Rmu_sc0007032.1_g000002

Nucleolar GTP-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007032.1
OG0005154
Physical Location & Seq
Forward (+)
14224 .. 21708
7485 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1344 bp
atgagcagggcttgcagtctcttccaactatggcacagtcctccagacaccagattactactctcaatcaccaaagggccgtacttgatacctagtgccagaagttatccaggtctgtgcttctgtaagggtttacagacttctacataccaagttgtcaggggaagctatgtacccacctcccagattaaacaagaaagtaaaactgaggaaaaatctccagaaaaacttgaaggtgttggtgcatttcagaagctaccaatggtaatgccatccgttgacattctttattcagcactaaggaaggctaagaaaattgcaccaacaaaaggcattgccaatattgcaaagagagaaagaaatagaggtgcaaagcaacttgatgcattgatgaaagaaatagcagttcctttaaggacttattcggagaactttcccaataagaagtatcttcacccttacgagcgatctcttattgaattaactctcggggatggaaattatgaacaggtattgggaaaggtggatgctctgaggaaaaaggttgtttctgttggaaaggaacatgcatctctatgtgctaaggttgatatctcgtcaacgtcgaagaaggaagcagagacaagactgagtgagggtttaaagaaagttgaggagacatatattcgtcaaggaaaatatgttgatgatttgttacacatagccaagacattgcgagcaatgccggtagttgatctagaaacaccaacactttgtcttgttggagctcctaatgttgggaagtcatctttggttcgtatactctccacagggaagcctgaggtctgcaactaccctttcacaacaagaggaatcctaatgggtcatatcattttaaaccatgagacttttcaggtgactgatactccgggcctgctgaagagatgtgatgaggacagaaataatttggaaaaattgacacttgctgtcctctcacatctgccaactgcagtactgtatgtccatgatctttctggagaatgtgggacctcacctactgatcagtttgtcatatacaatgaaataaaggagaaattcggtgaccatctgtggcttgatgttgtgtccaaatgcgatctattgcaagagtctccagtgctatttgctactgataatggcgatgataatgatcttgacctggcaaggtaccggaaattgggccctgagggagctcttcatgtgtcagtgaaaaatgaagtagggctctcagagttaaaaagaagagtgcatgaactgctgaatacccaaatgaccaggatccaaagtctggaaaccaaccaagaaactcttcaagttcttacctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
MMR_HSR1 NOG1

Protein Analysis

447

Amino Acids

49.92

Weight (kDa)

8.65

Isoelectric Point (pI)

42.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NOG1_N PF17835 83 - 245 2.4e-45 NOG1 N-terminal helical domain
FeoB_N PF02421 250 - 307 5.4e-09 Ferrous iron transport protein B
MMR_HSR1 PF01926 251 - 347 4.5e-16 50S ribosome-binding GTPase
NOG1 PF06858 316 - 372 2.7e-17 Nucleolar GTP-binding protein 1 (NOG1)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1185
AccB1I GGYRCC 1 cut(s) 1185
AccB7I CCANNNNNTGG 1 cut(s) 1306
AccI GTMKAC 1 cut(s) 799
AclWI GGATC 2 cut(s) 1291, 1304
AcsI RAATTY 1 cut(s) 1073
AcuI CTGAAG 1 cut(s) 938
AfaI GTAC 4 cut(s) 83, 174, 993, 1187
AfiI CCNNNNNNNGG 4 cut(s) 329, 776, 1195, 1306
AgsI TTSAA 3 cut(s) 233, 479, 1331
AjnI CCWGG 3 cut(s) 109, 1176, 1292
AjuI GAANNNNNNNTTGG 4 cut(s) 773, 805, 1311, 1343
AluBI AGCT 4 cut(s) 168, 256, 767, 1211
AluI AGCT 4 cut(s) 168, 256, 767, 1211
Alw21I GWGCWC 2 cut(s) 769, 1213
Alw26I GTCTC 5 cut(s) 23, 614, 650, 878, 1134
AlwI GGATC 2 cut(s) 1291, 1304
Ama87I CYCGRG 1 cut(s) 488
AoxI GGCC 3 cut(s) 77, 910, 1198
ApaI GGGCCC 1 cut(s) 1202
ApoI RAATTY 1 cut(s) 1073
Asp700I GAANNNNTTC 1 cut(s) 1326
Asp718I GGTACC 1 cut(s) 1185
AspS9I GGNCC 5 cut(s) 77, 910, 1026, 1198, 1199
AsuC2I CCSGG 1 cut(s) 909
AsuHPI GGTGA 5 cut(s) 61, 446, 907, 1023, 1091
AvaI CYCGRG 1 cut(s) 488
AvaII GGWCC 1 cut(s) 1026
AxyI CCTNAGG 2 cut(s) 819, 1203
BaeGI GKGCMC 1 cut(s) 1202
BamHI GGATCC 1 cut(s) 1296
BanI GGYRCC 1 cut(s) 1185
BanII GRGCYC 4 cut(s) 769, 1202, 1213, 1245
Bbv12I GWGCWC 2 cut(s) 769, 1213
BccI CCATC 3 cut(s) 280, 488, 1092
BceAI ACGGC 1 cut(s) 64
BciT130I CCWGG 3 cut(s) 111, 1178, 1294
BclI TGATCA 1 cut(s) 1039
BcnI CCSGG 1 cut(s) 909
BcoDI GTCTC 5 cut(s) 23, 614, 650, 878, 1134
BfaI CTAG 2 cut(s) 93, 737
BfmI CTRYAG 1 cut(s) 987
BmcAI AGTACT 1 cut(s) 993
Bme1390I CCNGG 4 cut(s) 111, 909, 1178, 1294
Bme18I GGWCC 1 cut(s) 1026
BmeT110I CYCGRG 1 cut(s) 488
BmgT120I GGNCC 5 cut(s) 77, 910, 1026, 1198, 1199
BmiI GGNNCC 4 cut(s) 1027, 1187, 1200, 1298
BmrFI CCNGG 4 cut(s) 111, 909, 1178, 1294
BmsI GCATC 3 cut(s) 373, 517, 578
BpmI CTGGAG 4 cut(s) 27, 204, 1035, 1116
Bpu10I CCTNAGC 1 cut(s) 582
BpuMI CCSGG 1 cut(s) 909
BsaBI GATNNNNATC 1 cut(s) 1167
BsaWI WCCGGW 1 cut(s) 1188
BsaXI ACNNNNNCTCC 2 cut(s) 889, 919
Bsc4I CCNNNNNNNGG 4 cut(s) 329, 776, 1195, 1306
Bse118I RCCGGY 1 cut(s) 724
Bse1I ACTGG 1 cut(s) 1133
Bse21I CCTNAGG 2 cut(s) 819, 1203
Bse3DI GCAATG 3 cut(s) 333, 710, 726
Bse8I GATNNNNATC 1 cut(s) 1167
BseBI CCWGG 3 cut(s) 111, 1178, 1294
BseGI GGATG 3 cut(s) 272, 499, 532
BseJI GATNNNNATC 1 cut(s) 1167
BseLI CCNNNNNNNGG 4 cut(s) 329, 776, 1195, 1306
BseMI GCAATG 3 cut(s) 333, 710, 726
BseMII CTCAG 6 cut(s) 198, 524, 620, 810, 1194, 1260
BseNI ACTGG 1 cut(s) 1133
BseRI GAGGAG 1 cut(s) 668
BseSI GKGCMC 1 cut(s) 1202
BshFI GGCC 3 cut(s) 79, 912, 1200
BshNI GGYRCC 1 cut(s) 1185
BsiHKAI GWGCWC 2 cut(s) 769, 1213
BsiHKCI CYCGRG 1 cut(s) 488
BsiSI CCGG 3 cut(s) 725, 908, 1189
BslFI GGGAC 1 cut(s) 1039
BslI CCNNNNNNNGG 4 cut(s) 329, 776, 1195, 1306
BsmAI GTCTC 5 cut(s) 23, 614, 650, 878, 1134
BsmFI GGGAC 1 cut(s) 1039
BsnI GGCC 3 cut(s) 79, 912, 1200
BsoBI CYCGRG 1 cut(s) 488
Bsp120I GGGCCC 1 cut(s) 1198
Bsp1286I GDGCHC 4 cut(s) 769, 1202, 1213, 1245
Bsp143I GATC 7 cut(s) 467, 733, 1006, 1039, 1114, 1168, 1296
BspANI GGCC 3 cut(s) 79, 912, 1200
BspCNI CTCAG 6 cut(s) 199, 525, 621, 811, 1195, 1259
BspLI GGNNCC 4 cut(s) 1027, 1187, 1200, 1298
BspMAI CTGCAG 1 cut(s) 991
BspPI GGATC 2 cut(s) 1291, 1304
BspQI GCTCTTC 1 cut(s) 1218
BspT107I GGYRCC 1 cut(s) 1185
BsrDI GCAATG 3 cut(s) 333, 710, 726
BsrFI RCCGGY 1 cut(s) 724
BsrI ACTGG 1 cut(s) 1133
BssAI RCCGGY 1 cut(s) 724
BssMI GATC 7 cut(s) 467, 733, 1006, 1039, 1114, 1168, 1296
BssNAI GTATAC 1 cut(s) 800
Bst1107I GTATAC 1 cut(s) 800
Bst2UI CCWGG 3 cut(s) 111, 1178, 1294
Bst4CI ACNGT 2 cut(s) 38, 996
Bst6I CTCTTC 5 cut(s) 26, 914, 1218, 1255, 1332
BstAPI GCANNNNNTGC 2 cut(s) 12, 1273
BstC8I GCNNGC 3 cut(s) 13, 717, 914
BstDEI CTNAG 9 cut(s) 207, 299, 309, 533, 582, 629, 819, 1203, 1246
BstEII GGTNACC 1 cut(s) 1079
BstF5I GGATG 3 cut(s) 272, 499, 532
BstKTI GATC 7 cut(s) 470, 736, 1009, 1042, 1117, 1171, 1299
BstMAI GTCTC 5 cut(s) 23, 614, 650, 878, 1134
BstMBI GATC 7 cut(s) 467, 733, 1006, 1039, 1114, 1168, 1296
BstMWI GCNNNNNNNGC 4 cut(s) 12, 344, 721, 1273
BstNI CCWGG 3 cut(s) 111, 1178, 1294
BstNSI RCATGY 1 cut(s) 569
BstPI GGTNACC 1 cut(s) 1079
BstSCI CCNGG 4 cut(s) 109, 907, 1176, 1292
BstSFI CTRYAG 1 cut(s) 987
BstSLI GKGCMC 1 cut(s) 1202
BstX2I RGATCY 1 cut(s) 1296
BstYI RGATCY 1 cut(s) 1296
BstZ17I GTATAC 1 cut(s) 800
Bsu36I CCTNAGG 2 cut(s) 819, 1203
BsuRI GGCC 3 cut(s) 79, 912, 1200
BtgZI GCGATG 1 cut(s) 1173
BtsCI GGATG 3 cut(s) 272, 499, 532
BtsIMutI CAGTG 2 cut(s) 1140, 1230
Cac8I GCNNGC 3 cut(s) 13, 717, 914
Cfr10I RCCGGY 1 cut(s) 724
Cfr13I GGNCC 5 cut(s) 77, 910, 1026, 1198, 1199
Csp6I GTAC 4 cut(s) 82, 173, 992, 1186
CviAII CATG 5 cut(s) 566, 881, 1004, 1217, 1268
CviQI GTAC 4 cut(s) 82, 173, 992, 1186
DdeI CTNAG 9 cut(s) 207, 299, 309, 533, 582, 629, 819, 1203, 1246
DpnI GATC 7 cut(s) 469, 735, 1008, 1041, 1116, 1170, 1298
DpnII GATC 7 cut(s) 467, 733, 1006, 1039, 1114, 1168, 1296
DraI TTTAAA 2 cut(s) 642, 876
Eam1104I CTCTTC 5 cut(s) 26, 914, 1218, 1255, 1332
EarI CTCTTC 5 cut(s) 26, 914, 1218, 1255, 1332
Ecl136II GAGCTC 2 cut(s) 767, 1211
Eco24I GRGCYC 4 cut(s) 769, 1202, 1213, 1245
Eco32I GATATC 1 cut(s) 592
Eco47I GGWCC 1 cut(s) 1026
Eco53kI GAGCTC 2 cut(s) 767, 1211
Eco57I CTGAAG 1 cut(s) 938
Eco81I CCTNAGG 2 cut(s) 819, 1203
Eco88I CYCGRG 1 cut(s) 488
Eco91I GGTNACC 1 cut(s) 1079
EcoICRI GAGCTC 2 cut(s) 767, 1211
EcoO109I RGGNCCY 2 cut(s) 1026, 1199
EcoO65I GGTNACC 1 cut(s) 1079
EcoRII CCWGG 3 cut(s) 109, 1176, 1292
EcoRV GATATC 1 cut(s) 592
EcoT22I ATGCAT 2 cut(s) 388, 571
EcoT38I GRGCYC 4 cut(s) 769, 1202, 1213, 1245
FaeI CATG 5 cut(s) 569, 884, 1007, 1220, 1271
FalI AAGNNNNNCTT 2 cut(s) 1311, 1343
FaqI GGGAC 1 cut(s) 1039
FatI CATG 5 cut(s) 565, 880, 1003, 1216, 1267
FbaI TGATCA 1 cut(s) 1039
FblI GTMKAC 1 cut(s) 799
FokI GGATG 3 cut(s) 259, 506, 539
FriOI GRGCYC 4 cut(s) 769, 1202, 1213, 1245
FspBI CTAG 2 cut(s) 93, 737
GsuI CTGGAG 4 cut(s) 27, 204, 1035, 1116
HaeIII GGCC 3 cut(s) 79, 912, 1200
HapII CCGG 3 cut(s) 725, 908, 1189
Hin1II CATG 5 cut(s) 569, 884, 1007, 1220, 1271
HincII GTYRAC 2 cut(s) 280, 600
HindII GTYRAC 2 cut(s) 280, 600
HinfI GANTC 2 cut(s) 852, 1127
HpaII CCGG 3 cut(s) 725, 908, 1189
HphI GGTGA 5 cut(s) 61, 446, 907, 1023, 1091
Hpy166II GTNNAC 4 cut(s) 134, 280, 600, 800
Hpy188I TCNGA 4 cut(s) 252, 427, 534, 1249
Hpy188III TCNNGA 6 cut(s) 44, 221, 737, 1014, 1172, 1307
Hpy8I GTNNAC 4 cut(s) 134, 280, 600, 800
Hpy99I CGWCG 1 cut(s) 607
HpyAV CCTTC 3 cut(s) 227, 298, 604
HpyCH4III ACNGT 2 cut(s) 38, 996
HpyCH4IV ACGT 1 cut(s) 602
HpyF10VI GCNNNNNNNGC 4 cut(s) 12, 344, 721, 1273
HpyF3I CTNAG 9 cut(s) 207, 299, 309, 533, 582, 629, 819, 1203, 1246
HpySE526I ACGT 1 cut(s) 602
Hsp92II CATG 5 cut(s) 569, 884, 1007, 1220, 1271
KpnI GGTACC 1 cut(s) 1189
Ksp22I TGATCA 1 cut(s) 1039
Kzo9I GATC 7 cut(s) 467, 733, 1006, 1039, 1114, 1168, 1296
LguI GCTCTTC 1 cut(s) 1218
LmnI GCTCC 3 cut(s) 764, 772, 1208
LweI GCATC 3 cut(s) 373, 517, 578
MaeI CTAG 2 cut(s) 93, 737
MaeII ACGT 1 cut(s) 602
MaeIII GTNAC 3 cut(s) 693, 895, 1079
MalI GATC 7 cut(s) 469, 735, 1008, 1041, 1116, 1170, 1298
MboI GATC 7 cut(s) 467, 733, 1006, 1039, 1114, 1168, 1296
MboII GAAGA 7 cut(s) 13, 443, 619, 931, 1205, 1272, 1319
MflI RGATCY 1 cut(s) 1296
MhlI GDGCHC 4 cut(s) 769, 1202, 1213, 1245
MluCI AATT 7 cut(s) 315, 479, 499, 943, 953, 1073, 1193
MlyI GAGTC 1 cut(s) 1136
MmeI TCCRAC 3 cut(s) 49, 535, 742
Mph1103I ATGCAT 2 cut(s) 388, 571
MroXI GAANNNNTTC 1 cut(s) 1326
MseI TTAA 6 cut(s) 189, 413, 482, 641, 875, 1253
MslI CAYNNNNRTG 1 cut(s) 574
MspI CCGG 3 cut(s) 725, 908, 1189
MspR9I CCNGG 4 cut(s) 111, 909, 1178, 1294
MvaI CCWGG 3 cut(s) 111, 1178, 1294
MwoI GCNNNNNNNGC 4 cut(s) 12, 344, 721, 1273
NciI CCSGG 1 cut(s) 909
NdeII GATC 7 cut(s) 467, 733, 1006, 1039, 1114, 1168, 1296
NlaIII CATG 5 cut(s) 569, 884, 1007, 1220, 1271
NlaIV GGNNCC 4 cut(s) 1027, 1187, 1200, 1298
NmuCI GTSAC 2 cut(s) 895, 1079
NsiI ATGCAT 2 cut(s) 388, 571
NspI RCATGY 1 cut(s) 569
PciSI GCTCTTC 1 cut(s) 1218
PcsI WCGNNNNNNNCGW 1 cut(s) 602
PdmI GAANNNNTTC 1 cut(s) 1326
PfeI GAWTC 1 cut(s) 852
PflMI CCANNNNNTGG 1 cut(s) 1306
PleI GAGTC 1 cut(s) 1135
PpsI GAGTC 1 cut(s) 1135
PpuMI RGGWCCY 1 cut(s) 1026
Psp124BI GAGCTC 2 cut(s) 769, 1213
Psp5II RGGWCCY 1 cut(s) 1026
Psp6I CCWGG 3 cut(s) 109, 1176, 1292
PspEI GGTNACC 1 cut(s) 1079
PspGI CCWGG 3 cut(s) 109, 1176, 1292
PspN4I GGNNCC 4 cut(s) 1027, 1187, 1200, 1298
PspOMI GGGCCC 1 cut(s) 1198
PspPI GGNCC 5 cut(s) 77, 910, 1026, 1198, 1199
PspPPI RGGWCCY 1 cut(s) 1026
PstI CTGCAG 1 cut(s) 991
PsuI RGATCY 1 cut(s) 1296
RsaI GTAC 4 cut(s) 83, 174, 993, 1187
RsaNI GTAC 4 cut(s) 82, 173, 992, 1186
RseI CAYNNNNRTG 1 cut(s) 574
SacI GAGCTC 2 cut(s) 769, 1213
SapI GCTCTTC 1 cut(s) 1218
SaqAI TTAA 6 cut(s) 189, 413, 482, 641, 875, 1253
Sau3AI GATC 7 cut(s) 467, 733, 1006, 1039, 1114, 1168, 1296
Sau96I GGNCC 5 cut(s) 77, 910, 1026, 1198, 1199
ScaI AGTACT 1 cut(s) 993
SchI GAGTC 1 cut(s) 1136
ScrFI CCNGG 4 cut(s) 111, 909, 1178, 1294
SduI GDGCHC 4 cut(s) 769, 1202, 1213, 1245
SfaNI GCATC 3 cut(s) 373, 517, 578
SfcI CTRYAG 1 cut(s) 987
SinI GGWCC 1 cut(s) 1026
SmiMI CAYNNNNRTG 1 cut(s) 574
Sse9I AATT 7 cut(s) 315, 479, 499, 943, 953, 1073, 1193
SspI AATATT 1 cut(s) 343
SspMI CTAG 2 cut(s) 93, 737
SstI GAGCTC 2 cut(s) 769, 1213
StyD4I CCNGG 4 cut(s) 109, 907, 1176, 1292
TaaI ACNGT 2 cut(s) 38, 996
TaiI ACGT 1 cut(s) 605
TaqI TCGA 1 cut(s) 605
TasI AATT 7 cut(s) 315, 479, 499, 943, 953, 1073, 1193
TatI WGTACW 1 cut(s) 991
TfiI GAWTC 1 cut(s) 852
Tru1I TTAA 6 cut(s) 189, 413, 482, 641, 875, 1253
Tru9I TTAA 6 cut(s) 189, 413, 482, 641, 875, 1253
TscAI CASTG 2 cut(s) 1140, 1230
TseFI GTSAC 2 cut(s) 895, 1079
Tsp45I GTSAC 2 cut(s) 895, 1079
TspDTI ATGAA 6 cut(s) 407, 519, 1074, 1205, 1248, 1284
TspGWI ACGGA 1 cut(s) 265
TspRI CASTG 2 cut(s) 1140, 1230
Van91I CCANNNNNTGG 1 cut(s) 1306
VpaK11BI GGWCC 1 cut(s) 1026
XapI RAATTY 1 cut(s) 1073
XbaI TCTAGA 1 cut(s) 736
XceI RCATGY 1 cut(s) 569
XcmI CCANNNNNNNNNTGG 1 cut(s) 1010
XmiI GTMKAC 1 cut(s) 799
XmnI GAANNNNTTC 1 cut(s) 1326
XspI CTAG 2 cut(s) 93, 737
ZrmI AGTACT 1 cut(s) 993
Zsp2I ATGCAT 2 cut(s) 388, 571
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.