Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0006417

Physical Location & Seq

Genomic Coordinates Reverse (-)

79571834 .. 79574479

Gene Structure 2646 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00141300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGGAGAAAATTGAGGTCAGTATTATTTCCAGAGACACCATTAAACCATCAGCTGCTTCCTCTTCACTACACCCTTACAAGCTTTCCATCATCGATCAGTTCACTCCCACAACGTATTTCCCAGTTATATTCTTCTACCCCATTACTGACCCTGTCTTCAATCTCCCTCAAACCTTAACCGACTTGAAAATCACTGTTTCCCAGACTCTCACTTTGTACTATCCACTCTCCGGAAGGATAAAAAACAACCTATACATTGATGATTTCGAAGCAGGCATCCCCTACCTTGAGGCCCGAGTGAACTGTCACATGATTGATTTTCTAAGGCTTCCGAAAATCGAGTGGCTAAATGAGTTTGTTCCAATAGCTCCATATCGCAAGGAAACAATATCTGAGCTTCTTCCCTTGCTTGGAATTCAAGTCAACATTTTCGACTCTGGAATAGCAATCGGTGTCTCGTTTTCTCACAAGATCAACGATGGCGAAACGGCAAACTGTTTTCTCAAGTCCTGGGTTGCTATTTTTCGTGGGTATCGTAACAAAATCATACATCCTAATCTCTCTCAAGCTGCATTACTTTTTCCATCGAGGGATGATTTGCCTGAAAAGTATGTAGCTATGATGGAAAGGTTGTGGTTCGTCGAGAAAAAAGTTGTTACAAGGAGATTTGTATTTGATGCGAAAGCCATATCCGCACTTCAAGATGAAGGGAAGAGCGAGTACGTGCCCAAACCATCACGTGTTCAGGCCCTCACTGGTTTTCTCTGGAAACATCAACTCGCTGCTTCTCGGGCATTATCATCAGGTACATCAACAAGATTTTCCGTAGCATCTCAGACAGTGAACTTAAGGTCAAAAATGAACATGAAAACGACGTTGGACAATGCCATTGGTAATATCTTTTTGTGGGCTTCGGCACAGCTAGATCTAAATGATACAGCACCAGGGAGCAGTGATCTTAAGTTGTGTGACTTGGTTAACTTACTCAATGAATCTATCAAAGAATTCAACAGTGATTACTTGGAGACTTTGAAGGGTAAAGAGGGATATGGAGGCATCTGTGATTTGCTAGATTTCGTGGAAGAGGGAGTCCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006807 GO:0008150 GO:0008152 GO:0009820 GO:0016740 GO:0016746 GO:0016747 GO:0050636 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110

Pfam Domains

Protein Families

Transferase

Protein Analysis

365

Amino Acids

41.17

Weight (kDa)

6.03

Isoelectric Point (pI)

35.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transferase	PF02458	5 - 335	6.1e-47	Transferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006417)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g40060 FvH4_7g18570 FvH4_7g18570 FvH4_7g18570 FvH4_7g18640
rosa_chinensis	RchiOBHm_Chr1g0362351 RchiOBHm_Chr2g0101451 RchiOBHm_Chr2g0101491
rosa_laevigata	RLG00000017082 RLG00000027650
rosa_multiflora	Rmu_co8521771.1_g000002 Rmu_sc0006153.1_g000027 Rmu_sc0006153.1_g000054
rosa_roxburghii	Rroxscaffold_2G00141300 Rroxscaffold_4G00294230
rosa_rugosa	Rorug01G0297800 Rorug02G0098200
rosa_samantha	Rh1AG306500 Rh1BG270000 Rh1CG287500 Rh1DG300200 Rh2AG147100 Rh2CG153000 Rh2CG153300 Rh2DG152500
rosa_wichuraiana	Rw1G027210 Rw2G011470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	230
AciI	CCGC	1 cut(s)	693
AcsI	RAATTY	2 cut(s)	414, 1004
AcvI	CACGTG	1 cut(s)	740
AfaI	GTAC	3 cut(s)	218, 722, 808
AfiI	CCNNNNNNNGG	2 cut(s)	230, 410
AflII	CTTAAG	2 cut(s)	847, 959
AflIII	ACRYGT	1 cut(s)	739
AgsI	TTSAA	6 cut(s)	160, 187, 419, 701, 1009, 1033
AjnI	CCWGG	2 cut(s)	509, 943
AjuI	GAANNNNNNNTTGG	2 cut(s)	860, 892
AluBI	AGCT	7 cut(s)	53, 82, 368, 397, 569, 617, 922
AluI	AGCT	7 cut(s)	53, 82, 368, 397, 569, 617, 922
Alw26I	GTCTC	3 cut(s)	27, 460, 1019
Ama87I	CYCGRG	2 cut(s)	294, 789
Aor13HI	TCCGGA	1 cut(s)	230
AoxI	GGCC	2 cut(s)	291, 747
ApeKI	GCWGC	3 cut(s)	53, 569, 782
ApoI	RAATTY	2 cut(s)	414, 1004
ArsI	GACNNNNNNTTYG	2 cut(s)	196, 228
AspS9I	GGNCC	2 cut(s)	292, 748
AsuII	TTCGAA	1 cut(s)	267
AvaI	CYCGRG	2 cut(s)	294, 789
BaeGI	GKGCMC	1 cut(s)	729
BarI	GAAGNNNNNNTAC	2 cut(s)	704, 736
BbrPI	CACGTG	1 cut(s)	740
BbsI	GAAGAC	1 cut(s)	148
BbvI	GCAGC	3 cut(s)	40, 556, 769
BccI	CCATC	6 cut(s)	55, 95, 473, 592, 616, 742
BceAI	ACGGC	1 cut(s)	504
BciT130I	CCWGG	2 cut(s)	511, 945
BcoDI	GTCTC	3 cut(s)	27, 460, 1019
BfaI	CTAG	2 cut(s)	923, 1070
BfmI	CTRYAG	1 cut(s)	1094
BfrI	CTTAAG	2 cut(s)	847, 959
BglII	AGATCT	1 cut(s)	925
BisI	GCNGC	3 cut(s)	54, 570, 783
BlsI	GCNGC	3 cut(s)	55, 571, 784
Bme1390I	CCNGG	2 cut(s)	511, 945
BmeT110I	CYCGRG	2 cut(s)	294, 789
BmgT120I	GGNCC	2 cut(s)	292, 748
BmrFI	CCNGG	2 cut(s)	511, 945
BmrI	ACTGGG	1 cut(s)	116
BmsI	GCATC	4 cut(s)	285, 667, 839, 1065
BmuI	ACTGGG	1 cut(s)	116
BpiI	GAAGAC	1 cut(s)	148
Bpu14I	TTCGAA	1 cut(s)	267
BpuEI	CTTGAG	3 cut(s)	308, 488, 549
Bsa29I	ATCGAT	1 cut(s)	93
BsaAI	YACGTR	2 cut(s)	724, 740
BsaJI	CCNNGG	2 cut(s)	510, 944
BsaWI	WCCGGW	1 cut(s)	230
Bsc4I	CCNNNNNNNGG	2 cut(s)	230, 410
Bse1I	ACTGG	2 cut(s)	122, 760
BseAI	TCCGGA	1 cut(s)	230
BseBI	CCWGG	2 cut(s)	511, 945
BseCI	ATCGAT	1 cut(s)	93
BseDI	CCNNGG	2 cut(s)	510, 944
BseGI	GGATG	3 cut(s)	276, 550, 598
BseLI	CCNNNNNNNGG	2 cut(s)	230, 410
BseMII	CTCAG	2 cut(s)	384, 848
BseNI	ACTGG	2 cut(s)	122, 760
BseSI	GKGCMC	1 cut(s)	729
BseXI	GCAGC	3 cut(s)	40, 556, 769
BshFI	GGCC	2 cut(s)	293, 749
BshVI	ATCGAT	1 cut(s)	93
BsiHKCI	CYCGRG	2 cut(s)	294, 789
BsiSI	CCGG	1 cut(s)	231
BslI	CCNNNNNNNGG	2 cut(s)	230, 410
BsmAI	GTCTC	3 cut(s)	27, 460, 1019
BsnI	GGCC	2 cut(s)	293, 749
BsoBI	CYCGRG	2 cut(s)	294, 789
Bsp119I	TTCGAA	1 cut(s)	267
Bsp1286I	GDGCHC	1 cut(s)	729
Bsp13I	TCCGGA	1 cut(s)	230
Bsp143I	GATC	4 cut(s)	94, 471, 925, 955
BspACI	CCGC	1 cut(s)	693
BspANI	GGCC	2 cut(s)	293, 749
BspCNI	CTCAG	2 cut(s)	385, 847
BspDI	ATCGAT	1 cut(s)	93
BspEI	TCCGGA	1 cut(s)	230
BspQI	GCTCTTC	1 cut(s)	707
BspT104I	TTCGAA	1 cut(s)	267
BspTI	CTTAAG	2 cut(s)	847, 959
BsrI	ACTGG	2 cut(s)	122, 760
BssECI	CCNNGG	2 cut(s)	510, 944
BssMI	GATC	4 cut(s)	94, 471, 925, 955
Bst2UI	CCWGG	2 cut(s)	511, 945
Bst4CI	ACNGT	5 cut(s)	196, 305, 497, 841, 1013
Bst6I	CTCTTC	3 cut(s)	67, 707, 1077
BstAFI	CTTAAG	2 cut(s)	847, 959
BstBAI	YACGTR	2 cut(s)	724, 740
BstBI	TTCGAA	1 cut(s)	267
BstC8I	GCNNGC	1 cut(s)	274
BstDEI	CTNAG	3 cut(s)	323, 393, 834
BstF5I	GGATG	3 cut(s)	276, 550, 598
BstKTI	GATC	4 cut(s)	97, 474, 928, 958
BstMAI	GTCTC	3 cut(s)	27, 460, 1019
BstMBI	GATC	4 cut(s)	94, 471, 925, 955
BstMWI	GCNNNNNNNGC	2 cut(s)	692, 791
BstNI	CCWGG	2 cut(s)	511, 945
BstSCI	CCNGG	2 cut(s)	509, 943
BstSFI	CTRYAG	1 cut(s)	1094
BstSLI	GKGCMC	1 cut(s)	729
BstV1I	GCAGC	3 cut(s)	40, 556, 769
BstV2I	GAAGAC	1 cut(s)	148
BstX2I	RGATCY	1 cut(s)	925
BstYI	RGATCY	1 cut(s)	925
Bsu15I	ATCGAT	1 cut(s)	93
BsuRI	GGCC	2 cut(s)	293, 749
BsuTUI	ATCGAT	1 cut(s)	93
BtsCI	GGATG	3 cut(s)	276, 550, 598
BtsI	GCAGTG	1 cut(s)	958
BtsIMutI	CAGTG	5 cut(s)	192, 753, 846, 958, 1018
Cac8I	GCNNGC	1 cut(s)	274
Cfr13I	GGNCC	2 cut(s)	292, 748
ClaI	ATCGAT	1 cut(s)	93
Csp6I	GTAC	3 cut(s)	217, 721, 807
CviAII	CATG	2 cut(s)	310, 865
CviQI	GTAC	3 cut(s)	217, 721, 807
DdeI	CTNAG	3 cut(s)	323, 393, 834
DpnI	GATC	4 cut(s)	96, 473, 927, 957
DpnII	GATC	4 cut(s)	94, 471, 925, 955
Eam1104I	CTCTTC	3 cut(s)	67, 707, 1077
EarI	CTCTTC	3 cut(s)	67, 707, 1077
Eco72I	CACGTG	1 cut(s)	740
Eco88I	CYCGRG	2 cut(s)	294, 789
EcoO109I	RGGNCCY	1 cut(s)	748
EcoRI	GAATTC	2 cut(s)	414, 1004
EcoRII	CCWGG	2 cut(s)	509, 943
FaeI	CATG	2 cut(s)	313, 868
FatI	CATG	2 cut(s)	309, 864
Fnu4HI	GCNGC	3 cut(s)	54, 570, 783
FokI	GGATG	3 cut(s)	263, 537, 605
Fsp4HI	GCNGC	3 cut(s)	54, 570, 783
FspBI	CTAG	2 cut(s)	923, 1070
GluI	GCNGC	3 cut(s)	54, 570, 783
HaeIII	GGCC	2 cut(s)	293, 749
HapII	CCGG	1 cut(s)	231
Hin1II	CATG	2 cut(s)	313, 868
HincII	GTYRAC	2 cut(s)	424, 979
HindII	GTYRAC	2 cut(s)	424, 979
HindIII	AAGCTT	1 cut(s)	80
HinfI	GANTC	4 cut(s)	205, 434, 992, 1089
HpaI	GTTAAC	1 cut(s)	979
HpaII	CCGG	1 cut(s)	231
Hpy166II	GTNNAC	5 cut(s)	102, 301, 424, 844, 979
Hpy188I	TCNGA	3 cut(s)	333, 394, 837
Hpy188III	TCNNGA	6 cut(s)	30, 231, 438, 643, 701, 766
Hpy8I	GTNNAC	5 cut(s)	102, 301, 424, 844, 979
Hpy99I	CGWCG	2 cut(s)	644, 877
HpyAV	CCTTC	3 cut(s)	228, 701, 1027
HpyCH4III	ACNGT	5 cut(s)	196, 305, 497, 841, 1013
HpyCH4IV	ACGT	4 cut(s)	113, 723, 739, 875
HpyCH4V	TGCA	1 cut(s)	572
HpyF10VI	GCNNNNNNNGC	2 cut(s)	692, 791
HpyF3I	CTNAG	3 cut(s)	323, 393, 834
HpySE526I	ACGT	4 cut(s)	113, 723, 739, 875
Hsp92II	CATG	2 cut(s)	313, 868
Kpn2I	TCCGGA	1 cut(s)	230
KspAI	GTTAAC	1 cut(s)	979
Kzo9I	GATC	4 cut(s)	94, 471, 925, 955
LguI	GCTCTTC	1 cut(s)	707
LmnI	GCTCC	2 cut(s)	373, 948
Lsp1109I	GCAGC	3 cut(s)	40, 556, 769
LweI	GCATC	4 cut(s)	285, 667, 839, 1065
MaeI	CTAG	2 cut(s)	923, 1070
MaeII	ACGT	4 cut(s)	113, 723, 739, 875
MaeIII	GTNAC	4 cut(s)	305, 536, 655, 968
MalI	GATC	4 cut(s)	96, 473, 927, 957
MboI	GATC	4 cut(s)	94, 471, 925, 955
MboII	GAAGA	6 cut(s)	54, 124, 148, 392, 724, 1094
MflI	RGATCY	1 cut(s)	925
MhlI	GDGCHC	1 cut(s)	729
MluCI	AATT	3 cut(s)	9, 414, 1004
MlyI	GAGTC	3 cut(s)	199, 428, 1098
MmeI	TCCRAC	1 cut(s)	858
MnlI	CCTC	9 cut(s)	7, 70, 177, 283, 582, 761, 1036, 1046, 1078
MroI	TCCGGA	1 cut(s)	230
MseI	TTAA	5 cut(s)	42, 176, 848, 960, 978
MspA1I	CMGCKG	1 cut(s)	53
MspCI	CTTAAG	2 cut(s)	847, 959
MspI	CCGG	1 cut(s)	231
MspR9I	CCNGG	2 cut(s)	511, 945
MvaI	CCWGG	2 cut(s)	511, 945
MwoI	GCNNNNNNNGC	2 cut(s)	692, 791
NdeII	GATC	4 cut(s)	94, 471, 925, 955
NlaIII	CATG	2 cut(s)	313, 868
NmuCI	GTSAC	2 cut(s)	305, 968
NspV	TTCGAA	1 cut(s)	267
PciSI	GCTCTTC	1 cut(s)	707
PcsI	WCGNNNNNNNCGW	1 cut(s)	532
PfeI	GAWTC	1 cut(s)	992
PflFI	GACNNNGTC	1 cut(s)	152
PkrI	GCNGC	3 cut(s)	55, 571, 784
PleI	GAGTC	3 cut(s)	199, 428, 1097
PmaCI	CACGTG	1 cut(s)	740
PmlI	CACGTG	1 cut(s)	740
PpsI	GAGTC	3 cut(s)	199, 428, 1097
Ppu21I	YACGTR	2 cut(s)	724, 740
Psp6I	CCWGG	2 cut(s)	509, 943
PspCI	CACGTG	1 cut(s)	740
PspGI	CCWGG	2 cut(s)	509, 943
PspPI	GGNCC	2 cut(s)	292, 748
PsuI	RGATCY	1 cut(s)	925
PsyI	GACNNNGTC	1 cut(s)	152
PvuII	CAGCTG	1 cut(s)	53
RsaI	GTAC	3 cut(s)	218, 722, 808
RsaNI	GTAC	3 cut(s)	217, 721, 807
SapI	GCTCTTC	1 cut(s)	707
SaqAI	TTAA	5 cut(s)	42, 176, 848, 960, 978
SatI	GCNGC	3 cut(s)	54, 570, 783
Sau3AI	GATC	4 cut(s)	94, 471, 925, 955
Sau96I	GGNCC	2 cut(s)	292, 748
SchI	GAGTC	3 cut(s)	199, 428, 1098
ScrFI	CCNGG	2 cut(s)	511, 945
SduI	GDGCHC	1 cut(s)	729
SfaNI	GCATC	4 cut(s)	285, 667, 839, 1065
SfcI	CTRYAG	1 cut(s)	1094
SfuI	TTCGAA	1 cut(s)	267
SmlI	CTYRAG	5 cut(s)	287, 503, 564, 847, 959
SmoI	CTYRAG	5 cut(s)	287, 503, 564, 847, 959
Sse9I	AATT	3 cut(s)	9, 414, 1004
SsiI	CCGC	1 cut(s)	693
SspMI	CTAG	2 cut(s)	923, 1070
StyD4I	CCNGG	2 cut(s)	509, 943
TaaI	ACNGT	5 cut(s)	196, 305, 497, 841, 1013
TaiI	ACGT	4 cut(s)	116, 726, 742, 878
TaqI	TCGA	6 cut(s)	93, 267, 339, 432, 587, 642
TasI	AATT	3 cut(s)	9, 414, 1004
TatI	WGTACW	1 cut(s)	216
TfiI	GAWTC	1 cut(s)	992
Tru1I	TTAA	5 cut(s)	42, 176, 848, 960, 978
Tru9I	TTAA	5 cut(s)	42, 176, 848, 960, 978
TscAI	CASTG	5 cut(s)	199, 760, 846, 958, 1018
TseFI	GTSAC	2 cut(s)	305, 968
TseI	GCWGC	3 cut(s)	53, 569, 782
Tsp45I	GTSAC	2 cut(s)	305, 968
TspDTI	ATGAA	4 cut(s)	720, 875, 881, 1005
TspGWI	ACGGA	1 cut(s)	814
TspRI	CASTG	5 cut(s)	199, 760, 846, 958, 1018
Tth111I	GACNNNGTC	1 cut(s)	152
Vha464I	CTTAAG	2 cut(s)	847, 959
XapI	RAATTY	2 cut(s)	414, 1004
XspI	CTAG	2 cut(s)	923, 1070

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.