Rmu_sc0006885.1_g000007

HAT (Half-A-TPR) repeats

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006885.1
OG0005841
Physical Location & Seq
Reverse (-)
40619 .. 45608
4990 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1416 bp
tcattgttggatgaagatgaatatgacttgttcatagttgggagacgacacaacgtgaggagtgctcagacaataggtcttgacgactggagtgaatacccggagcttggggtcattggagacgtgctttcatccaccgacgactcgggttgcaaatctagtgtcttgatagcaatgcaatgccagaatgagcacttgttcaacttagataaggctgagcccatggaaccagcgactccagatgaaattcaccgagcttcgctggacttcgatcactggacctcactcatttcgcagatagagaattcctatcctgatgacatggagaaaatatgctcagtgtatgattctttcttggccgagtttccgttgtgccatggatattggaggaggtatgctgagcataagatgcgtttgtgctccattgacaaggttgttgaggtctttgaacgagctctgcaagctgcaacctactgtgttccgctgtgggtggactactgtgttttcagtatgtcctttttcgaagatccttccgatattcgcagactatttaaaagagggatgtcctttgttcgaaaggactatgggtgctatactttgtgggacaaatacattgaatttgagtactctcagcaggaatggagttcactggccctgatttacatccaagctcttagattccctaccaagaagttgcatatttattatgcgagtttgaagaagttggctaccttgtttgaagaggagatgaaaagccagagtaattctactgtggatttgcagtcagaagctttatttgatggtgaagtccctaggttttttggagatgatgaaatttctcttgtagtcaaagaccttctggatccagcaattggctcaggaaggtctaaagcactgcaaagatacatatgtattgggaaacagttgtatcacgaagcatgccagcttgatgaaaagattggtacttttgagattaatataaggaggtcttacttccatgtaaaggagcttgatgcgggtcagttggagaattggcatcgctatctggactatgttgagatgcaaggggattttgattgggcggtgaagctttatgagaggtgcttgattccctgtgctaattaccctgagttttggatgcgttatgtggatttcgtggaaatcaatggaggaagagaaattgcaaactattctcttgaccgagcaacccaaatatttgtgaagagagtgtcggtgattcatcttttgaatgccaagttcaaggagcaaataggagatgtacttggtgcccgtgcggctcttcttcaatgtaatgcagagtcagatacacacttcgttaagaatgttatcttaaaggctaatatggaaaaacgtttggtatgcaatatggtctttcatcactcaaacaaatattag

Protein Analysis

471

Amino Acids

54.93

Weight (kDa)

5.15

Isoelectric Point (pI)

44.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Suf PF05843 81 - 207 2.3e-10 Suppressor of forked protein (Suf)
HAT_Syf1_CNRKL1_N PF23233 81 - 221 2.9e-08 Pre-mRNA-splicing factor Syf1/CNRKL1 N-terminal HAT repeat
HAT_PRP39_N PF23240 83 - 240 5.2e-48 PRP39 N-terminal HAT repeat
HAT_PRP39_C PF23241 319 - 458 7.2e-42 PRP39 C-terminal HAT repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1286
AccB7I CCANNNNNTGG 1 cut(s) 872
AciI CCGC 4 cut(s) 482, 1016, 1082, 1295
AclI AACGTT 1 cut(s) 1372
AclWI GGATC 3 cut(s) 521, 857, 870
AcoI YGGCCR 1 cut(s) 357
AcsI RAATTY 4 cut(s) 246, 304, 617, 834
AdeI CACNNNGTG 1 cut(s) 55
AfaI GTAC 3 cut(s) 626, 964, 1281
AfiI CCNNNNNNNGG 3 cut(s) 107, 872, 1003
AgsI TTSAA 8 cut(s) 202, 449, 617, 718, 740, 1249, 1261, 1307
AhdI GACNNNNNGTC 1 cut(s) 75
AjiI CACGTC 1 cut(s) 124
AluBI AGCT 9 cut(s) 106, 257, 455, 464, 671, 791, 946, 1009, 1090
AluI AGCT 9 cut(s) 106, 257, 455, 464, 671, 791, 946, 1009, 1090
Alw21I GWGCWC 4 cut(s) 67, 195, 422, 457
Alw26I GTCTC 2 cut(s) 37, 114
AlwI GGATC 3 cut(s) 521, 857, 870
Ama87I CYCGRG 1 cut(s) 145
AoxI GGCC 2 cut(s) 357, 651
ApeKI GCWGC 1 cut(s) 464
ApoI RAATTY 4 cut(s) 246, 304, 617, 834
ArsI GACNNNNNNTTYG 2 cut(s) 147, 179
AseI ATTAAT 1 cut(s) 975
AspA2I CCTAGG 1 cut(s) 812
AspS9I GGNCC 2 cut(s) 279, 652
AsuC2I CCSGG 1 cut(s) 101
AsuHPI GGTGA 4 cut(s) 242, 815, 1096, 1246
AsuII TTCGAA 2 cut(s) 522, 574
AvaI CYCGRG 1 cut(s) 145
AvaII GGWCC 1 cut(s) 279
AvrII CCTAGG 1 cut(s) 812
BaeGI GKGCMC 1 cut(s) 1291
BaeI ACNNNNGTAYC 4 cut(s) 895, 911, 928, 944
BamHI GGATCC 1 cut(s) 862
BanI GGYRCC 1 cut(s) 1286
BanII GRGCYC 2 cut(s) 222, 457
Bbv12I GWGCWC 4 cut(s) 67, 195, 422, 457
BbvI GCAGC 1 cut(s) 451
BccI CCATC 1 cut(s) 794
BcnI CCSGG 1 cut(s) 101
BcoDI GTCTC 2 cut(s) 37, 114
BfaI CTAG 2 cut(s) 159, 813
BglI GCCNNNNNGGC 1 cut(s) 1295
BisI GCNGC 2 cut(s) 465, 1296
BlnI CCTAGG 1 cut(s) 812
BlpI GCTNAGC 2 cut(s) 216, 399
BlsI GCNGC 2 cut(s) 466, 1297
BmcAI AGTACT 1 cut(s) 626
Bme1390I CCNGG 1 cut(s) 101
Bme18I GGWCC 1 cut(s) 279
BmeRI GACNNNNNGTC 1 cut(s) 75
BmeT110I CYCGRG 1 cut(s) 145
BmgBI CACGTC 1 cut(s) 124
BmgT120I GGNCC 2 cut(s) 279, 652
BmiI GGNNCC 3 cut(s) 228, 864, 1288
BmrFI CCNGG 1 cut(s) 101
BmsI GCATC 5 cut(s) 399, 1003, 1045, 1050, 1128
BplI GAGNNNNNCTC 2 cut(s) 49, 81
BpmI CTGGAG 2 cut(s) 109, 222
Bpu10I CCTNAGC 1 cut(s) 877
Bpu1102I GCTNAGC 2 cut(s) 216, 399
Bpu14I TTCGAA 2 cut(s) 522, 574
BpuMI CCSGG 1 cut(s) 101
BsaBI GATNNNNATC 1 cut(s) 662
BsaJI CCNNGG 3 cut(s) 222, 376, 812
Bsc4I CCNNNNNNNGG 3 cut(s) 107, 872, 1003
Bse1I ACTGG 3 cut(s) 92, 281, 654
Bse3DI GCAATG 2 cut(s) 180, 185
Bse8I GATNNNNATC 1 cut(s) 662
BseDI CCNNGG 3 cut(s) 222, 376, 812
BseGI GGATG 5 cut(s) 16, 131, 567, 663, 1143
BseJI GATNNNNATC 1 cut(s) 662
BseLI CCNNNNNNNGG 3 cut(s) 107, 872, 1003
BseMI GCAATG 2 cut(s) 180, 185
BseMII CTCAG 7 cut(s) 80, 207, 351, 390, 644, 891, 1119
BseNI ACTGG 3 cut(s) 92, 281, 654
BseRI GAGGAG 3 cut(s) 73, 403, 758
BseSI GKGCMC 1 cut(s) 1291
BseXI GCAGC 1 cut(s) 451
BshFI GGCC 2 cut(s) 359, 653
BshNI GGYRCC 1 cut(s) 1286
BsiHKAI GWGCWC 4 cut(s) 67, 195, 422, 457
BsiHKCI CYCGRG 1 cut(s) 145
BsiSI CCGG 1 cut(s) 101
BslFI GGGAC 2 cut(s) 617, 794
BslI CCNNNNNNNGG 3 cut(s) 107, 872, 1003
BsmAI GTCTC 2 cut(s) 37, 114
BsmBI CGTCTC 2 cut(s) 37, 114
BsmFI GGGAC 2 cut(s) 617, 794
BsmI GAATGC 1 cut(s) 1255
BsnI GGCC 2 cut(s) 359, 653
BsoBI CYCGRG 1 cut(s) 145
Bsp119I TTCGAA 2 cut(s) 522, 574
Bsp1286I GDGCHC 6 cut(s) 67, 195, 222, 422, 457, 1291
Bsp143I GATC 3 cut(s) 271, 526, 862
Bsp1720I GCTNAGC 2 cut(s) 216, 399
Bsp19I CCATGG 2 cut(s) 222, 376
BspACI CCGC 4 cut(s) 482, 1016, 1082, 1295
BspANI GGCC 2 cut(s) 359, 653
BspCNI CTCAG 7 cut(s) 79, 208, 350, 391, 643, 890, 1120
BspLI GGNNCC 3 cut(s) 228, 864, 1288
BspPI GGATC 3 cut(s) 521, 857, 870
BspQI GCTCTTC 1 cut(s) 1305
BspT104I TTCGAA 2 cut(s) 522, 574
BspT107I GGYRCC 1 cut(s) 1286
BsrDI GCAATG 2 cut(s) 180, 185
BsrI ACTGG 3 cut(s) 92, 281, 654
BssECI CCNNGG 3 cut(s) 222, 376, 812
BssMI GATC 3 cut(s) 271, 526, 862
BssT1I CCWWGG 3 cut(s) 222, 376, 812
Bst4CI ACNGT 4 cut(s) 476, 500, 772, 924
Bst6I CTCTTC 4 cut(s) 735, 1168, 1217, 1305
BstAPI GCANNNNNTGC 1 cut(s) 409
BstBI TTCGAA 2 cut(s) 522, 574
BstC8I GCNNGC 3 cut(s) 462, 940, 944
BstDEI CTNAG 9 cut(s) 66, 205, 216, 337, 399, 630, 674, 877, 1128
BstDSI CCRYGG 2 cut(s) 222, 376
BstF5I GGATG 5 cut(s) 16, 131, 567, 663, 1143
BstKTI GATC 3 cut(s) 274, 529, 865
BstMAI GTCTC 2 cut(s) 37, 114
BstMBI GATC 3 cut(s) 271, 526, 862
BstMWI GCNNNNNNNGC 3 cut(s) 409, 461, 1295
BstNSI RCATGY 1 cut(s) 942
BstSCI CCNGG 1 cut(s) 99
BstSLI GKGCMC 1 cut(s) 1291
BstV1I GCAGC 1 cut(s) 451
BstX2I RGATCY 2 cut(s) 526, 862
BstYI RGATCY 2 cut(s) 526, 862
BsuRI GGCC 2 cut(s) 359, 653
BtgI CCRYGG 2 cut(s) 222, 376
BtgZI GCGATG 1 cut(s) 1022
BtrI CACGTC 1 cut(s) 124
BtsCI GGATG 5 cut(s) 16, 131, 567, 663, 1143
BtsI GCAGTG 1 cut(s) 893
BtsIMutI CAGTG 4 cut(s) 274, 345, 647, 893
Cac8I GCNNGC 3 cut(s) 462, 940, 944
Cfr13I GGNCC 2 cut(s) 279, 652
Csp6I GTAC 3 cut(s) 625, 963, 1280
CviAII CATG 5 cut(s) 223, 322, 377, 939, 998
CviQI GTAC 3 cut(s) 625, 963, 1280
DdeI CTNAG 9 cut(s) 66, 205, 216, 337, 399, 630, 674, 877, 1128
DpnI GATC 3 cut(s) 273, 528, 864
DpnII GATC 3 cut(s) 271, 526, 862
DraI TTTAAA 1 cut(s) 553
DraIII CACNNNGTG 1 cut(s) 55
DriI GACNNNNNGTC 1 cut(s) 75
EaeI YGGCCR 1 cut(s) 357
Eam1104I CTCTTC 4 cut(s) 735, 1168, 1217, 1305
Eam1105I GACNNNNNGTC 1 cut(s) 75
EarI CTCTTC 4 cut(s) 735, 1168, 1217, 1305
Ecl136II GAGCTC 1 cut(s) 455
Eco130I CCWWGG 3 cut(s) 222, 376, 812
Eco24I GRGCYC 2 cut(s) 222, 457
Eco47I GGWCC 1 cut(s) 279
Eco53kI GAGCTC 1 cut(s) 455
Eco88I CYCGRG 1 cut(s) 145
EcoICRI GAGCTC 1 cut(s) 455
EcoRI GAATTC 1 cut(s) 304
EcoT14I CCWWGG 3 cut(s) 222, 376, 812
EcoT38I GRGCYC 2 cut(s) 222, 457
ErhI CCWWGG 3 cut(s) 222, 376, 812
Esp3I CGTCTC 2 cut(s) 37, 114
FaeI CATG 5 cut(s) 226, 325, 380, 942, 1001
FalI AAGNNNNNCTT 2 cut(s) 973, 1005
FaqI GGGAC 2 cut(s) 617, 794
FatI CATG 5 cut(s) 222, 321, 376, 938, 997
FauI CCCGC 1 cut(s) 1009
FauNDI CATATG 1 cut(s) 908
Fnu4HI GCNGC 2 cut(s) 465, 1296
FokI GGATG 5 cut(s) 23, 118, 574, 650, 1150
FriOI GRGCYC 2 cut(s) 222, 457
Fsp4HI GCNGC 2 cut(s) 465, 1296
FspBI CTAG 2 cut(s) 159, 813
GluI GCNGC 2 cut(s) 465, 1296
GsuI CTGGAG 2 cut(s) 109, 222
HaeIII GGCC 2 cut(s) 359, 653
HapII CCGG 1 cut(s) 101
Hin1II CATG 5 cut(s) 226, 325, 380, 942, 1001
HindIII AAGCTT 2 cut(s) 789, 1088
HinfI GANTC 7 cut(s) 143, 235, 347, 678, 1108, 1237, 1319
HpaII CCGG 1 cut(s) 101
HphI GGTGA 4 cut(s) 242, 815, 1096, 1246
Hpy166II GTNNAC 2 cut(s) 493, 647
Hpy188I TCNGA 4 cut(s) 69, 535, 787, 1324
Hpy188III TCNNGA 9 cut(s) 80, 166, 239, 314, 860, 879, 932, 1046, 1196
Hpy8I GTNNAC 2 cut(s) 493, 647
Hpy99I CGWCG 1 cut(s) 143
HpyAV CCTTC 3 cut(s) 540, 866, 876
HpyCH4III ACNGT 4 cut(s) 476, 500, 772, 924
HpyCH4IV ACGT 3 cut(s) 54, 123, 1372
HpyF10VI GCNNNNNNNGC 3 cut(s) 409, 461, 1295
HpyF3I CTNAG 9 cut(s) 66, 205, 216, 337, 399, 630, 674, 877, 1128
HpySE526I ACGT 3 cut(s) 54, 123, 1372
Hsp92II CATG 5 cut(s) 226, 325, 380, 942, 1001
Kzo9I GATC 3 cut(s) 271, 526, 862
LguI GCTCTTC 1 cut(s) 1305
LmnI GCTCC 4 cut(s) 103, 425, 1006, 1264
Lsp1109I GCAGC 1 cut(s) 451
LweI GCATC 5 cut(s) 399, 1003, 1045, 1050, 1128
MaeI CTAG 2 cut(s) 159, 813
MaeII ACGT 3 cut(s) 54, 123, 1372
MalI GATC 3 cut(s) 273, 528, 864
MboI GATC 3 cut(s) 271, 526, 862
MboII GAAGA 8 cut(s) 26, 536, 730, 752, 1185, 1234, 1292, 1295
MfeI CAATTG 1 cut(s) 870
MflI RGATCY 2 cut(s) 526, 862
MhlI GDGCHC 6 cut(s) 67, 195, 222, 422, 457, 1291
MluCI AATT 9 cut(s) 246, 304, 617, 763, 834, 870, 1030, 1120, 1179
MlyI GAGTC 3 cut(s) 137, 229, 1328
MmeI TCCRAC 1 cut(s) 1005
MseI TTAA 4 cut(s) 552, 975, 1338, 1352
MspA1I CMGCKG 1 cut(s) 484
MspI CCGG 1 cut(s) 101
MspR9I CCNGG 1 cut(s) 101
MunI CAATTG 1 cut(s) 870
Mva1269I GAATGC 1 cut(s) 1255
MwoI GCNNNNNNNGC 3 cut(s) 409, 461, 1295
NciI CCSGG 1 cut(s) 101
NcoI CCATGG 2 cut(s) 222, 376
NdeI CATATG 1 cut(s) 908
NdeII GATC 3 cut(s) 271, 526, 862
NlaIII CATG 5 cut(s) 226, 325, 380, 942, 1001
NlaIV GGNNCC 3 cut(s) 228, 864, 1288
NmeAIII GCCGAG 1 cut(s) 385
NspI RCATGY 1 cut(s) 942
NspV TTCGAA 2 cut(s) 522, 574
PaeI GCATGC 1 cut(s) 942
PciSI GCTCTTC 1 cut(s) 1305
PctI GAATGC 1 cut(s) 1255
PfeI GAWTC 4 cut(s) 347, 678, 1108, 1237
PflMI CCANNNNNTGG 1 cut(s) 872
PkrI GCNGC 2 cut(s) 466, 1297
PleI GAGTC 3 cut(s) 137, 229, 1327
PpsI GAGTC 3 cut(s) 137, 229, 1327
PshBI ATTAAT 1 cut(s) 975
Psp124BI GAGCTC 1 cut(s) 457
Psp1406I AACGTT 1 cut(s) 1372
PspN4I GGNNCC 3 cut(s) 228, 864, 1288
PspPI GGNCC 2 cut(s) 279, 652
PsuI RGATCY 2 cut(s) 526, 862
RsaI GTAC 3 cut(s) 626, 964, 1281
RsaNI GTAC 3 cut(s) 625, 963, 1280
SacI GAGCTC 1 cut(s) 457
SapI GCTCTTC 1 cut(s) 1305
SaqAI TTAA 4 cut(s) 552, 975, 1338, 1352
SatI GCNGC 2 cut(s) 465, 1296
Sau3AI GATC 3 cut(s) 271, 526, 862
Sau96I GGNCC 2 cut(s) 279, 652
ScaI AGTACT 1 cut(s) 626
SchI GAGTC 3 cut(s) 137, 229, 1328
ScrFI CCNGG 1 cut(s) 101
SduI GDGCHC 6 cut(s) 67, 195, 222, 422, 457, 1291
SfaNI GCATC 5 cut(s) 399, 1003, 1045, 1050, 1128
SfuI TTCGAA 2 cut(s) 522, 574
SinI GGWCC 1 cut(s) 279
SphI GCATGC 1 cut(s) 942
Sse9I AATT 9 cut(s) 246, 304, 617, 763, 834, 870, 1030, 1120, 1179
SsiI CCGC 4 cut(s) 482, 1016, 1082, 1295
SspI AATATT 2 cut(s) 1215, 1412
SspMI CTAG 2 cut(s) 159, 813
SstI GAGCTC 1 cut(s) 457
StyD4I CCNGG 1 cut(s) 99
StyI CCWWGG 3 cut(s) 222, 376, 812
TaaI ACNGT 4 cut(s) 476, 500, 772, 924
TaiI ACGT 3 cut(s) 57, 126, 1375
TaqI TCGA 3 cut(s) 270, 522, 574
TaqII GACCGA 1 cut(s) 1215
TasI AATT 9 cut(s) 246, 304, 617, 763, 834, 870, 1030, 1120, 1179
TatI WGTACW 2 cut(s) 624, 1279
TauI GCSGC 1 cut(s) 1298
TfiI GAWTC 4 cut(s) 347, 678, 1108, 1237
Tru1I TTAA 4 cut(s) 552, 975, 1338, 1352
Tru9I TTAA 4 cut(s) 552, 975, 1338, 1352
TscAI CASTG 4 cut(s) 281, 345, 654, 900
TseI GCWGC 1 cut(s) 464
TspGWI ACGGA 1 cut(s) 357
TspRI CASTG 4 cut(s) 281, 345, 654, 900
Van91I CCANNNNNTGG 1 cut(s) 872
VpaK11BI GGWCC 1 cut(s) 279
VspI ATTAAT 1 cut(s) 975
XapI RAATTY 4 cut(s) 246, 304, 617, 834
XceI RCATGY 1 cut(s) 942
XmaJI CCTAGG 1 cut(s) 812
XspI CTAG 2 cut(s) 159, 813
ZrmI AGTACT 1 cut(s) 626
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.