Rmu_sc0006940.1_g000002

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006940.1
OG0007613
Physical Location & Seq
Reverse (-)
5895 .. 10676
4782 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1506 bp
atgcgacagtttgttgatgacaaattcaaaggccttagaatcgctataaaacccagacaaatgtctcatagcatcatatttcacttcttaattgttcgttatttctttctaaagacaatggctcatatccaaaagcttgtctcagttttttcacttcaactcctgcttgttctgtttgccttggactccactacctatgcactgcaagttgggttctaccggaaaacctgtccaaatttagaggctattgtccatgcgactacttataactacatatctcgggcaccaactcttgctgctcccttgttaagaatgcatttccatgattgttttgttaggggttgtgatggttctgtgctattgaaatcaacagcaaacaaacaagctgagagagatgcaatccccaacctaagcttaagagggttccaagtcatagatgctgtaaaatctgcagtagaaaagaagtgccctggtgttgtttcttgtgctgatatcttggccctagtagctcgcgactcagtattaatgcttcatggtccattttgggaagttcctacaggacgaagagatggaagagtgtctatagcctcggaggccttgacaaacttaccacctccttttgctaacatagctcagctcaaaggaatgtttgcttcaaagggtctaactgttaaagacctagtggtcctatcaggaggacacaccattgggacatctcactgctcatcattctcgaatcgtatatacaatttcaccggtaaaggtgacacagaccccaaattggaccagaattacgtagctcagttgaagatcaaatgtaagccgggggatgccaacacacttgttgagatggaccctggaagcttcaaaacatttgatgaagattactacactctagtgaccaaaagaagaggacttttccaatctgattcagctcttcttgatgacatggagacgaaagcctatgtgacaacccaagccatcactcatggattgacctttgcaaaagattttgctgcatcgatggtgaaaatgggtaacattggagtcctcactggaaaaaatgctacgcagtggctcggttacttggggctggatgggtggcggctcgcctctttcttctcttctacttggtggcgacggcgaatggtttcatcagtgccccatgatggcggaaatctaggttcagatccgaacggggacattttggaagtgatggatggctgtgatcgagcaatctctgtgggtgtggtgagtgatcccgggggctatgctagatcgagaacaggaaatctaggttcagatccgaacggggacattttggaagtgatggatggctgtgatcgagcaatctctgtgggtgtggtgagtgatcccgggggctatgctagatcgagaacaggcctgcatttggagtggatgggctgcatgggccttgatttggtctgtgggctggattacccttctgctatggggctggatgaattgggtctctatggcccatag

Protein Analysis

501

Amino Acids

54.73

Weight (kDa)

8.2

Isoelectric Point (pI)

31.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 87 - 326 5.9e-86 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 267
AasI GACNNNNNNGTC 1 cut(s) 683
AccB1I GGYRCC 1 cut(s) 283
AccII CGCG 1 cut(s) 513
AciI CCGC 2 cut(s) 1105, 1173
AclWI GGATC 4 cut(s) 1184, 1253, 1298, 1367
AcsI RAATTY 2 cut(s) 23, 235
AfiI CCNNNNNNNGG 4 cut(s) 781, 1169, 1411, 1441
AflII CTTAAG 1 cut(s) 415
AgeI ACCGGT 1 cut(s) 755
AgsI TTSAA 6 cut(s) 28, 158, 364, 657, 808, 868
AjnI CCWGG 2 cut(s) 469, 856
AleI CACNNNNGTG 1 cut(s) 896
AluBI AGCT 9 cut(s) 136, 386, 414, 509, 632, 637, 800, 864, 935
AluI AGCT 9 cut(s) 136, 386, 414, 509, 632, 637, 800, 864, 935
Alw26I GTCTC 4 cut(s) 69, 145, 947, 1496
AlwI GGATC 4 cut(s) 1184, 1253, 1298, 1367
Ama87I CYCGRG 3 cut(s) 279, 1262, 1376
AoxI GGCC 6 cut(s) 31, 498, 594, 1402, 1432, 1498
ApeKI GCWGC 3 cut(s) 296, 1016, 1425
ApoI RAATTY 2 cut(s) 23, 235
AseI ATTAAT 1 cut(s) 524
AsiGI ACCGGT 1 cut(s) 755
Asp700I GAANNNNTTC 1 cut(s) 1150
AspS9I GGNCC 7 cut(s) 499, 536, 685, 784, 853, 1432, 1499
AsuC2I CCSGG 5 cut(s) 825, 1263, 1264, 1377, 1378
AsuHPI GGTGA 5 cut(s) 745, 776, 1039, 1264, 1378
AvaI CYCGRG 3 cut(s) 279, 1262, 1376
AvaII GGWCC 4 cut(s) 536, 685, 784, 853
BaeGI GKGCMC 3 cut(s) 286, 470, 1164
BanI GGYRCC 1 cut(s) 283
BarI GAAGNNNNNNTAC 2 cut(s) 513, 545
BbvI GCAGC 3 cut(s) 283, 1003, 1412
BceAI ACGGC 1 cut(s) 1157
BciT130I CCWGG 2 cut(s) 471, 858
BcnI CCSGG 5 cut(s) 825, 1263, 1264, 1377, 1378
BcoDI GTCTC 4 cut(s) 69, 145, 947, 1496
BfaI CTAG 7 cut(s) 503, 680, 896, 1181, 1275, 1295, 1389
BfmI CTRYAG 3 cut(s) 450, 555, 582
BfrI CTTAAG 1 cut(s) 415
BglI GCCNNNNNGGC 1 cut(s) 593
BisI GCNGC 4 cut(s) 297, 1017, 1106, 1426
BlpI GCTNAGC 1 cut(s) 633
BlsI GCNGC 4 cut(s) 298, 1018, 1107, 1427
Bme1390I CCNGG 7 cut(s) 471, 825, 858, 1263, 1264, 1377, 1378
Bme18I GGWCC 4 cut(s) 536, 685, 784, 853
BmeT110I CYCGRG 3 cut(s) 279, 1262, 1376
BmgT120I GGNCC 7 cut(s) 499, 536, 685, 784, 853, 1432, 1499
BmiI GGNNCC 3 cut(s) 285, 425, 855
BmrFI CCNGG 7 cut(s) 471, 825, 858, 1263, 1264, 1377, 1378
BmsI GCATC 5 cut(s) 81, 385, 427, 820, 1028
BoxI GACNNNNGTC 1 cut(s) 61
Bpu10I CCTNAGC 1 cut(s) 410
Bpu1102I GCTNAGC 1 cut(s) 633
BpuMI CCSGG 5 cut(s) 825, 1263, 1264, 1377, 1378
Bsa29I ATCGAT 1 cut(s) 1022
BsaAI YACGTR 1 cut(s) 796
BsaI GGTCTC 1 cut(s) 1496
BsaJI CCNNGG 9 cut(s) 180, 469, 588, 824, 856, 1262, 1263, 1376, 1377
BsaWI WCCGGW 2 cut(s) 219, 755
BsaXI ACNNNNNCTCC 2 cut(s) 144, 174
Bsc4I CCNNNNNNNGG 4 cut(s) 781, 1169, 1411, 1441
Bse118I RCCGGY 1 cut(s) 755
Bse1I ACTGG 1 cut(s) 1060
BseBI CCWGG 2 cut(s) 471, 858
BseCI ATCGAT 1 cut(s) 1022
BseDI CCNNGG 9 cut(s) 180, 469, 588, 824, 856, 1262, 1263, 1376, 1377
BseGI GGATG 6 cut(s) 835, 1102, 1225, 1339, 1425, 1486
BseLI CCNNNNNNNGG 4 cut(s) 781, 1169, 1411, 1441
BseMII CTCAG 5 cut(s) 156, 378, 531, 647, 815
BseNI ACTGG 1 cut(s) 1060
BseSI GKGCMC 3 cut(s) 286, 470, 1164
BseXI GCAGC 3 cut(s) 283, 1003, 1412
Bsh1236I CGCG 1 cut(s) 513
BshFI GGCC 6 cut(s) 33, 500, 596, 1404, 1434, 1500
BshNI GGYRCC 1 cut(s) 283
BshTI ACCGGT 1 cut(s) 755
BshVI ATCGAT 1 cut(s) 1022
BsiHKCI CYCGRG 3 cut(s) 279, 1262, 1376
BsiSI CCGG 5 cut(s) 220, 756, 824, 1263, 1377
BslFI GGGAC 3 cut(s) 724, 1214, 1328
BslI CCNNNNNNNGG 4 cut(s) 781, 1169, 1411, 1441
BsmAI GTCTC 4 cut(s) 69, 145, 947, 1496
BsmBI CGTCTC 1 cut(s) 947
BsmFI GGGAC 3 cut(s) 724, 1214, 1328
BsmI GAATGC 1 cut(s) 318
BsnI GGCC 6 cut(s) 33, 500, 596, 1404, 1434, 1500
Bso31I GGTCTC 1 cut(s) 1496
BsoBI CYCGRG 3 cut(s) 279, 1262, 1376
Bsp1286I GDGCHC 3 cut(s) 286, 470, 1164
Bsp143I GATC 9 cut(s) 810, 1189, 1228, 1258, 1277, 1303, 1342, 1372, 1391
Bsp1720I GCTNAGC 1 cut(s) 633
Bsp68I TCGCGA 1 cut(s) 513
BspACI CCGC 2 cut(s) 1105, 1173
BspANI GGCC 6 cut(s) 33, 500, 596, 1404, 1434, 1500
BspCNI CTCAG 5 cut(s) 155, 379, 530, 646, 814
BspDI ATCGAT 1 cut(s) 1022
BspFNI CGCG 1 cut(s) 513
BspLI GGNNCC 3 cut(s) 285, 425, 855
BspMAI CTGCAG 1 cut(s) 454
BspPI GGATC 4 cut(s) 1184, 1253, 1298, 1367
BspQI GCTCTTC 1 cut(s) 942
BspT107I GGYRCC 1 cut(s) 283
BspTI CTTAAG 1 cut(s) 415
BspTNI GGTCTC 1 cut(s) 1496
BsrFI RCCGGY 1 cut(s) 755
BsrI ACTGG 1 cut(s) 1060
BssAI RCCGGY 1 cut(s) 755
BssECI CCNNGG 9 cut(s) 180, 469, 588, 824, 856, 1262, 1263, 1376, 1377
BssMI GATC 9 cut(s) 810, 1189, 1228, 1258, 1277, 1303, 1342, 1372, 1391
BssT1I CCWWGG 1 cut(s) 180
Bst2UI CCWGG 2 cut(s) 471, 858
Bst4CI ACNGT 2 cut(s) 9, 670
Bst6I CTCTTC 5 cut(s) 559, 568, 904, 942, 1129
BstAFI CTTAAG 1 cut(s) 415
BstBAI YACGTR 1 cut(s) 796
BstC8I GCNNGC 3 cut(s) 511, 1110, 1406
BstDEI CTNAG 7 cut(s) 35, 142, 387, 410, 517, 633, 801
BstF5I GGATG 6 cut(s) 835, 1102, 1225, 1339, 1425, 1486
BstFNI CGCG 1 cut(s) 513
BstKTI GATC 9 cut(s) 813, 1192, 1231, 1261, 1280, 1306, 1345, 1375, 1394
BstMAI GTCTC 4 cut(s) 69, 145, 947, 1496
BstMBI GATC 9 cut(s) 810, 1189, 1228, 1258, 1277, 1303, 1342, 1372, 1391
BstMWI GCNNNNNNNGC 4 cut(s) 506, 593, 629, 1431
BstNI CCWGG 2 cut(s) 471, 858
BstPAI GACNNNNGTC 1 cut(s) 61
BstSCI CCNGG 7 cut(s) 469, 823, 856, 1261, 1262, 1375, 1376
BstSFI CTRYAG 3 cut(s) 450, 555, 582
BstSLI GKGCMC 3 cut(s) 286, 470, 1164
BstSNI TACGTA 1 cut(s) 796
BstUI CGCG 1 cut(s) 513
BstV1I GCAGC 3 cut(s) 283, 1003, 1412
BstX2I RGATCY 2 cut(s) 1189, 1303
BstYI RGATCY 2 cut(s) 1189, 1303
Bsu15I ATCGAT 1 cut(s) 1022
BsuRI GGCC 6 cut(s) 33, 500, 596, 1404, 1434, 1500
BsuTUI ATCGAT 1 cut(s) 1022
BtsCI GGATG 6 cut(s) 835, 1102, 1225, 1339, 1425, 1486
BtsI GCAGTG 3 cut(s) 200, 718, 1079
BtsIMutI CAGTG 5 cut(s) 200, 718, 1053, 1079, 1164
BtuMI TCGCGA 1 cut(s) 513
Cac8I GCNNGC 3 cut(s) 511, 1110, 1406
Cfr10I RCCGGY 1 cut(s) 755
Cfr13I GGNCC 7 cut(s) 499, 536, 685, 784, 853, 1432, 1499
Cfr9I CCCGGG 2 cut(s) 1262, 1376
ClaI ATCGAT 1 cut(s) 1022
CspAI ACCGGT 1 cut(s) 755
CspCI CAANNNNNGTGG 4 cut(s) 1224, 1259, 1338, 1373
CviAII CATG 7 cut(s) 254, 323, 533, 949, 989, 1166, 1429
DdeI CTNAG 7 cut(s) 35, 142, 387, 410, 517, 633, 801
DpnI GATC 9 cut(s) 812, 1191, 1230, 1260, 1279, 1305, 1344, 1374, 1393
DpnII GATC 9 cut(s) 810, 1189, 1228, 1258, 1277, 1303, 1342, 1372, 1391
DrdI GACNNNNNNGTC 1 cut(s) 683
DseDI GACNNNNNNGTC 1 cut(s) 683
Eam1104I CTCTTC 5 cut(s) 559, 568, 904, 942, 1129
EarI CTCTTC 5 cut(s) 559, 568, 904, 942, 1129
EciI GGCGGA 1 cut(s) 1188
Eco105I TACGTA 1 cut(s) 796
Eco130I CCWWGG 1 cut(s) 180
Eco147I AGGCCT 3 cut(s) 33, 596, 1404
Eco31I GGTCTC 1 cut(s) 1496
Eco32I GATATC 1 cut(s) 493
Eco47I GGWCC 4 cut(s) 536, 685, 784, 853
Eco88I CYCGRG 3 cut(s) 279, 1262, 1376
EcoRII CCWGG 2 cut(s) 469, 856
EcoRV GATATC 1 cut(s) 493
EcoT14I CCWWGG 1 cut(s) 180
EcoT22I ATGCAT 1 cut(s) 318
ErhI CCWWGG 1 cut(s) 180
Esp3I CGTCTC 1 cut(s) 947
FaeI CATG 7 cut(s) 257, 326, 536, 952, 992, 1169, 1432
FaqI GGGAC 3 cut(s) 724, 1214, 1328
FatI CATG 7 cut(s) 253, 322, 532, 948, 988, 1165, 1428
Fnu4HI GCNGC 4 cut(s) 297, 1017, 1106, 1426
FokI GGATG 6 cut(s) 842, 1109, 1232, 1346, 1432, 1493
Fsp4HI GCNGC 4 cut(s) 297, 1017, 1106, 1426
FspBI CTAG 7 cut(s) 503, 680, 896, 1181, 1275, 1295, 1389
GluI GCNGC 4 cut(s) 297, 1017, 1106, 1426
HaeIII GGCC 6 cut(s) 33, 500, 596, 1404, 1434, 1500
HapII CCGG 5 cut(s) 220, 756, 824, 1263, 1377
Hin1II CATG 7 cut(s) 257, 326, 536, 952, 992, 1169, 1432
HindIII AAGCTT 3 cut(s) 134, 412, 862
HinfI GANTC 6 cut(s) 39, 185, 515, 736, 929, 1047
HpaII CCGG 5 cut(s) 220, 756, 824, 1263, 1377
HphI GGTGA 5 cut(s) 745, 776, 1039, 1264, 1378
Hpy188I TCNGA 6 cut(s) 592, 928, 1189, 1194, 1303, 1308
Hpy188III TCNNGA 6 cut(s) 512, 693, 733, 941, 1281, 1395
Hpy99I CGWCG 1 cut(s) 1143
HpyAV CCTTC 1 cut(s) 1473
HpyCH4III ACNGT 2 cut(s) 9, 670
HpyCH4IV ACGT 1 cut(s) 795
HpyCH4V TGCA 9 cut(s) 200, 205, 316, 398, 452, 1004, 1019, 1408, 1428
HpyF10VI GCNNNNNNNGC 4 cut(s) 506, 593, 629, 1431
HpyF3I CTNAG 7 cut(s) 35, 142, 387, 410, 517, 633, 801
HpySE526I ACGT 1 cut(s) 795
Hsp92II CATG 7 cut(s) 257, 326, 536, 952, 992, 1169, 1432
Kzo9I GATC 9 cut(s) 810, 1189, 1228, 1258, 1277, 1303, 1342, 1372, 1391
LguI GCTCTTC 1 cut(s) 942
LmnI GCTCC 1 cut(s) 304
Lsp1109I GCAGC 3 cut(s) 283, 1003, 1412
LweI GCATC 5 cut(s) 81, 385, 427, 820, 1028
MaeI CTAG 7 cut(s) 503, 680, 896, 1181, 1275, 1295, 1389
MaeII ACGT 1 cut(s) 795
MaeIII GTNAC 5 cut(s) 764, 898, 967, 1037, 1082
MalI GATC 9 cut(s) 812, 1191, 1230, 1260, 1279, 1305, 1344, 1374, 1393
MboI GATC 9 cut(s) 810, 1189, 1228, 1258, 1277, 1303, 1342, 1372, 1391
MboII GAAGA 8 cut(s) 576, 585, 820, 893, 921, 929, 1111, 1116
MflI RGATCY 2 cut(s) 1189, 1303
MhlI GDGCHC 3 cut(s) 286, 470, 1164
MluCI AATT 7 cut(s) 23, 90, 235, 748, 779, 790, 1484
MlyI GAGTC 3 cut(s) 179, 509, 1056
MnlI CCTC 9 cut(s) 235, 413, 586, 598, 624, 689, 905, 1061, 1123
Mph1103I ATGCAT 1 cut(s) 318
MroXI GAANNNNTTC 1 cut(s) 1150
MseI TTAA 5 cut(s) 89, 308, 416, 524, 672
MslI CAYNNNNRTG 2 cut(s) 321, 896
MspCI CTTAAG 1 cut(s) 415
MspI CCGG 5 cut(s) 220, 756, 824, 1263, 1377
MspR9I CCNGG 7 cut(s) 471, 825, 858, 1263, 1264, 1377, 1378
Mva1269I GAATGC 1 cut(s) 318
MvaI CCWGG 2 cut(s) 471, 858
MvnI CGCG 1 cut(s) 513
MwoI GCNNNNNNNGC 4 cut(s) 506, 593, 629, 1431
NciI CCSGG 5 cut(s) 825, 1263, 1264, 1377, 1378
NdeII GATC 9 cut(s) 810, 1189, 1228, 1258, 1277, 1303, 1342, 1372, 1391
NlaIII CATG 7 cut(s) 257, 326, 536, 952, 992, 1169, 1432
NlaIV GGNNCC 3 cut(s) 285, 425, 855
NmuCI GTSAC 3 cut(s) 764, 898, 967
NruI TCGCGA 1 cut(s) 513
NsiI ATGCAT 1 cut(s) 318
OliI CACNNNNGTG 1 cut(s) 896
PceI AGGCCT 3 cut(s) 33, 596, 1404
PciSI GCTCTTC 1 cut(s) 942
PctI GAATGC 1 cut(s) 318
PdmI GAANNNNTTC 1 cut(s) 1150
PfeI GAWTC 3 cut(s) 39, 736, 929
PinAI ACCGGT 1 cut(s) 755
PkrI GCNGC 4 cut(s) 298, 1018, 1107, 1427
PleI GAGTC 3 cut(s) 179, 509, 1055
PpsI GAGTC 3 cut(s) 179, 509, 1055
Ppu21I YACGTR 1 cut(s) 796
PshAI GACNNNNGTC 1 cut(s) 61
PshBI ATTAAT 1 cut(s) 524
PsiI TTATAA 1 cut(s) 267
Psp6I CCWGG 2 cut(s) 469, 856
PspGI CCWGG 2 cut(s) 469, 856
PspN4I GGNNCC 3 cut(s) 285, 425, 855
PspPI GGNCC 7 cut(s) 499, 536, 685, 784, 853, 1432, 1499
PstI CTGCAG 1 cut(s) 454
PsuI RGATCY 2 cut(s) 1189, 1303
RruI TCGCGA 1 cut(s) 513
RseI CAYNNNNRTG 2 cut(s) 321, 896
SapI GCTCTTC 1 cut(s) 942
SaqAI TTAA 5 cut(s) 89, 308, 416, 524, 672
SatI GCNGC 4 cut(s) 297, 1017, 1106, 1426
Sau3AI GATC 9 cut(s) 810, 1189, 1228, 1258, 1277, 1303, 1342, 1372, 1391
Sau96I GGNCC 7 cut(s) 499, 536, 685, 784, 853, 1432, 1499
SchI GAGTC 3 cut(s) 179, 509, 1056
ScrFI CCNGG 7 cut(s) 471, 825, 858, 1263, 1264, 1377, 1378
SduI GDGCHC 3 cut(s) 286, 470, 1164
SfaNI GCATC 5 cut(s) 81, 385, 427, 820, 1028
SfcI CTRYAG 3 cut(s) 450, 555, 582
SinI GGWCC 4 cut(s) 536, 685, 784, 853
SmaI CCCGGG 2 cut(s) 1264, 1378
SmiMI CAYNNNNRTG 2 cut(s) 321, 896
SmlI CTYRAG 1 cut(s) 415
SmoI CTYRAG 1 cut(s) 415
SnaBI TACGTA 1 cut(s) 796
Sse9I AATT 7 cut(s) 23, 90, 235, 748, 779, 790, 1484
SseBI AGGCCT 3 cut(s) 33, 596, 1404
SsiI CCGC 2 cut(s) 1105, 1173
SspMI CTAG 7 cut(s) 503, 680, 896, 1181, 1275, 1295, 1389
StuI AGGCCT 3 cut(s) 33, 596, 1404
StyD4I CCNGG 7 cut(s) 469, 823, 856, 1261, 1262, 1375, 1376
StyI CCWWGG 1 cut(s) 180
TaaI ACNGT 2 cut(s) 9, 670
TaiI ACGT 1 cut(s) 798
TaqI TCGA 6 cut(s) 734, 1022, 1231, 1280, 1345, 1394
TasI AATT 7 cut(s) 23, 90, 235, 748, 779, 790, 1484
TauI GCSGC 1 cut(s) 1108
TfiI GAWTC 3 cut(s) 39, 736, 929
Tru1I TTAA 5 cut(s) 89, 308, 416, 524, 672
Tru9I TTAA 5 cut(s) 89, 308, 416, 524, 672
TscAI CASTG 5 cut(s) 207, 725, 1060, 1079, 1164
TseFI GTSAC 3 cut(s) 764, 898, 967
TseI GCWGC 3 cut(s) 296, 1016, 1425
Tsp45I GTSAC 3 cut(s) 764, 898, 967
TspDTI ATGAA 4 cut(s) 521, 894, 1143, 1497
TspMI CCCGGG 2 cut(s) 1262, 1376
TspRI CASTG 5 cut(s) 207, 725, 1060, 1079, 1164
Vha464I CTTAAG 1 cut(s) 415
VpaK11BI GGWCC 4 cut(s) 536, 685, 784, 853
VspI ATTAAT 1 cut(s) 524
XapI RAATTY 2 cut(s) 23, 235
XmaI CCCGGG 2 cut(s) 1262, 1376
XmnI GAANNNNTTC 1 cut(s) 1150
XspI CTAG 7 cut(s) 503, 680, 896, 1181, 1275, 1295, 1389
Zsp2I ATGCAT 1 cut(s) 318
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.