Rmu_sc0006493.1_g000014

UPF0496 protein At4g34320-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006493.1
OG0008837
Physical Location & Seq
Reverse (-)
52091 .. 53269
1179 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1179 bp
atgacgacacatacagctaagattcctatgaaaaattcctatgtcaagttagtctccacagctgaatggaagtcatttcaggaagcttgcaaggaaaatgcagacttgcaatcgtgggacacagacctcaaaacccatgcagaagaaatgttgaaaaccctcaaggatgaaggaattctctcgattgattcctggaaaccattcacacactatgcgtgcaattcaaacaagaagattgtgcagcatatcttggcattcaaggaagacataactaaagggaaggggagtagtaagaagaagaagagaaacgaagaaagagtgaacatcatggctgatgagtacattaagaatagctcaaatatgctggatttcctttctgagatagaaaacttcctcatgcttgctcgtaatagccattcatatattgcaacagtgattcaacagtactttgtggcacacaatggcatgagtactgaagctgagtcctacgggaagattgcagataacttaaaaaagctcaaggactctgataataccttcgaccattctgctgaaaatttgctcaaaaaggcagtaagtttgaagagtcagcatgaagaaatgcttcataaattgcaagacgaaatcaataaatttagtaagaaggagaaacgcacgaaatcatggaagaacctcgcgtatatgatatttgtaggcgctgtggttggtttggctattgccggaattgcgactgcagtcatagctgctccacctcttgcagcagcaattgctgctgccattgtcccaacagcaacggctggacactggactatctcttggtttgaagagtctgaaaaagcatttaagaatcagcgggaagtaaatgaggcgaggcgtaaggaaactagaattgccattaaagagttgggcaacattaagtcttcgattgatggtgttattaaacagattaattcagtcatgcacaagccatgccctgtaatggatcgggaactattagatttcacaatgaaggaaatcaagagcaagctgggagagtttctgaataaggttgaggttttggagaaggacatagaaaagaccaaaaaggatataaggaaggcaagggatgatgttcatatcatggacacccaggtcaagcaggtcaaaaaaaggagtagtttgttttcaaaattagtatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF677

Protein Analysis

392

Amino Acids

44.55

Weight (kDa)

9.25

Isoelectric Point (pI)

40.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF677 PF05055 36 - 370 8.9e-43 Protein of unknown function (DUF677)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1130
Acc36I ACCTGC 1 cut(s) 1129
AccII CGCG 1 cut(s) 677
AciI CCGC 1 cut(s) 853
AclWI GGATC 1 cut(s) 990
AcsI RAATTY 4 cut(s) 34, 174, 556, 632
AcuI CTGAAG 1 cut(s) 495
AfaI GTAC 3 cut(s) 341, 446, 472
AfiI CCNNNNNNNGG 1 cut(s) 979
AgsI TTSAA 7 cut(s) 154, 225, 259, 440, 583, 824, 1167
AjnI CCWGG 2 cut(s) 191, 1128
AluBI AGCT 8 cut(s) 17, 62, 86, 354, 479, 517, 743, 1027
AluI AGCT 8 cut(s) 17, 62, 86, 354, 479, 517, 743, 1027
Alw26I GTCTC 1 cut(s) 58
AlwI GGATC 1 cut(s) 990
ApeKI GCWGC 6 cut(s) 241, 743, 758, 761, 770, 773
ApoI RAATTY 4 cut(s) 34, 174, 556, 632
AseI ATTAAT 1 cut(s) 948
Asp700I GAANNNNTTC 3 cut(s) 174, 200, 603
AspLEI GCGC 1 cut(s) 698
BbsI GAAGAC 2 cut(s) 270, 912
BbvI GCAGC 6 cut(s) 253, 730, 757, 760, 770, 773
BccI CCATC 1 cut(s) 923
BceAI ACGGC 1 cut(s) 810
BcgI CGANNNNNNTGC 2 cut(s) 530, 564
BciT130I CCWGG 2 cut(s) 193, 1130
BcoDI GTCTC 1 cut(s) 58
BfaI CTAG 1 cut(s) 885
BfmI CTRYAG 1 cut(s) 732
BfoI RGCGCY 1 cut(s) 699
BfuAI ACCTGC 1 cut(s) 1129
BisI GCNGC 6 cut(s) 242, 744, 759, 762, 771, 774
BlsI GCNGC 6 cut(s) 243, 745, 760, 763, 772, 775
BmcAI AGTACT 2 cut(s) 446, 472
Bme1390I CCNGG 2 cut(s) 193, 1130
BmrFI CCNGG 2 cut(s) 193, 1130
BoxI GACNNNNGTC 1 cut(s) 734
BpiI GAAGAC 2 cut(s) 270, 912
BpuEI CTTGAG 2 cut(s) 146, 503
BsaJI CCNNGG 1 cut(s) 1128
Bsc4I CCNNNNNNNGG 1 cut(s) 979
Bse1I ACTGG 1 cut(s) 809
BseBI CCWGG 2 cut(s) 193, 1130
BseDI CCNNGG 1 cut(s) 1128
BseGI GGATG 2 cut(s) 172, 1111
BseLI CCNNNNNNNGG 1 cut(s) 979
BseMII CTCAG 2 cut(s) 369, 471
BseNI ACTGG 1 cut(s) 809
BseXI GCAGC 6 cut(s) 253, 730, 757, 760, 770, 773
BseYI CCCAGC 1 cut(s) 1027
BsgI GTGCAG 1 cut(s) 260
Bsh1236I CGCG 1 cut(s) 677
BsiSI CCGG 1 cut(s) 720
BslFI GGGAC 2 cut(s) 131, 767
BslI CCNNNNNNNGG 1 cut(s) 979
BsmAI GTCTC 1 cut(s) 58
BsmFI GGGAC 2 cut(s) 131, 767
BsmI GAATGC 1 cut(s) 254
Bsp143I GATC 1 cut(s) 982
BspACI CCGC 1 cut(s) 853
BspCNI CTCAG 2 cut(s) 370, 472
BspFNI CGCG 1 cut(s) 677
BspMAI CTGCAG 1 cut(s) 736
BspMI ACCTGC 1 cut(s) 1129
BspPI GGATC 1 cut(s) 990
BsrI ACTGG 1 cut(s) 809
BssECI CCNNGG 1 cut(s) 1128
BssMI GATC 1 cut(s) 982
Bst2UI CCWGG 2 cut(s) 193, 1130
Bst4CI ACNGT 2 cut(s) 433, 444
Bst6I CTCTTC 3 cut(s) 296, 578, 819
BstAPI GCANNNNNTGC 2 cut(s) 767, 770
BstC8I GCNNGC 4 cut(s) 88, 217, 402, 1025
BstDEI CTNAG 3 cut(s) 18, 378, 480
BstF5I GGATG 2 cut(s) 172, 1111
BstFNI CGCG 1 cut(s) 677
BstH2I RGCGCY 1 cut(s) 699
BstHHI GCGC 1 cut(s) 698
BstKTI GATC 1 cut(s) 985
BstMAI GTCTC 1 cut(s) 58
BstMBI GATC 1 cut(s) 982
BstMWI GCNNNNNNNGC 4 cut(s) 725, 740, 767, 770
BstNI CCWGG 2 cut(s) 193, 1130
BstPAI GACNNNNGTC 1 cut(s) 734
BstSCI CCNGG 2 cut(s) 191, 1128
BstSFI CTRYAG 1 cut(s) 732
BstUI CGCG 1 cut(s) 677
BstV1I GCAGC 6 cut(s) 253, 730, 757, 760, 770, 773
BstV2I GAAGAC 2 cut(s) 270, 912
BtsCI GGATG 2 cut(s) 172, 1111
BtsIMutI CAGTG 2 cut(s) 438, 802
BveI ACCTGC 1 cut(s) 1129
Cac8I GCNNGC 4 cut(s) 88, 217, 402, 1025
CfoI GCGC 1 cut(s) 698
Csp6I GTAC 3 cut(s) 340, 445, 471
CviAII CATG 9 cut(s) 137, 328, 397, 466, 593, 663, 958, 969, 1120
CviQI GTAC 3 cut(s) 340, 445, 471
DdeI CTNAG 3 cut(s) 18, 378, 480
DpnI GATC 1 cut(s) 984
DpnII GATC 1 cut(s) 982
DrdI GACNNNNNNGTC 1 cut(s) 1130
DseDI GACNNNNNNGTC 1 cut(s) 1130
Eam1104I CTCTTC 3 cut(s) 296, 578, 819
EarI CTCTTC 3 cut(s) 296, 578, 819
Eco57I CTGAAG 1 cut(s) 495
EcoRI GAATTC 1 cut(s) 174
EcoRII CCWGG 2 cut(s) 191, 1128
FaeI CATG 9 cut(s) 140, 331, 400, 469, 596, 666, 961, 972, 1123
FalI AAGNNNNNCTT 2 cut(s) 588, 620
FaqI GGGAC 2 cut(s) 131, 767
FatI CATG 9 cut(s) 136, 327, 396, 465, 592, 662, 957, 968, 1119
FauI CCCGC 1 cut(s) 846
Fnu4HI GCNGC 6 cut(s) 242, 744, 759, 762, 771, 774
FokI GGATG 2 cut(s) 179, 1118
Fsp4HI GCNGC 6 cut(s) 242, 744, 759, 762, 771, 774
FspBI CTAG 1 cut(s) 885
GlaI GCGC 1 cut(s) 697
GluI GCNGC 6 cut(s) 242, 744, 759, 762, 771, 774
GsaI CCCAGC 1 cut(s) 1031
HaeII RGCGCY 1 cut(s) 699
HapII CCGG 1 cut(s) 720
HhaI GCGC 1 cut(s) 698
Hin1II CATG 9 cut(s) 140, 331, 400, 469, 596, 666, 961, 972, 1123
Hin6I GCGC 1 cut(s) 696
HinP1I GCGC 1 cut(s) 696
HindIII AAGCTT 1 cut(s) 84
HinfI GANTC 8 cut(s) 22, 188, 436, 482, 524, 586, 827, 847
HpaII CCGG 1 cut(s) 720
Hpy166II GTNNAC 1 cut(s) 322
Hpy188I TCNGA 4 cut(s) 379, 529, 832, 1041
Hpy188III TCNNGA 4 cut(s) 80, 181, 986, 1018
Hpy8I GTNNAC 1 cut(s) 322
HpyAV CCTTC 7 cut(s) 164, 274, 547, 637, 1003, 1057, 1090
HpyCH4III ACNGT 2 cut(s) 433, 444
HpyF10VI GCNNNNNNNGC 4 cut(s) 725, 740, 767, 770
HpyF3I CTNAG 3 cut(s) 18, 378, 480
Hsp92II CATG 9 cut(s) 140, 331, 400, 469, 596, 666, 961, 972, 1123
HspAI GCGC 1 cut(s) 696
Kzo9I GATC 1 cut(s) 982
LmnI GCTCC 1 cut(s) 751
Lsp1109I GCAGC 6 cut(s) 253, 730, 757, 760, 770, 773
MaeI CTAG 1 cut(s) 885
MalI GATC 1 cut(s) 984
MboI GATC 1 cut(s) 982
MfeI CAATTG 1 cut(s) 765
MlyI GAGTC 4 cut(s) 491, 518, 595, 836
MnlI CCTC 8 cut(s) 137, 170, 404, 683, 762, 859, 864, 1045
MroXI GAANNNNTTC 3 cut(s) 174, 200, 603
MseI TTAA 7 cut(s) 345, 509, 843, 897, 915, 939, 948
MspA1I CMGCKG 2 cut(s) 62, 853
MspI CCGG 1 cut(s) 720
MspR9I CCNGG 2 cut(s) 193, 1130
MunI CAATTG 1 cut(s) 765
Mva1269I GAATGC 1 cut(s) 254
MvaI CCWGG 2 cut(s) 193, 1130
MvnI CGCG 1 cut(s) 677
MwoI GCNNNNNNNGC 4 cut(s) 725, 740, 767, 770
NdeII GATC 1 cut(s) 982
NlaIII CATG 9 cut(s) 140, 331, 400, 469, 596, 666, 961, 972, 1123
PctI GAATGC 1 cut(s) 254
PdmI GAANNNNTTC 3 cut(s) 174, 200, 603
PfeI GAWTC 4 cut(s) 22, 188, 436, 847
PfoI TCCNGGA 1 cut(s) 191
PkrI GCNGC 6 cut(s) 243, 745, 760, 763, 772, 775
PleI GAGTC 4 cut(s) 490, 518, 594, 835
PpsI GAGTC 4 cut(s) 490, 518, 594, 835
PshAI GACNNNNGTC 1 cut(s) 734
PshBI ATTAAT 1 cut(s) 948
Psp6I CCWGG 2 cut(s) 191, 1128
PspFI CCCAGC 1 cut(s) 1027
PspGI CCWGG 2 cut(s) 191, 1128
PstI CTGCAG 1 cut(s) 736
PvuII CAGCTG 1 cut(s) 62
RsaI GTAC 3 cut(s) 341, 446, 472
RsaNI GTAC 3 cut(s) 340, 445, 471
SaqAI TTAA 7 cut(s) 345, 509, 843, 897, 915, 939, 948
SatI GCNGC 6 cut(s) 242, 744, 759, 762, 771, 774
Sau3AI GATC 1 cut(s) 982
ScaI AGTACT 2 cut(s) 446, 472
SchI GAGTC 4 cut(s) 491, 518, 595, 836
ScrFI CCNGG 2 cut(s) 193, 1130
SfcI CTRYAG 1 cut(s) 732
SmlI CTYRAG 2 cut(s) 161, 518
SmoI CTYRAG 2 cut(s) 161, 518
SsiI CCGC 1 cut(s) 853
SspMI CTAG 1 cut(s) 885
StyD4I CCNGG 2 cut(s) 191, 1128
TaaI ACNGT 2 cut(s) 433, 444
TaqI TCGA 3 cut(s) 182, 540, 923
TatI WGTACW 3 cut(s) 339, 444, 470
TfiI GAWTC 4 cut(s) 22, 188, 436, 847
Tru1I TTAA 7 cut(s) 345, 509, 843, 897, 915, 939, 948
Tru9I TTAA 7 cut(s) 345, 509, 843, 897, 915, 939, 948
TscAI CASTG 2 cut(s) 438, 809
TseI GCWGC 6 cut(s) 241, 743, 758, 761, 770, 773
TspDTI ATGAA 7 cut(s) 44, 183, 408, 596, 609, 1022, 1103
TspRI CASTG 2 cut(s) 438, 809
VspI ATTAAT 1 cut(s) 948
XapI RAATTY 4 cut(s) 34, 174, 556, 632
XcmI CCANNNNNNNNNTGG 1 cut(s) 901
XmnI GAANNNNTTC 3 cut(s) 174, 200, 603
XspI CTAG 1 cut(s) 885
ZrmI AGTACT 2 cut(s) 446, 472
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.