Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0006417

Physical Location & Seq

Genomic Coordinates Forward (+)

8168997 .. 8170494

Gene Structure 1498 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0098200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGGGAAGAGAGGCTCCACAGCAAACGCCGCCGTCGCCGCAGCAGCAGCAGCAGCAAGTGTCGTTCACGGTGGAGCAATTGGTCGCCGTCAATCCCTACAACCCCGATATCCTCCCCGATCTCGAAAGCTACGTCAACGAGCAGGTTTCGTCACAGACCTACAGTCTCGATGCGAATCTCTGCCTTCTTCGTCTCTATCAGTTTGAGCCGGAGCGTATGAGCACTCAAATTGTTGCTCGTATTTTGGTTAAGGCACTGATGGCAATGCCCGCTCCCGATTTCAGCCTCTGTCTCTTCCTAATTCCAGAAAGAGTGCAAATGGAGGAGCAGTTCAAGACACTAATTGTCCTATCTCACTATCTAGAGACAGGAAGATTCAGTCAATTCTGGGATGAAGCATCTAAGAATCGTCACATACTTGAAGCTGTCCCAGGTTTTGAGCAAGCGGTCCAAGCCTATGCAGTTCATGTTCTTTCCTTGACTTACCAAAAGGTTCCCAGATCTGTGCTTGCTGAGGCAATCAACCTTGAAGGTATATCCTTGGACAAATTCCTTGAGCATCATGTTGCCAATAGCGGTTGGGTTCTTGAAAAAGGTCATGGTAAGGGCCAACTCATTGTCTTACCTCGAAATGAATTTAACCATCCCGAGCTGAAGAAAAGCACAGACGGTGGAATTCCATTAGACCATGTGGCTCGAATCTTCCCCATCCTGGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006807 GO:0008150 GO:0008152 GO:0009820 GO:0016740 GO:0016746 GO:0016747 GO:0050636 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110

Pfam Domains

Protein Families

Transferase

Protein Analysis

239

Amino Acids

27.03

Weight (kDa)

5.48

Isoelectric Point (pI)

45.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CSN8_PSD8_EIF3K	PF10075	74 - 199	1.3e-16	CSN8/PSMD8/EIF3K family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006417)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g40060 FvH4_7g18570 FvH4_7g18570 FvH4_7g18570 FvH4_7g18640
rosa_chinensis	RchiOBHm_Chr1g0362351 RchiOBHm_Chr2g0101451 RchiOBHm_Chr2g0101491
rosa_laevigata	RLG00000017082 RLG00000027650
rosa_multiflora	Rmu_co8521771.1_g000002 Rmu_sc0006153.1_g000027 Rmu_sc0006153.1_g000054
rosa_roxburghii	Rroxscaffold_2G00141300 Rroxscaffold_4G00294230
rosa_rugosa	Rorug01G0297800 Rorug02G0098200
rosa_samantha	Rh1AG306500 Rh1BG270000 Rh1CG287500 Rh1DG300200 Rh2AG147100 Rh2CG153000 Rh2CG153300 Rh2DG152500
rosa_wichuraiana	Rw1G027210 Rw2G011470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	133
AccBSI	CCGCTC	1 cut(s)	272
AciI	CCGC	5 cut(s)	29, 38, 270, 446, 576
AcsI	RAATTY	3 cut(s)	548, 635, 675
AcuI	CTGAAG	1 cut(s)	674
AfiI	CCNNNNNNNGG	2 cut(s)	712, 713
AgsI	TTSAA	4 cut(s)	334, 422, 530, 590
AhdI	GACNNNNNGTC	1 cut(s)	162
AjnI	CCWGG	2 cut(s)	430, 711
AloI	GAACNNNNNNTCC	2 cut(s)	314, 346
AluBI	AGCT	3 cut(s)	129, 425, 652
AluI	AGCT	3 cut(s)	129, 425, 652
Alw21I	GWGCWC	1 cut(s)	224
Alw26I	GTCTC	4 cut(s)	170, 197, 296, 359
AlwNI	CAGNNNCTG	1 cut(s)	288
Ama87I	CYCGRG	1 cut(s)	647
AoxI	GGCC	1 cut(s)	607
ApeKI	GCWGC	5 cut(s)	40, 43, 46, 49, 52
ApoI	RAATTY	3 cut(s)	548, 635, 675
ArsI	GACNNNNNNTTYG	2 cut(s)	117, 149
AspS9I	GGNCC	2 cut(s)	448, 607
AvaI	CYCGRG	1 cut(s)	647
AvaII	GGWCC	1 cut(s)	448
Bbv12I	GWGCWC	1 cut(s)	224
BbvCI	CCTCAGC	1 cut(s)	513
BbvI	GCAGC	5 cut(s)	52, 55, 58, 61, 64
BccI	CCATC	3 cut(s)	253, 651, 716
BceAI	ACGGC	2 cut(s)	16, 71
BciT130I	CCWGG	2 cut(s)	432, 713
BcoDI	GTCTC	4 cut(s)	170, 197, 296, 359
BfaI	CTAG	1 cut(s)	362
BfmI	CTRYAG	1 cut(s)	160
BfuAI	ACCTGC	1 cut(s)	133
BglII	AGATCT	1 cut(s)	500
BisI	GCNGC	7 cut(s)	29, 38, 41, 44, 47, 50, 53
BlsI	GCNGC	7 cut(s)	30, 39, 42, 45, 48, 51, 54
Bme1390I	CCNGG	2 cut(s)	432, 713
Bme18I	GGWCC	1 cut(s)	448
BmeRI	GACNNNNNGTC	1 cut(s)	162
BmeT110I	CYCGRG	1 cut(s)	647
BmgT120I	GGNCC	2 cut(s)	448, 607
BmiI	GGNNCC	2 cut(s)	15, 495
BmrFI	CCNGG	2 cut(s)	432, 713
BmsI	GCATC	3 cut(s)	160, 407, 568
Bpu10I	CCTNAGC	1 cut(s)	513
BpuEI	CTTGAG	1 cut(s)	575
BsaBI	GATNNNNATC	1 cut(s)	174
BsaJI	CCNNGG	3 cut(s)	430, 540, 712
BsaXI	ACNNNNNCTCC	2 cut(s)	314, 344
Bsc4I	CCNNNNNNNGG	2 cut(s)	712, 713
Bse3DI	GCAATG	1 cut(s)	270
Bse8I	GATNNNNATC	1 cut(s)	174
BseBI	CCWGG	2 cut(s)	432, 713
BseDI	CCNNGG	3 cut(s)	430, 540, 712
BseGI	GGATG	3 cut(s)	397, 643, 708
BseJI	GATNNNNATC	1 cut(s)	174
BseLI	CCNNNNNNNGG	2 cut(s)	712, 713
BseMI	GCAATG	1 cut(s)	270
BseMII	CTCAG	1 cut(s)	504
BseRI	GAGGAG	1 cut(s)	338
BseXI	GCAGC	5 cut(s)	52, 55, 58, 61, 64
BshFI	GGCC	1 cut(s)	609
BsiHKAI	GWGCWC	1 cut(s)	224
BsiHKCI	CYCGRG	1 cut(s)	647
BsiSI	CCGG	1 cut(s)	209
BslFI	GGGAC	1 cut(s)	413
BslI	CCNNNNNNNGG	2 cut(s)	712, 713
BsmAI	GTCTC	4 cut(s)	170, 197, 296, 359
BsmBI	CGTCTC	1 cut(s)	197
BsmFI	GGGAC	1 cut(s)	413
BsnI	GGCC	1 cut(s)	609
BsoBI	CYCGRG	1 cut(s)	647
Bsp1286I	GDGCHC	1 cut(s)	224
Bsp143I	GATC	2 cut(s)	118, 500
BspACI	CCGC	5 cut(s)	29, 38, 270, 446, 576
BspANI	GGCC	1 cut(s)	609
BspCNI	CTCAG	1 cut(s)	505
BspLI	GGNNCC	2 cut(s)	15, 495
BspMI	ACCTGC	1 cut(s)	133
BsrBI	CCGCTC	1 cut(s)	272
BsrDI	GCAATG	1 cut(s)	270
BssECI	CCNNGG	3 cut(s)	430, 540, 712
BssMI	GATC	2 cut(s)	118, 500
BssT1I	CCWWGG	1 cut(s)	540
Bst2UI	CCWGG	2 cut(s)	432, 713
Bst4CI	ACNGT	3 cut(s)	70, 164, 671
Bst6I	CTCTTC	1 cut(s)	299
BstC8I	GCNNGC	3 cut(s)	270, 444, 510
BstDEI	CTNAG	2 cut(s)	402, 513
BstF5I	GGATG	3 cut(s)	397, 643, 708
BstKTI	GATC	2 cut(s)	121, 503
BstMAI	GTCTC	4 cut(s)	170, 197, 296, 359
BstMBI	GATC	2 cut(s)	118, 500
BstNI	CCWGG	2 cut(s)	432, 713
BstSCI	CCNGG	2 cut(s)	430, 711
BstSFI	CTRYAG	1 cut(s)	160
BstV1I	GCAGC	5 cut(s)	52, 55, 58, 61, 64
BstX2I	RGATCY	1 cut(s)	500
BstYI	RGATCY	1 cut(s)	500
BsuRI	GGCC	1 cut(s)	609
BtsCI	GGATG	3 cut(s)	397, 643, 708
BtsIMutI	CAGTG	1 cut(s)	254
BveI	ACCTGC	1 cut(s)	133
Cac8I	GCNNGC	3 cut(s)	270, 444, 510
CaiI	CAGNNNCTG	1 cut(s)	288
Cfr13I	GGNCC	2 cut(s)	448, 607
CviAII	CATG	4 cut(s)	467, 563, 599, 689
CviJI	RGCY	9 cut(s)	14, 129, 208, 285, 425, 455, 609, 652, 695
CviKI_1	RGCY	9 cut(s)	14, 129, 208, 285, 425, 455, 609, 652, 695
DdeI	CTNAG	2 cut(s)	402, 513
DpnI	GATC	2 cut(s)	120, 502
DpnII	GATC	2 cut(s)	118, 500
DriI	GACNNNNNGTC	1 cut(s)	162
Eam1104I	CTCTTC	1 cut(s)	299
Eam1105I	GACNNNNNGTC	1 cut(s)	162
EarI	CTCTTC	1 cut(s)	299
Eco130I	CCWWGG	1 cut(s)	540
Eco32I	GATATC	1 cut(s)	109
Eco47I	GGWCC	1 cut(s)	448
Eco57I	CTGAAG	1 cut(s)	674
Eco88I	CYCGRG	1 cut(s)	647
EcoRI	GAATTC	1 cut(s)	675
EcoRII	CCWGG	2 cut(s)	430, 711
EcoRV	GATATC	1 cut(s)	109
EcoT14I	CCWWGG	1 cut(s)	540
ErhI	CCWWGG	1 cut(s)	540
Esp3I	CGTCTC	1 cut(s)	197
FaeI	CATG	4 cut(s)	470, 566, 602, 692
FaiI	YATR	8 cut(s)	218, 416, 459, 468, 536, 564, 600, 690
FaqI	GGGAC	1 cut(s)	413
FatI	CATG	4 cut(s)	466, 562, 598, 688
FauI	CCCGC	1 cut(s)	277
Fnu4HI	GCNGC	7 cut(s)	29, 38, 41, 44, 47, 50, 53
FokI	GGATG	3 cut(s)	404, 630, 695
Fsp4HI	GCNGC	7 cut(s)	29, 38, 41, 44, 47, 50, 53
FspBI	CTAG	1 cut(s)	362
GluI	GCNGC	7 cut(s)	29, 38, 41, 44, 47, 50, 53
HaeIII	GGCC	1 cut(s)	609
HapII	CCGG	1 cut(s)	209
Hin1II	CATG	4 cut(s)	470, 566, 602, 692
HincII	GTYRAC	1 cut(s)	136
HindII	GTYRAC	1 cut(s)	136
HinfI	GANTC	4 cut(s)	175, 375, 406, 699
HpaII	CCGG	1 cut(s)	209
Hpy166II	GTNNAC	2 cut(s)	66, 136
Hpy188III	TCNNGA	8 cut(s)	122, 167, 275, 305, 334, 362, 587, 647
Hpy8I	GTNNAC	2 cut(s)	66, 136
Hpy99I	CGWCG	1 cut(s)	37
HpyAV	CCTTC	2 cut(s)	194, 524
HpyCH4III	ACNGT	3 cut(s)	70, 164, 671
HpyCH4IV	ACGT	1 cut(s)	132
HpyCH4V	TGCA	2 cut(s)	316, 461
HpyF3I	CTNAG	2 cut(s)	402, 513
HpySE526I	ACGT	1 cut(s)	132
Hsp92II	CATG	4 cut(s)	470, 566, 602, 692
Kzo9I	GATC	2 cut(s)	118, 500
LmnI	GCTCC	5 cut(s)	19, 73, 211, 277, 325
LpnPI	CCDG	9 cut(s)	128, 222, 318, 354, 373, 417, 444, 511, 698
Lsp1109I	GCAGC	5 cut(s)	52, 55, 58, 61, 64
LweI	GCATC	3 cut(s)	160, 407, 568
MaeI	CTAG	1 cut(s)	362
MaeII	ACGT	1 cut(s)	132
MaeIII	GTNAC	2 cut(s)	150, 410
MalI	GATC	2 cut(s)	120, 502
MbiI	CCGCTC	1 cut(s)	272
MboI	GATC	2 cut(s)	118, 500
MboII	GAAGA	6 cut(s)	18, 179, 286, 384, 667, 694
MfeI	CAATTG	1 cut(s)	77
MflI	RGATCY	1 cut(s)	500
MhlI	GDGCHC	1 cut(s)	224
MluCI	AATT	8 cut(s)	77, 228, 300, 342, 383, 548, 635, 675
MnlI	CCTC	6 cut(s)	4, 122, 296, 316, 508, 636
MseI	TTAA	2 cut(s)	249, 639
MspI	CCGG	1 cut(s)	209
MspR9I	CCNGG	2 cut(s)	432, 713
MunI	CAATTG	1 cut(s)	77
MvaI	CCWGG	2 cut(s)	432, 713
NdeII	GATC	2 cut(s)	118, 500
NlaIII	CATG	4 cut(s)	470, 566, 602, 692
NlaIV	GGNNCC	2 cut(s)	15, 495
NmuCI	GTSAC	2 cut(s)	150, 410
PcsI	WCGNNNNNNNCGW	1 cut(s)	129
PfeI	GAWTC	4 cut(s)	175, 375, 406, 699
PkrI	GCNGC	7 cut(s)	30, 39, 42, 45, 48, 51, 54
Psp6I	CCWGG	2 cut(s)	430, 711
PspGI	CCWGG	2 cut(s)	430, 711
PspN4I	GGNNCC	2 cut(s)	15, 495
PspPI	GGNCC	2 cut(s)	448, 607
PstNI	CAGNNNCTG	1 cut(s)	288
PsuI	RGATCY	1 cut(s)	500
SaqAI	TTAA	2 cut(s)	249, 639
SatI	GCNGC	7 cut(s)	29, 38, 41, 44, 47, 50, 53
Sau3AI	GATC	2 cut(s)	118, 500
Sau96I	GGNCC	2 cut(s)	448, 607
ScrFI	CCNGG	2 cut(s)	432, 713
SduI	GDGCHC	1 cut(s)	224
SfaNI	GCATC	3 cut(s)	160, 407, 568
SfcI	CTRYAG	1 cut(s)	160
SinI	GGWCC	1 cut(s)	448
SmlI	CTYRAG	1 cut(s)	554
SmoI	CTYRAG	1 cut(s)	554
Sse9I	AATT	8 cut(s)	77, 228, 300, 342, 383, 548, 635, 675
SsiI	CCGC	5 cut(s)	29, 38, 270, 446, 576
SspMI	CTAG	1 cut(s)	362
StyD4I	CCNGG	2 cut(s)	430, 711
StyI	CCWWGG	1 cut(s)	540
TaaI	ACNGT	3 cut(s)	70, 164, 671
TaiI	ACGT	1 cut(s)	135
TaqI	TCGA	4 cut(s)	123, 168, 628, 697
TasI	AATT	8 cut(s)	77, 228, 300, 342, 383, 548, 635, 675
TauI	GCSGC	2 cut(s)	31, 40
TfiI	GAWTC	4 cut(s)	175, 375, 406, 699
Tru1I	TTAA	2 cut(s)	249, 639
Tru9I	TTAA	2 cut(s)	249, 639
TscAI	CASTG	1 cut(s)	261
TseFI	GTSAC	2 cut(s)	150, 410
TseI	GCWGC	5 cut(s)	40, 43, 46, 49, 52
Tsp45I	GTSAC	2 cut(s)	150, 410
TspDTI	ATGAA	3 cut(s)	408, 455, 648
TspRI	CASTG	1 cut(s)	261
VpaK11BI	GGWCC	1 cut(s)	448
XapI	RAATTY	3 cut(s)	548, 635, 675
XbaI	TCTAGA	1 cut(s)	361
XspI	CTAG	1 cut(s)	362

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.