Rmu_sc0006445.1_g000013

Cell division protein FtsY homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006445.1
OG0009942
Physical Location & Seq
Forward (+)
60037 .. 63961
3925 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 528 bp
atggcttcgcctttgccttcttccttctctcacttctcactcctctccaaacccgcaccgccccaaaaccaccaccgccgcctcctcctagccccgacccgacccgcgtcttccgggttccaatgccgggccggaaccgggttcttcaaccgcctcggacgcctcataaaggagaaggccaagagcgacgtggacaagctcttctccgggttctccaagacccgcgacaatctcgccgtcatcgacgagctcctcctctactggaacctcgccgacaccgatcgagtcctcgacgagcttgaagaggctctgctggtatcggattttgggcccaagatcaccattaagattgtggagagtttgagggaggatatagtagctgggaagctcaagtctggaagtgaaataaaggaggcgttgaagaagaatgtgctggatttgttgactatagacgagaaaactgagcttcaacttggatacaggtccaatttgttagtcttccgacaattgagtcatttaacttgttga

Protein Analysis

175

Amino Acids

19.59

Weight (kDa)

8.89

Isoelectric Point (pI)

29.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRP54_N PF02881 92 - 142 2.8e-10 SRP54-type protein, helical bundle domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 510
AccII CGCG 2 cut(s) 107, 225
AciI CCGC 7 cut(s) 54, 59, 76, 79, 105, 151, 223
AcyI GRCGYC 1 cut(s) 160
AfiI CCNNNNNNNGG 3 cut(s) 127, 138, 169
AgsI TTSAA 4 cut(s) 148, 302, 421, 470
AjiI CACGTC 1 cut(s) 190
AluBI AGCT 6 cut(s) 199, 250, 298, 380, 388, 466
AluI AGCT 6 cut(s) 199, 250, 298, 380, 388, 466
Alw21I GWGCWC 1 cut(s) 252
AoxI GGCC 3 cut(s) 129, 177, 329
ApaI GGGCCC 1 cut(s) 333
AspS9I GGNCC 4 cut(s) 129, 329, 330, 483
AsuC2I CCSGG 4 cut(s) 115, 128, 139, 208
AsuHPI GGTGA 1 cut(s) 331
AvaII GGWCC 1 cut(s) 483
BaeGI GKGCMC 1 cut(s) 333
BanII GRGCYC 2 cut(s) 252, 333
BbsI GAAGAC 2 cut(s) 102, 490
Bbv12I GWGCWC 1 cut(s) 252
BceAI ACGGC 1 cut(s) 221
BciVI GTATCC 1 cut(s) 470
BcnI CCSGG 4 cut(s) 115, 128, 139, 208
BfaI CTAG 1 cut(s) 89
BfmI CTRYAG 1 cut(s) 447
BfuI GTATCC 1 cut(s) 470
BisI GCNGC 1 cut(s) 79
BlsI GCNGC 1 cut(s) 80
Bme1390I CCNGG 4 cut(s) 115, 128, 139, 208
Bme18I GGWCC 1 cut(s) 483
BmgBI CACGTC 1 cut(s) 190
BmgT120I GGNCC 4 cut(s) 129, 329, 330, 483
BmiI GGNNCC 4 cut(s) 119, 136, 266, 331
BmrFI CCNGG 4 cut(s) 115, 128, 139, 208
BoxI GACNNNNGTC 1 cut(s) 106
BpiI GAAGAC 2 cut(s) 102, 490
BpuEI CTTGAG 1 cut(s) 374
BpuMI CCSGG 4 cut(s) 115, 128, 139, 208
BsaHI GRCGYC 1 cut(s) 160
BsaJI CCNNGG 1 cut(s) 154
Bsc4I CCNNNNNNNGG 3 cut(s) 127, 138, 169
Bse1I ACTGG 1 cut(s) 266
BseDI CCNNGG 1 cut(s) 154
BseLI CCNNNNNNNGG 3 cut(s) 127, 138, 169
BseMII CTCAG 1 cut(s) 453
BseNI ACTGG 1 cut(s) 266
BseRI GAGGAG 4 cut(s) 32, 74, 242, 245
BseSI GKGCMC 1 cut(s) 333
BseYI CCCAGC 1 cut(s) 380
Bsh1236I CGCG 2 cut(s) 107, 225
Bsh1285I CGRYCG 1 cut(s) 283
BshFI GGCC 3 cut(s) 131, 179, 331
BsiEI CGRYCG 1 cut(s) 283
BsiHKAI GWGCWC 1 cut(s) 252
BsiSI CCGG 5 cut(s) 114, 127, 132, 138, 207
BslI CCNNNNNNNGG 3 cut(s) 127, 138, 169
BsnI GGCC 3 cut(s) 131, 179, 331
Bsp120I GGGCCC 1 cut(s) 329
Bsp1286I GDGCHC 2 cut(s) 252, 333
Bsp143I GATC 2 cut(s) 280, 336
BspACI CCGC 7 cut(s) 54, 59, 76, 79, 105, 151, 223
BspANI GGCC 3 cut(s) 131, 179, 331
BspCNI CTCAG 1 cut(s) 454
BspFNI CGCG 2 cut(s) 107, 225
BspLI GGNNCC 4 cut(s) 119, 136, 266, 331
BspQI GCTCTTC 1 cut(s) 206
BsrI ACTGG 1 cut(s) 266
BssECI CCNNGG 1 cut(s) 154
BssMI GATC 2 cut(s) 280, 336
BssNI GRCGYC 1 cut(s) 160
Bst6I CTCTTC 2 cut(s) 206, 297
BstACI GRCGYC 1 cut(s) 160
BstDEI CTNAG 1 cut(s) 462
BstENI CCTNNNNNAGG 1 cut(s) 167
BstFNI CGCG 2 cut(s) 107, 225
BstKTI GATC 2 cut(s) 283, 339
BstMBI GATC 2 cut(s) 280, 336
BstMCI CGRYCG 1 cut(s) 283
BstMWI GCNNNNNNNGC 1 cut(s) 159
BstPAI GACNNNNGTC 1 cut(s) 106
BstSCI CCNGG 4 cut(s) 113, 126, 137, 206
BstSFI CTRYAG 1 cut(s) 447
BstSLI GKGCMC 1 cut(s) 333
BstUI CGCG 2 cut(s) 107, 225
BstV2I GAAGAC 2 cut(s) 102, 490
BsuI GTATCC 1 cut(s) 470
BsuRI GGCC 3 cut(s) 131, 179, 331
BtrI CACGTC 1 cut(s) 190
Cfr13I GGNCC 4 cut(s) 129, 329, 330, 483
CseI GACGC 2 cut(s) 96, 168
DdeI CTNAG 1 cut(s) 462
DpnI GATC 2 cut(s) 282, 338
DpnII GATC 2 cut(s) 280, 336
DrdI GACNNNNNNGTC 1 cut(s) 510
DseDI GACNNNNNNGTC 1 cut(s) 510
Eam1104I CTCTTC 2 cut(s) 206, 297
EarI CTCTTC 2 cut(s) 206, 297
Ecl136II GAGCTC 1 cut(s) 250
Eco24I GRGCYC 2 cut(s) 252, 333
Eco47I GGWCC 1 cut(s) 483
Eco53kI GAGCTC 1 cut(s) 250
EcoICRI GAGCTC 1 cut(s) 250
EcoNI CCTNNNNNAGG 1 cut(s) 167
EcoT38I GRGCYC 2 cut(s) 252, 333
FaiI YATR 3 cut(s) 167, 374, 449
FauI CCCGC 3 cut(s) 61, 112, 230
Fnu4HI GCNGC 1 cut(s) 79
FriOI GRGCYC 2 cut(s) 252, 333
Fsp4HI GCNGC 1 cut(s) 79
FspBI CTAG 1 cut(s) 89
GluI GCNGC 1 cut(s) 79
GsaI CCCAGC 1 cut(s) 384
HaeIII GGCC 3 cut(s) 131, 179, 331
HapII CCGG 5 cut(s) 114, 127, 132, 138, 207
HgaI GACGC 2 cut(s) 96, 168
Hin1I GRCGYC 1 cut(s) 160
HincII GTYRAC 1 cut(s) 444
HindII GTYRAC 1 cut(s) 444
HinfI GANTC 2 cut(s) 285, 511
HpaII CCGG 5 cut(s) 114, 127, 132, 138, 207
HphI GGTGA 1 cut(s) 331
Hpy166II GTNNAC 2 cut(s) 193, 444
Hpy188I TCNGA 3 cut(s) 158, 322, 503
Hpy188III TCNNGA 1 cut(s) 396
Hpy8I GTNNAC 2 cut(s) 193, 444
Hpy99I CGWCG 3 cut(s) 191, 248, 296
HpyAV CCTTC 3 cut(s) 27, 34, 169
HpyCH4IV ACGT 1 cut(s) 189
HpyF10VI GCNNNNNNNGC 1 cut(s) 159
HpyF3I CTNAG 1 cut(s) 462
HpySE526I ACGT 1 cut(s) 189
Hsp92I GRCGYC 1 cut(s) 160
Kzo9I GATC 2 cut(s) 280, 336
LguI GCTCTTC 1 cut(s) 206
LmnI GCTCC 1 cut(s) 255
MaeI CTAG 1 cut(s) 89
MaeII ACGT 1 cut(s) 189
MalI GATC 2 cut(s) 282, 338
MboI GATC 2 cut(s) 280, 336
MboII GAAGA 8 cut(s) 12, 102, 136, 193, 314, 433, 436, 490
MfeI CAATTG 1 cut(s) 506
MhlI GDGCHC 2 cut(s) 252, 333
MluCI AATT 2 cut(s) 487, 506
MlyI GAGTC 2 cut(s) 294, 520
MmeI TCCRAC 1 cut(s) 526
MseI TTAA 2 cut(s) 345, 518
MspI CCGG 5 cut(s) 114, 127, 132, 138, 207
MspR9I CCNGG 4 cut(s) 115, 128, 139, 208
MunI CAATTG 1 cut(s) 506
MvnI CGCG 2 cut(s) 107, 225
MwoI GCNNNNNNNGC 1 cut(s) 159
NciI CCSGG 4 cut(s) 115, 128, 139, 208
NdeII GATC 2 cut(s) 280, 336
NlaIV GGNNCC 4 cut(s) 119, 136, 266, 331
PciSI GCTCTTC 1 cut(s) 206
PcsI WCGNNNNNNNCGW 2 cut(s) 240, 276
PkrI GCNGC 1 cut(s) 80
Ple19I CGATCG 1 cut(s) 283
PleI GAGTC 2 cut(s) 293, 519
PpsI GAGTC 2 cut(s) 293, 519
PshAI GACNNNNGTC 1 cut(s) 106
Psp124BI GAGCTC 1 cut(s) 252
PspFI CCCAGC 1 cut(s) 380
PspN4I GGNNCC 4 cut(s) 119, 136, 266, 331
PspOMI GGGCCC 1 cut(s) 329
PspPI GGNCC 4 cut(s) 129, 329, 330, 483
PvuI CGATCG 1 cut(s) 283
SacI GAGCTC 1 cut(s) 252
SapI GCTCTTC 1 cut(s) 206
SaqAI TTAA 2 cut(s) 345, 518
SatI GCNGC 1 cut(s) 79
Sau3AI GATC 2 cut(s) 280, 336
Sau96I GGNCC 4 cut(s) 129, 329, 330, 483
SchI GAGTC 2 cut(s) 294, 520
ScrFI CCNGG 4 cut(s) 115, 128, 139, 208
SduI GDGCHC 2 cut(s) 252, 333
SetI ASST 9 cut(s) 192, 201, 252, 270, 300, 382, 390, 468, 485
SfcI CTRYAG 1 cut(s) 447
SinI GGWCC 1 cut(s) 483
SmlI CTYRAG 1 cut(s) 389
SmoI CTYRAG 1 cut(s) 389
Sse9I AATT 2 cut(s) 487, 506
SsiI CCGC 7 cut(s) 54, 59, 76, 79, 105, 151, 223
SspMI CTAG 1 cut(s) 89
SstI GAGCTC 1 cut(s) 252
StyD4I CCNGG 4 cut(s) 113, 126, 137, 206
TaiI ACGT 1 cut(s) 192
TaqI TCGA 3 cut(s) 243, 283, 291
TasI AATT 2 cut(s) 487, 506
TauI GCSGC 1 cut(s) 81
Tru1I TTAA 2 cut(s) 345, 518
Tru9I TTAA 2 cut(s) 345, 518
VpaK11BI GGWCC 1 cut(s) 483
XagI CCTNNNNNAGG 1 cut(s) 167
XcmI CCANNNNNNNNNTGG 2 cut(s) 187, 349
XspI CTAG 1 cut(s) 89
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.