006417

Physical Location & Seq

Genomic Coordinates Reverse (-)

100963 .. 103343

Gene Structure 2381 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006153.1_g000027.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1374 bp

atggagaaaattgaggtcagtattatttcccgagacaccattaaaccatcagctgcttcctcttcactacacccttacaagctttccatcatcgatcagttcactcccacaacgtatttcccagttatattcttctaccccattactgaccgtgtcttcaatcttcctcaaaccttaaccgacttgaaaaacactgtttcccaggctctcactttgtaccatccactctccgggaggataaaaaacaacctatacattgatgatttcgaagcaggcatcccctaccttgaggcccgagtgaattttcacatgattgattttctaaggcttccgaaaatcgagtggctaaatgagtttgttccaatggctccatatcgcaaggaaacaatatctgagtttcttcccttgcttggaattcaagtaaacattttcgactctggaatagcaatcggtgtctctttctctcacaagatcaacgatggccaaacggcaagctgttttctcaagtcctgggttgctatttttcgtgggtatcgtaacaaaatcatacatcctaatctctctcaagctgcattacttttgccatcgagggatgacttgcctgaaaagtacgtagctatgatggaaaggatgtggtttggcgagaaaaaagttgttacaaggagatttgtatttgatgcgaaagccatatccgcacttcaagatgaagggaagagcgaatacgtgcccaagccatcacgtgttcaggccctcactggttttctctggaaacatcaactcgctgcttctcgggcattatcatcaggtacttcaacaagattttccgtagcatcacagacagtgaacttaaggtcaaaaatgaacatgaaaacgacgttggacaatgccattggtaatatctttttgtgggcttcggcacggctagatctaaatgatacagcaccagggagcagtgatcttaagttgtgtgacttggttaacttactcaatgaatctatcaaagaatttaacagtgattacttggagattttgaagggtaaagagggatatggaggcatgtgtgatttgctagatttcatggaagaagggagttttgtagaaccagcaccagagttttattcattctcaagctggactagattttttgaccaagttgattttggatgggggaggccatcttgggttggattctcggggagagttgaaactagaaatttcacaatattcgttgaaacacaatgcgatgacggaattgatgcgtgggtgactgtagatgaaaaacaaatggctatgctagaacaagatccacagtttttagcatttgcatctccaaacccccgaatttcaatagcctcttcagttggtatggattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006807 GO:0008150 GO:0008152 GO:0009820 GO:0016740 GO:0016746 GO:0016747 GO:0050636 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110

Pfam Domains

Protein Families

Transferase

Protein Analysis

457

Amino Acids

51.76

Weight (kDa)

5.46

Isoelectric Point (pI)

34.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006417)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g40060 FvH4_7g18570 FvH4_7g18570 FvH4_7g18570 FvH4_7g18640
rosa_chinensis	RchiOBHm_Chr1g0362351 RchiOBHm_Chr2g0101451 RchiOBHm_Chr2g0101491
rosa_laevigata	RLG00000017082 RLG00000027650
rosa_multiflora	Rmu_co8521771.1_g000002 Rmu_sc0006153.1_g000027 Rmu_sc0006153.1_g000054
rosa_roxburghii	Rroxscaffold_2G00141300 Rroxscaffold_4G00294230
rosa_rugosa	Rorug01G0297800 Rorug02G0098200
rosa_samantha	Rh1AG306500 Rh1BG270000 Rh1CG287500 Rh1DG300200 Rh2AG147100 Rh2CG153000 Rh2CG153300 Rh2DG152500
rosa_wichuraiana	Rw1G027210 Rw2G011470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	693
AclWI	GGATC	1 cut(s)	1298
AcoI	YGGCCR	1 cut(s)	481
AcsI	RAATTY	5 cut(s)	301, 414, 1004, 1213, 1341
AcuI	CTGAAG	1 cut(s)	1341
AcvI	CACGTG	1 cut(s)	740
AfaI	GTAC	3 cut(s)	218, 611, 808
AfiI	CCNNNNNNNGG	2 cut(s)	230, 410
AflII	CTTAAG	2 cut(s)	847, 959
AflIII	ACRYGT	1 cut(s)	739
AgsI	TTSAA	9 cut(s)	160, 187, 419, 701, 813, 1033, 1205, 1232, 1347
AjnI	CCWGG	3 cut(s)	201, 509, 943
AjuI	GAANNNNNNNTTGG	2 cut(s)	860, 892
AluBI	AGCT	6 cut(s)	53, 82, 495, 569, 617, 1131
AluI	AGCT	6 cut(s)	53, 82, 495, 569, 617, 1131
Alw26I	GTCTC	2 cut(s)	27, 460
AlwI	GGATC	1 cut(s)	1298
Ama87I	CYCGRG	4 cut(s)	30, 294, 789, 1192
AoxI	GGCC	4 cut(s)	291, 481, 747, 1172
ApeKI	GCWGC	3 cut(s)	53, 569, 782
ApoI	RAATTY	5 cut(s)	301, 414, 1004, 1213, 1341
AspS9I	GGNCC	2 cut(s)	292, 748
AsuC2I	CCSGG	1 cut(s)	232
AsuHPI	GGTGA	1 cut(s)	1276
AsuII	TTCGAA	1 cut(s)	267
AvaI	CYCGRG	4 cut(s)	30, 294, 789, 1192
BaeGI	GKGCMC	1 cut(s)	729
BalI	TGGCCA	1 cut(s)	483
BarI	GAAGNNNNNNTAC	2 cut(s)	704, 736
BbrPI	CACGTG	1 cut(s)	740
BbsI	GAAGAC	1 cut(s)	148
BbvI	GCAGC	3 cut(s)	40, 556, 769
BccI	CCATC	9 cut(s)	55, 95, 228, 473, 592, 616, 742, 1158, 1183
BceAI	ACGGC	2 cut(s)	504, 935
BciT130I	CCWGG	3 cut(s)	203, 511, 945
BcnI	CCSGG	1 cut(s)	232
BcoDI	GTCTC	2 cut(s)	27, 460
BfaI	CTAG	5 cut(s)	923, 1070, 1137, 1209, 1295
BfmI	CTRYAG	1 cut(s)	1269
BfrI	CTTAAG	2 cut(s)	847, 959
BglII	AGATCT	1 cut(s)	925
BisI	GCNGC	3 cut(s)	54, 570, 783
BlsI	GCNGC	3 cut(s)	55, 571, 784
Bme1390I	CCNGG	4 cut(s)	203, 232, 511, 945
BmeT110I	CYCGRG	4 cut(s)	30, 294, 789, 1192
BmgT120I	GGNCC	2 cut(s)	292, 748
BmiI	GGNNCC	1 cut(s)	369
BmrFI	CCNGG	4 cut(s)	203, 232, 511, 945
BmrI	ACTGGG	1 cut(s)	116
BmsI	GCATC	5 cut(s)	285, 667, 839, 1246, 1334
BmuI	ACTGGG	1 cut(s)	116
BpiI	GAAGAC	1 cut(s)	148
Bpu14I	TTCGAA	1 cut(s)	267
BpuEI	CTTGAG	4 cut(s)	308, 488, 549, 1111
BpuMI	CCSGG	1 cut(s)	232
Bsa29I	ATCGAT	1 cut(s)	93
BsaAI	YACGTR	3 cut(s)	613, 724, 740
BsaJI	CCNNGG	3 cut(s)	201, 510, 944
Bsc4I	CCNNNNNNNGG	2 cut(s)	230, 410
Bse1I	ACTGG	2 cut(s)	122, 760
BseBI	CCWGG	3 cut(s)	203, 511, 945
BseCI	ATCGAT	1 cut(s)	93
BseDI	CCNNGG	3 cut(s)	201, 510, 944
BseGI	GGATG	6 cut(s)	220, 276, 550, 598, 636, 1169
BseLI	CCNNNNNNNGG	2 cut(s)	230, 410
BseMII	CTCAG	1 cut(s)	384
BseNI	ACTGG	2 cut(s)	122, 760
BseSI	GKGCMC	1 cut(s)	729
BseXI	GCAGC	3 cut(s)	40, 556, 769
BshFI	GGCC	4 cut(s)	293, 483, 749, 1174
BshVI	ATCGAT	1 cut(s)	93
BsiHKCI	CYCGRG	4 cut(s)	30, 294, 789, 1192
BsiSI	CCGG	1 cut(s)	231
BslI	CCNNNNNNNGG	2 cut(s)	230, 410
BsmAI	GTCTC	2 cut(s)	27, 460
BsnI	GGCC	4 cut(s)	293, 483, 749, 1174
BsoBI	CYCGRG	4 cut(s)	30, 294, 789, 1192
Bsp119I	TTCGAA	1 cut(s)	267
Bsp1286I	GDGCHC	1 cut(s)	729
Bsp143I	GATC	5 cut(s)	94, 471, 925, 955, 1303
BspACI	CCGC	1 cut(s)	693
BspANI	GGCC	4 cut(s)	293, 483, 749, 1174
BspCNI	CTCAG	1 cut(s)	385
BspDI	ATCGAT	1 cut(s)	93
BspLI	GGNNCC	1 cut(s)	369
BspPI	GGATC	1 cut(s)	1298
BspQI	GCTCTTC	1 cut(s)	707
BspT104I	TTCGAA	1 cut(s)	267
BspTI	CTTAAG	2 cut(s)	847, 959
BsrI	ACTGG	2 cut(s)	122, 760
BssECI	CCNNGG	3 cut(s)	201, 510, 944
BssMI	GATC	5 cut(s)	94, 471, 925, 955, 1303
Bst2UI	CCWGG	3 cut(s)	203, 511, 945
Bst4CI	ACNGT	6 cut(s)	152, 196, 841, 1013, 1270, 1311
Bst6I	CTCTTC	3 cut(s)	67, 707, 1360
BstAFI	CTTAAG	2 cut(s)	847, 959
BstBAI	YACGTR	3 cut(s)	613, 724, 740
BstBI	TTCGAA	1 cut(s)	267
BstC8I	GCNNGC	2 cut(s)	274, 493
BstDEI	CTNAG	2 cut(s)	323, 393
BstF5I	GGATG	6 cut(s)	220, 276, 550, 598, 636, 1169
BstKTI	GATC	5 cut(s)	97, 474, 928, 958, 1306
BstMAI	GTCTC	2 cut(s)	27, 460
BstMBI	GATC	5 cut(s)	94, 471, 925, 955, 1303
BstMWI	GCNNNNNNNGC	2 cut(s)	692, 791
BstNI	CCWGG	3 cut(s)	203, 511, 945
BstNSI	RCATGY	1 cut(s)	1060
BstSCI	CCNGG	4 cut(s)	201, 230, 509, 943
BstSFI	CTRYAG	1 cut(s)	1269
BstSLI	GKGCMC	1 cut(s)	729
BstSNI	TACGTA	1 cut(s)	613
BstV1I	GCAGC	3 cut(s)	40, 556, 769
BstV2I	GAAGAC	1 cut(s)	148
BstX2I	RGATCY	2 cut(s)	925, 1303
BstYI	RGATCY	2 cut(s)	925, 1303
Bsu15I	ATCGAT	1 cut(s)	93
BsuRI	GGCC	4 cut(s)	293, 483, 749, 1174
BsuTUI	ATCGAT	1 cut(s)	93
BtgZI	GCGATG	1 cut(s)	1257
BtsCI	GGATG	6 cut(s)	220, 276, 550, 598, 636, 1169
BtsI	GCAGTG	1 cut(s)	958
BtsIMutI	CAGTG	5 cut(s)	192, 753, 846, 958, 1018
Cac8I	GCNNGC	2 cut(s)	274, 493
Cfr13I	GGNCC	2 cut(s)	292, 748
ClaI	ATCGAT	1 cut(s)	93
Csp6I	GTAC	3 cut(s)	217, 610, 807
CviAII	CATG	4 cut(s)	310, 865, 1057, 1078
CviQI	GTAC	3 cut(s)	217, 610, 807
DdeI	CTNAG	2 cut(s)	323, 393
DpnI	GATC	5 cut(s)	96, 473, 927, 957, 1305
DpnII	GATC	5 cut(s)	94, 471, 925, 955, 1303
EaeI	YGGCCR	1 cut(s)	481
Eam1104I	CTCTTC	3 cut(s)	67, 707, 1360
EarI	CTCTTC	3 cut(s)	67, 707, 1360
Eco105I	TACGTA	1 cut(s)	613
Eco57I	CTGAAG	1 cut(s)	1341
Eco72I	CACGTG	1 cut(s)	740
Eco88I	CYCGRG	4 cut(s)	30, 294, 789, 1192
EcoO109I	RGGNCCY	1 cut(s)	748
EcoRI	GAATTC	1 cut(s)	414
EcoRII	CCWGG	3 cut(s)	201, 509, 943
FaeI	CATG	4 cut(s)	313, 868, 1060, 1081
FatI	CATG	4 cut(s)	309, 864, 1056, 1077
Fnu4HI	GCNGC	3 cut(s)	54, 570, 783
FokI	GGATG	6 cut(s)	207, 263, 537, 605, 643, 1176
Fsp4HI	GCNGC	3 cut(s)	54, 570, 783
FspBI	CTAG	5 cut(s)	923, 1070, 1137, 1209, 1295
GluI	GCNGC	3 cut(s)	54, 570, 783
HaeIII	GGCC	4 cut(s)	293, 483, 749, 1174
HapII	CCGG	1 cut(s)	231
Hin1II	CATG	4 cut(s)	313, 868, 1060, 1081
HincII	GTYRAC	1 cut(s)	979
HindII	GTYRAC	1 cut(s)	979
HindIII	AAGCTT	1 cut(s)	80
HinfI	GANTC	3 cut(s)	434, 992, 1188
HpaI	GTTAAC	1 cut(s)	979
HpaII	CCGG	1 cut(s)	231
HphI	GGTGA	1 cut(s)	1276
Hpy166II	GTNNAC	4 cut(s)	102, 424, 844, 979
Hpy188I	TCNGA	2 cut(s)	333, 394
Hpy188III	TCNNGA	4 cut(s)	30, 438, 701, 766
Hpy8I	GTNNAC	4 cut(s)	102, 424, 844, 979
Hpy99I	CGWCG	1 cut(s)	877
HpyAV	CCTTC	3 cut(s)	701, 1027, 1079
HpyCH4III	ACNGT	6 cut(s)	152, 196, 841, 1013, 1270, 1311
HpyCH4IV	ACGT	5 cut(s)	113, 612, 723, 739, 875
HpyCH4V	TGCA	2 cut(s)	572, 1325
HpyF10VI	GCNNNNNNNGC	2 cut(s)	692, 791
HpyF3I	CTNAG	2 cut(s)	323, 393
HpySE526I	ACGT	5 cut(s)	113, 612, 723, 739, 875
Hsp92II	CATG	4 cut(s)	313, 868, 1060, 1081
KspAI	GTTAAC	1 cut(s)	979
Kzo9I	GATC	5 cut(s)	94, 471, 925, 955, 1303
LguI	GCTCTTC	1 cut(s)	707
LmnI	GCTCC	2 cut(s)	373, 948
Lsp1109I	GCAGC	3 cut(s)	40, 556, 769
LweI	GCATC	5 cut(s)	285, 667, 839, 1246, 1334
MaeI	CTAG	5 cut(s)	923, 1070, 1137, 1209, 1295
MaeII	ACGT	5 cut(s)	113, 612, 723, 739, 875
MaeIII	GTNAC	4 cut(s)	536, 655, 968, 1264
MalI	GATC	5 cut(s)	96, 473, 927, 957, 1305
MboI	GATC	5 cut(s)	94, 471, 925, 955, 1303
MboII	GAAGA	8 cut(s)	54, 124, 148, 155, 392, 724, 1094, 1347
MflI	RGATCY	2 cut(s)	925, 1303
MhlI	GDGCHC	1 cut(s)	729
MlsI	TGGCCA	1 cut(s)	483
MluCI	AATT	7 cut(s)	9, 301, 414, 1004, 1213, 1251, 1341
MluNI	TGGCCA	1 cut(s)	483
MlyI	GAGTC	1 cut(s)	428
MmeI	TCCRAC	2 cut(s)	858, 1165
Mox20I	TGGCCA	1 cut(s)	483
MscI	TGGCCA	1 cut(s)	483
MseI	TTAA	7 cut(s)	42, 176, 848, 960, 978, 1008, 1372
Msp20I	TGGCCA	1 cut(s)	483
MspA1I	CMGCKG	1 cut(s)	53
MspCI	CTTAAG	2 cut(s)	847, 959
MspI	CCGG	1 cut(s)	231
MspR9I	CCNGG	4 cut(s)	203, 232, 511, 945
MvaI	CCWGG	3 cut(s)	203, 511, 945
MwoI	GCNNNNNNNGC	2 cut(s)	692, 791
NciI	CCSGG	1 cut(s)	232
NdeII	GATC	5 cut(s)	94, 471, 925, 955, 1303
NlaIII	CATG	4 cut(s)	313, 868, 1060, 1081
NlaIV	GGNNCC	1 cut(s)	369
NmuCI	GTSAC	2 cut(s)	968, 1264
NspI	RCATGY	1 cut(s)	1060
NspV	TTCGAA	1 cut(s)	267
PciSI	GCTCTTC	1 cut(s)	707
PcsI	WCGNNNNNNNCGW	1 cut(s)	532
PfeI	GAWTC	2 cut(s)	992, 1188
PflFI	GACNNNGTC	1 cut(s)	152
PfoI	TCCNGGA	1 cut(s)	230
PkrI	GCNGC	3 cut(s)	55, 571, 784
PleI	GAGTC	1 cut(s)	428
PmaCI	CACGTG	1 cut(s)	740
PmlI	CACGTG	1 cut(s)	740
PpsI	GAGTC	1 cut(s)	428
Ppu21I	YACGTR	3 cut(s)	613, 724, 740
Psp6I	CCWGG	3 cut(s)	201, 509, 943
PspCI	CACGTG	1 cut(s)	740
PspGI	CCWGG	3 cut(s)	201, 509, 943
PspN4I	GGNNCC	1 cut(s)	369
PspPI	GGNCC	2 cut(s)	292, 748
PsuI	RGATCY	2 cut(s)	925, 1303
PsyI	GACNNNGTC	1 cut(s)	152
PvuII	CAGCTG	1 cut(s)	53
RsaI	GTAC	3 cut(s)	218, 611, 808
RsaNI	GTAC	3 cut(s)	217, 610, 807
SapI	GCTCTTC	1 cut(s)	707
SaqAI	TTAA	7 cut(s)	42, 176, 848, 960, 978, 1008, 1372
SatI	GCNGC	3 cut(s)	54, 570, 783
Sau3AI	GATC	5 cut(s)	94, 471, 925, 955, 1303
Sau96I	GGNCC	2 cut(s)	292, 748
SchI	GAGTC	1 cut(s)	428
ScrFI	CCNGG	4 cut(s)	203, 232, 511, 945
SduI	GDGCHC	1 cut(s)	729
SfaNI	GCATC	5 cut(s)	285, 667, 839, 1246, 1334
SfcI	CTRYAG	1 cut(s)	1269
SfuI	TTCGAA	1 cut(s)	267
SmlI	CTYRAG	6 cut(s)	287, 503, 564, 847, 959, 1126
SmoI	CTYRAG	6 cut(s)	287, 503, 564, 847, 959, 1126
SnaBI	TACGTA	1 cut(s)	613
Sse9I	AATT	7 cut(s)	9, 301, 414, 1004, 1213, 1251, 1341
SsiI	CCGC	1 cut(s)	693
SspI	AATATT	1 cut(s)	1224
SspMI	CTAG	5 cut(s)	923, 1070, 1137, 1209, 1295
StyD4I	CCNGG	4 cut(s)	201, 230, 509, 943
TaaI	ACNGT	6 cut(s)	152, 196, 841, 1013, 1270, 1311
TaiI	ACGT	5 cut(s)	116, 615, 726, 742, 878
TaqI	TCGA	5 cut(s)	93, 267, 339, 432, 587
TasI	AATT	7 cut(s)	9, 301, 414, 1004, 1213, 1251, 1341
TfiI	GAWTC	2 cut(s)	992, 1188
Tru1I	TTAA	7 cut(s)	42, 176, 848, 960, 978, 1008, 1372
Tru9I	TTAA	7 cut(s)	42, 176, 848, 960, 978, 1008, 1372
TscAI	CASTG	5 cut(s)	199, 760, 846, 958, 1018
TseFI	GTSAC	2 cut(s)	968, 1264
TseI	GCWGC	3 cut(s)	53, 569, 782
Tsp45I	GTSAC	2 cut(s)	968, 1264
TspDTI	ATGAA	7 cut(s)	720, 875, 881, 1005, 1066, 1110, 1290
TspGWI	ACGGA	2 cut(s)	814, 1263
TspRI	CASTG	5 cut(s)	199, 760, 846, 958, 1018
Tth111I	GACNNNGTC	1 cut(s)	152
Vha464I	CTTAAG	2 cut(s)	847, 959
XapI	RAATTY	5 cut(s)	301, 414, 1004, 1213, 1341
XceI	RCATGY	1 cut(s)	1060
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1157
XspI	CTAG	5 cut(s)	923, 1070, 1137, 1209, 1295

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.