Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006475.1

Orthogroup ID

OG0004067

Physical Location & Seq

Genomic Coordinates Reverse (-)

5014 .. 5673

Gene Structure 660 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

atgcaaaagccaccagctgctggctctgaacctcttttgaagaaggcttatgaagaacccgatcctgatgcctctgtgtcaaacggcattattcagccagtatctagatctaatgacaatttggtgcttccaaatgaaatgcccagtatgcagatcgatgcaccaaatccagatgatcaagaaattcaaataattcaagaccctgtttcagttgcttgtacacgtatgcagaagaccattgagatgttgcaaactgaagttaatcccacacaagctaccacaggcctccaaactctatttaagataataaggaatgttcctgaacacccatcgaaatacagaagactgcgcaaggctaagaacgtcgcaaactacaaggctgccatagaatttctgtttctgattggcttcgacaagaacgttgtggatgaaattggacgaccagaaacttatctagtgttgaagcgggatgatccggccttattgtggcctgccaagtcttcctatctgaaatctcccttgtattgtgctccatgtactgcttacatattgaacgtgtggcattgtaacatgtttgtttatgcagaacatttatcccatgtattcccttctgtgcgaaccaatgtatattatacccaattcgctgaccttctcatgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0006464 GO:0006508 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0008270 GO:0009987 GO:0016787 GO:0016925 GO:0018193 GO:0018205 GO:0019538 GO:0032446 GO:0033554 GO:0036211 GO:0043167 GO:0043169 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044877 GO:0046872 GO:0046914 GO:0050896 GO:0051716 GO:0070011 GO:0070628 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PUB WLM

Protein Analysis

219

Amino Acids

24.83

Weight (kDa)

6.09

Isoelectric Point (pI)

51.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PUB	PF09409	91 - 160	1.5e-07	PUB domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004067)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35690
fragaria_vesca	FvH4_6g41820 FvH4_6g41820 FvH4_6g41820 FvH4_6g41820 FvH4_6g41820 FvH4_6g41820 FvH4_6g41820 FvH4_6g41820
malus_domestica	MD09G1117000.v1.1 MD17G1108500.v1.1
prunus_persica	Prupe.3G206900_v2.0.a1 Prupe.3G206900_v2.0.a1 Prupe.3G206900_v2.0.a1 Prupe.3G206900_v2.0.a1
pyrus_communis	pycom09g04190 pycom09g04200 pycom17g10100
rosa_chinensis	RchiOBHm_Chr2g0157621
rosa_laevigata	RLG00000021001 RLG00000021004
rosa_multiflora	Rmu_co8368661.1_g000001 Rmu_sc0000195.1_g000050 Rmu_sc0005255.1_g000015 Rmu_sc0006475.1_g000002 Rmu_sc0015282.1_g000001
rosa_roxburghii	Rroxscaffold_2G00092080
rosa_rugosa	Rorug02G0462400
rosa_samantha	Rh2AG526500 Rh2BG541400 Rh2CG511200 Rh2DG549900
rosa_wichuraiana	Rw2G043610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	350
AccB7I	CCANNNNNTGG	1 cut(s)	20
AciI	CCGC	1 cut(s)	466
AclI	AACGTT	1 cut(s)	420
AclWI	GGATC	2 cut(s)	56, 467
AcsI	RAATTY	2 cut(s)	183, 389
AcuI	CTGAAG	1 cut(s)	276
AfaI	GTAC	2 cut(s)	220, 538
AfiI	CCNNNNNNNGG	2 cut(s)	20, 486
AflIII	ACRYGT	3 cut(s)	221, 555, 570
AgsI	TTSAA	5 cut(s)	40, 188, 197, 463, 553
AluBI	AGCT	2 cut(s)	17, 275
AluI	AGCT	2 cut(s)	17, 275
Alw21I	GWGCWC	1 cut(s)	532
AlwI	GGATC	2 cut(s)	56, 467
AlwNI	CAGNNNCTG	1 cut(s)	20
AoxI	GGCC	3 cut(s)	283, 477, 488
ApeKI	GCWGC	2 cut(s)	17, 380
ApoI	RAATTY	2 cut(s)	183, 389
AspLEI	GCGC	1 cut(s)	351
BbsI	GAAGAC	3 cut(s)	239, 349, 492
Bbv12I	GWGCWC	1 cut(s)	532
BbvI	GCAGC	2 cut(s)	4, 367
BccI	CCATC	1 cut(s)	337
BceAI	ACGGC	1 cut(s)	100
BcgI	CGANNNNNNTGC	2 cut(s)	50, 84
BclI	TGATCA	1 cut(s)	175
BfaI	CTAG	2 cut(s)	105, 455
BglII	AGATCT	1 cut(s)	107
BisI	GCNGC	2 cut(s)	18, 381
BlsI	GCNGC	2 cut(s)	19, 382
BmrI	ACTGGG	1 cut(s)	138
BmsI	GCATC	2 cut(s)	58, 148
BmuI	ACTGGG	1 cut(s)	138
BpiI	GAAGAC	3 cut(s)	239, 349, 492
Bsa29I	ATCGAT	1 cut(s)	156
BsaAI	YACGTR	1 cut(s)	224
Bsc4I	CCNNNNNNNGG	2 cut(s)	20, 486
Bse1I	ACTGG	2 cut(s)	98, 144
BseCI	ATCGAT	1 cut(s)	156
BseGI	GGATG	2 cut(s)	433, 475
BseLI	CCNNNNNNNGG	2 cut(s)	20, 486
BseNI	ACTGG	2 cut(s)	98, 144
BseXI	GCAGC	2 cut(s)	4, 367
BshFI	GGCC	3 cut(s)	285, 479, 490
BshVI	ATCGAT	1 cut(s)	156
BsiHKAI	GWGCWC	1 cut(s)	532
BsiSI	CCGG	1 cut(s)	476
BslI	CCNNNNNNNGG	2 cut(s)	20, 486
BsnI	GGCC	3 cut(s)	285, 479, 490
Bsp1286I	GDGCHC	1 cut(s)	532
Bsp1407I	TGTACA	1 cut(s)	218
Bsp143I	GATC	5 cut(s)	61, 107, 153, 175, 472
BspACI	CCGC	1 cut(s)	466
BspANI	GGCC	3 cut(s)	285, 479, 490
BspDI	ATCGAT	1 cut(s)	156
BspPI	GGATC	2 cut(s)	56, 467
BsrGI	TGTACA	1 cut(s)	218
BsrI	ACTGG	2 cut(s)	98, 144
BssMI	GATC	5 cut(s)	61, 107, 153, 175, 472
BstAUI	TGTACA	1 cut(s)	218
BstBAI	YACGTR	1 cut(s)	224
BstC8I	GCNNGC	2 cut(s)	22, 492
BstDEI	CTNAG	1 cut(s)	357
BstF5I	GGATG	2 cut(s)	433, 475
BstHHI	GCGC	1 cut(s)	351
BstKTI	GATC	5 cut(s)	64, 110, 156, 178, 475
BstMBI	GATC	5 cut(s)	61, 107, 153, 175, 472
BstMWI	GCNNNNNNNGC	1 cut(s)	148
BstNSI	RCATGY	1 cut(s)	574
BstV1I	GCAGC	2 cut(s)	4, 367
BstV2I	GAAGAC	3 cut(s)	239, 349, 492
BstX2I	RGATCY	1 cut(s)	107
BstYI	RGATCY	1 cut(s)	107
Bsu15I	ATCGAT	1 cut(s)	156
BsuRI	GGCC	3 cut(s)	285, 479, 490
BsuTUI	ATCGAT	1 cut(s)	156
BtsCI	GGATG	2 cut(s)	433, 475
Cac8I	GCNNGC	2 cut(s)	22, 492
CaiI	CAGNNNCTG	1 cut(s)	20
CfoI	GCGC	1 cut(s)	351
ClaI	ATCGAT	1 cut(s)	156
Csp6I	GTAC	2 cut(s)	219, 537
CviAII	CATG	4 cut(s)	534, 571, 599, 655
CviQI	GTAC	2 cut(s)	219, 537
DdeI	CTNAG	1 cut(s)	357
DpnI	GATC	5 cut(s)	63, 109, 155, 177, 474
DpnII	GATC	5 cut(s)	61, 107, 153, 175, 472
Eco147I	AGGCCT	1 cut(s)	285
Eco57I	CTGAAG	1 cut(s)	276
FaeI	CATG	4 cut(s)	537, 574, 602, 658
FatI	CATG	4 cut(s)	533, 570, 598, 654
FauI	CCCGC	1 cut(s)	459
FbaI	TGATCA	1 cut(s)	175
Fnu4HI	GCNGC	2 cut(s)	18, 381
FokI	GGATG	2 cut(s)	440, 482
Fsp4HI	GCNGC	2 cut(s)	18, 381
FspBI	CTAG	2 cut(s)	105, 455
FspI	TGCGCA	1 cut(s)	350
GlaI	GCGC	1 cut(s)	350
GluI	GCNGC	2 cut(s)	18, 381
HaeIII	GGCC	3 cut(s)	285, 479, 490
HapII	CCGG	1 cut(s)	476
HhaI	GCGC	1 cut(s)	351
Hin1II	CATG	4 cut(s)	537, 574, 602, 658
Hin6I	GCGC	1 cut(s)	349
HinP1I	GCGC	1 cut(s)	349
HpaII	CCGG	1 cut(s)	476
Hpy166II	GTNNAC	1 cut(s)	221
Hpy188I	TCNGA	3 cut(s)	28, 402, 510
Hpy188III	TCNNGA	6 cut(s)	65, 105, 170, 179, 197, 320
Hpy8I	GTNNAC	1 cut(s)	221
Hpy99I	CGWCG	1 cut(s)	368
HpyAV	CCTTC	3 cut(s)	37, 618, 659
HpyCH4IV	ACGT	4 cut(s)	223, 363, 420, 555
HpyCH4V	TGCA	6 cut(s)	4, 151, 161, 229, 250, 584
HpyF10VI	GCNNNNNNNGC	1 cut(s)	148
HpyF3I	CTNAG	1 cut(s)	357
HpySE526I	ACGT	4 cut(s)	223, 363, 420, 555
Hsp92II	CATG	4 cut(s)	537, 574, 602, 658
HspAI	GCGC	1 cut(s)	349
Ksp22I	TGATCA	1 cut(s)	175
Kzo9I	GATC	5 cut(s)	61, 107, 153, 175, 472
LmnI	GCTCC	1 cut(s)	535
Lsp1109I	GCAGC	2 cut(s)	4, 367
LweI	GCATC	2 cut(s)	58, 148
MaeI	CTAG	2 cut(s)	105, 455
MaeII	ACGT	4 cut(s)	223, 363, 420, 555
MaeIII	GTNAC	1 cut(s)	566
MalI	GATC	5 cut(s)	63, 109, 155, 177, 474
MboI	GATC	5 cut(s)	61, 107, 153, 175, 472
MboII	GAAGA	5 cut(s)	52, 65, 244, 354, 492
MflI	RGATCY	1 cut(s)	107
MhlI	GDGCHC	1 cut(s)	532
MluCI	AATT	6 cut(s)	118, 183, 192, 389, 432, 638
MnlI	CCTC	3 cut(s)	42, 82, 296
MseI	TTAA	2 cut(s)	261, 300
MslI	CAYNNNNRTG	1 cut(s)	242
MspA1I	CMGCKG	1 cut(s)	17
MspI	CCGG	1 cut(s)	476
MwoI	GCNNNNNNNGC	1 cut(s)	148
NdeII	GATC	5 cut(s)	61, 107, 153, 175, 472
NlaIII	CATG	4 cut(s)	537, 574, 602, 658
NsbI	TGCGCA	1 cut(s)	350
NspI	RCATGY	1 cut(s)	574
PceI	AGGCCT	1 cut(s)	285
PciI	ACATGT	1 cut(s)	570
PcsI	WCGNNNNNNNCGW	1 cut(s)	417
PflMI	CCANNNNNTGG	1 cut(s)	20
PkrI	GCNGC	2 cut(s)	19, 382
Ppu21I	YACGTR	1 cut(s)	224
PscI	ACATGT	1 cut(s)	570
Psp1406I	AACGTT	1 cut(s)	420
PstNI	CAGNNNCTG	1 cut(s)	20
PsuI	RGATCY	1 cut(s)	107
PvuII	CAGCTG	1 cut(s)	17
RsaI	GTAC	2 cut(s)	220, 538
RsaNI	GTAC	2 cut(s)	219, 537
RseI	CAYNNNNRTG	1 cut(s)	242
SaqAI	TTAA	2 cut(s)	261, 300
SatI	GCNGC	2 cut(s)	18, 381
Sau3AI	GATC	5 cut(s)	61, 107, 153, 175, 472
SduI	GDGCHC	1 cut(s)	532
SetI	ASST	8 cut(s)	19, 34, 226, 277, 366, 423, 558, 651
SfaNI	GCATC	2 cut(s)	58, 148
SmiMI	CAYNNNNRTG	1 cut(s)	242
Sse9I	AATT	6 cut(s)	118, 183, 192, 389, 432, 638
SseBI	AGGCCT	1 cut(s)	285
SsiI	CCGC	1 cut(s)	466
SspMI	CTAG	2 cut(s)	105, 455
StuI	AGGCCT	1 cut(s)	285
TaiI	ACGT	4 cut(s)	226, 366, 423, 558
TaqI	TCGA	3 cut(s)	156, 332, 411
TasI	AATT	6 cut(s)	118, 183, 192, 389, 432, 638
TatI	WGTACW	2 cut(s)	218, 536
Tru1I	TTAA	2 cut(s)	261, 300
Tru9I	TTAA	2 cut(s)	261, 300
TseI	GCWGC	2 cut(s)	17, 380
TspDTI	ATGAA	3 cut(s)	66, 150, 444
Van91I	CCANNNNNTGG	1 cut(s)	20
XapI	RAATTY	2 cut(s)	183, 389
XbaI	TCTAGA	1 cut(s)	104
XceI	RCATGY	1 cut(s)	574
XspI	CTAG	2 cut(s)	105, 455

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.