Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007109.1

Orthogroup ID

OG0012417

Physical Location & Seq

Genomic Coordinates Reverse (-)

46658 .. 50557

Gene Structure 3900 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

atgggtactccttttcttcttcagggtggtgactacgctgagagcttgaaggagttcagtgccaataacattagggacaccttcaaagttatgcttgagatgggtgtggttcttatgttcggaggacaaatgaatattgtcaaggttagatctcttgacgggcatggcagccctctgaagatcagttcttgtctgtcataccagtttggatgttgtggtcttcatgtgcactttcatcttcaggttagtaatggaagcactagtagtgttaaaagggaggaagagaaagtagaagaagtacctgaaataacccatagagtatacctggatattgatattgaggaacagcgcttaggtagaattgtgattggattatatggtcaggttgtaccaaaaattgttggacggatcacaaggtttcatgagctcattggagctatgaatgtcgctgaaaagcatgacaacatccttgtgaagaactataattcgagatccttagaaatagtgcatattccggaatccaattatagtcgcgcccctaagagaatgcgccaagagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003849 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006520 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009423 GO:0009507 GO:0009536 GO:0009611 GO:0009987 GO:0016053 GO:0016740 GO:0016765 GO:0019438 GO:0019752 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0043650 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046417 GO:0050896 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 ko02024 map00400 map01100 map01110 map01130 map01230 map02024

Pfam Domains

Protein Families

DAHP_synth_2

Protein Analysis

186

Amino Acids

21.03

Weight (kDa)

7.1

Isoelectric Point (pI)

54.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DAHP_synth_2	PF01474	2 - 54	7.4e-13	Class-II DAHP synthetase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012417)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33510
malus_domestica	MD04G1198600.v1.1 MD04G1198700.v1.1 MD06G1151000.v1.1 MD07G1214500.v1.1
prunus_persica	Prupe.6G191200_v2.0.a1
pyrus_communis	pycom08g16040 pycom15g28280
rosa_chinensis	RchiOBHm_Chr2g0119461 RchiOBHm_Chr4g0406791 RchiOBHm_Chr5g0039991
rosa_laevigata	RLG00000001907 RLG00000019004
rosa_multiflora	Rmu_sc0006932.1_g000001 Rmu_sc0007109.1_g000014 Rmu_sc0008008.1_g000018
rosa_roxburghii	Rroxscaffold_3G00234980
rosa_samantha	Rh7AG367000 Rh7DG360900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	321
AccII	CGCG	1 cut(s)	534
AccIII	TCCGGA	1 cut(s)	514
AclWI	GGATC	2 cut(s)	416, 486
AcuI	CTGAAG	3 cut(s)	5, 197, 224
AfaI	GTAC	3 cut(s)	7, 300, 390
AfeI	AGCGCT	1 cut(s)	350
AgsI	TTSAA	2 cut(s)	49, 85
AhlI	ACTAGT	1 cut(s)	260
AjnI	CCWGG	1 cut(s)	324
AluBI	AGCT	3 cut(s)	45, 427, 437
AluI	AGCT	3 cut(s)	45, 427, 437
Alw21I	GWGCWC	2 cut(s)	231, 429
Alw44I	GTGCAC	1 cut(s)	227
AlwI	GGATC	2 cut(s)	416, 486
Aor13HI	TCCGGA	1 cut(s)	514
Aor51HI	AGCGCT	1 cut(s)	350
ApaLI	GTGCAC	1 cut(s)	227
ApeKI	GCWGC	1 cut(s)	168
Asp700I	GAANNNNTTC	1 cut(s)	53
AspLEI	GCGC	3 cut(s)	351, 536, 552
AsuHPI	GGTGA	1 cut(s)	41
BaeGI	GKGCMC	1 cut(s)	231
BanII	GRGCYC	1 cut(s)	429
BbsI	GAAGAC	1 cut(s)	212
Bbv12I	GWGCWC	2 cut(s)	231, 429
BbvI	GCAGC	1 cut(s)	180
BccI	CCATC	1 cut(s)	94
BciT130I	CCWGG	1 cut(s)	326
BcuI	ACTAGT	1 cut(s)	260
BfaI	CTAG	1 cut(s)	261
BfoI	RGCGCY	1 cut(s)	352
BglII	AGATCT	1 cut(s)	149
BisI	GCNGC	1 cut(s)	169
BlsI	GCNGC	1 cut(s)	170
Bme1390I	CCNGG	1 cut(s)	326
BmrFI	CCNGG	1 cut(s)	326
BpiI	GAAGAC	1 cut(s)	212
Bpu10I	CCTNAGC	1 cut(s)	352
BpuEI	CTTGAG	1 cut(s)	116
BsaWI	WCCGGW	1 cut(s)	514
Bse1I	ACTGG	1 cut(s)	202
BseAI	TCCGGA	1 cut(s)	514
BseBI	CCWGG	1 cut(s)	326
BseGI	GGATG	2 cut(s)	215, 465
BseMII	CTCAG	1 cut(s)	30
BseNI	ACTGG	1 cut(s)	202
BseSI	GKGCMC	1 cut(s)	231
BseXI	GCAGC	1 cut(s)	180
Bsh1236I	CGCG	1 cut(s)	534
BsiHKAI	GWGCWC	2 cut(s)	231, 429
BsiSI	CCGG	1 cut(s)	515
BslFI	GGGAC	1 cut(s)	89
BsmFI	GGGAC	1 cut(s)	89
BsmI	GAATGC	1 cut(s)	552
Bsp1286I	GDGCHC	2 cut(s)	231, 429
Bsp13I	TCCGGA	1 cut(s)	514
Bsp143I	GATC	4 cut(s)	149, 180, 408, 491
BspCNI	CTCAG	1 cut(s)	31
BspEI	TCCGGA	1 cut(s)	514
BspFNI	CGCG	1 cut(s)	534
BspHI	TCATGA	1 cut(s)	421
BspPI	GGATC	2 cut(s)	416, 486
BsrI	ACTGG	1 cut(s)	202
BssMI	GATC	4 cut(s)	149, 180, 408, 491
BssNAI	GTATAC	1 cut(s)	322
Bst1107I	GTATAC	1 cut(s)	322
Bst2UI	CCWGG	1 cut(s)	326
Bst6I	CTCTTC	1 cut(s)	276
BstDEI	CTNAG	4 cut(s)	39, 352, 496, 540
BstF5I	GGATG	2 cut(s)	215, 465
BstFNI	CGCG	1 cut(s)	534
BstH2I	RGCGCY	1 cut(s)	352
BstHHI	GCGC	3 cut(s)	351, 536, 552
BstKTI	GATC	4 cut(s)	152, 183, 411, 494
BstMBI	GATC	4 cut(s)	149, 180, 408, 491
BstNI	CCWGG	1 cut(s)	326
BstSCI	CCNGG	1 cut(s)	324
BstSLI	GKGCMC	1 cut(s)	231
BstUI	CGCG	1 cut(s)	534
BstV1I	GCAGC	1 cut(s)	180
BstV2I	GAAGAC	1 cut(s)	212
BstX2I	RGATCY	2 cut(s)	149, 491
BstYI	RGATCY	2 cut(s)	149, 491
BstZ17I	GTATAC	1 cut(s)	322
BtsCI	GGATG	2 cut(s)	215, 465
BtsIMutI	CAGTG	1 cut(s)	64
CciI	TCATGA	1 cut(s)	421
CfoI	GCGC	3 cut(s)	351, 536, 552
Csp6I	GTAC	3 cut(s)	6, 299, 389
CviAII	CATG	4 cut(s)	164, 224, 422, 458
CviJI	RGCY	4 cut(s)	45, 171, 427, 437
CviKI_1	RGCY	4 cut(s)	45, 171, 427, 437
CviQI	GTAC	3 cut(s)	6, 299, 389
DdeI	CTNAG	4 cut(s)	39, 352, 496, 540
DpnI	GATC	4 cut(s)	151, 182, 410, 493
DpnII	GATC	4 cut(s)	149, 180, 408, 491
Eam1104I	CTCTTC	1 cut(s)	276
EarI	CTCTTC	1 cut(s)	276
Ecl136II	GAGCTC	1 cut(s)	427
Eco24I	GRGCYC	1 cut(s)	429
Eco47III	AGCGCT	1 cut(s)	350
Eco53kI	GAGCTC	1 cut(s)	427
Eco57I	CTGAAG	3 cut(s)	5, 197, 224
EcoICRI	GAGCTC	1 cut(s)	427
EcoRII	CCWGG	1 cut(s)	324
EcoT38I	GRGCYC	1 cut(s)	429
FaeI	CATG	4 cut(s)	167, 227, 425, 461
FalI	AAGNNNNNCTT	2 cut(s)	78, 110
FaqI	GGGAC	1 cut(s)	89
FatI	CATG	4 cut(s)	163, 223, 421, 457
FblI	GTMKAC	1 cut(s)	321
Fnu4HI	GCNGC	1 cut(s)	169
FokI	GGATG	2 cut(s)	222, 452
FriOI	GRGCYC	1 cut(s)	429
Fsp4HI	GCNGC	1 cut(s)	169
FspBI	CTAG	1 cut(s)	261
GlaI	GCGC	3 cut(s)	350, 535, 551
GluI	GCNGC	1 cut(s)	169
HaeII	RGCGCY	1 cut(s)	352
HapII	CCGG	1 cut(s)	515
HhaI	GCGC	3 cut(s)	351, 536, 552
Hin1II	CATG	4 cut(s)	167, 227, 425, 461
Hin6I	GCGC	3 cut(s)	349, 534, 550
HinP1I	GCGC	3 cut(s)	349, 534, 550
HinfI	GANTC	1 cut(s)	518
HpaII	CCGG	1 cut(s)	515
HphI	GGTGA	1 cut(s)	41
Hpy166II	GTNNAC	2 cut(s)	229, 322
Hpy188I	TCNGA	2 cut(s)	122, 177
Hpy188III	TCNNGA	4 cut(s)	155, 422, 489, 515
Hpy8I	GTNNAC	2 cut(s)	229, 322
HpyAV	CCTTC	2 cut(s)	43, 91
HpyCH4V	TGCA	2 cut(s)	229, 508
HpyF3I	CTNAG	4 cut(s)	39, 352, 496, 540
Hsp92II	CATG	4 cut(s)	167, 227, 425, 461
HspAI	GCGC	3 cut(s)	349, 534, 550
Kpn2I	TCCGGA	1 cut(s)	514
Kzo9I	GATC	4 cut(s)	149, 180, 408, 491
LmnI	GCTCC	1 cut(s)	434
LpnPI	CCDG	8 cut(s)	8, 215, 227, 311, 315, 338, 368, 528
Lsp1109I	GCAGC	1 cut(s)	180
MaeI	CTAG	1 cut(s)	261
MaeIII	GTNAC	1 cut(s)	29
MalI	GATC	4 cut(s)	151, 182, 410, 493
MboI	GATC	4 cut(s)	149, 180, 408, 491
MboII	GAAGA	8 cut(s)	8, 11, 190, 212, 230, 293, 305, 487
MflI	RGATCY	2 cut(s)	149, 491
MhlI	GDGCHC	2 cut(s)	231, 429
MluCI	AATT	4 cut(s)	360, 396, 484, 523
MmeI	TCCRAC	1 cut(s)	382
MnlI	CCTC	4 cut(s)	116, 183, 271, 334
MroI	TCCGGA	1 cut(s)	514
MroXI	GAANNNNTTC	1 cut(s)	53
MseI	TTAA	1 cut(s)	270
MslI	CAYNNNNRTG	1 cut(s)	470
MspI	CCGG	1 cut(s)	515
MspR9I	CCNGG	1 cut(s)	326
Mva1269I	GAATGC	1 cut(s)	552
MvaI	CCWGG	1 cut(s)	326
MvnI	CGCG	1 cut(s)	534
NdeII	GATC	4 cut(s)	149, 180, 408, 491
NlaIII	CATG	4 cut(s)	167, 227, 425, 461
NmuCI	GTSAC	1 cut(s)	29
PagI	TCATGA	1 cut(s)	421
PctI	GAATGC	1 cut(s)	552
PdmI	GAANNNNTTC	1 cut(s)	53
PfeI	GAWTC	1 cut(s)	518
PkrI	GCNGC	1 cut(s)	170
Psp124BI	GAGCTC	1 cut(s)	429
Psp6I	CCWGG	1 cut(s)	324
PspGI	CCWGG	1 cut(s)	324
PsuI	RGATCY	2 cut(s)	149, 491
RsaI	GTAC	3 cut(s)	7, 300, 390
RsaNI	GTAC	3 cut(s)	6, 299, 389
RseI	CAYNNNNRTG	1 cut(s)	470
SacI	GAGCTC	1 cut(s)	429
SaqAI	TTAA	1 cut(s)	270
SatI	GCNGC	1 cut(s)	169
Sau3AI	GATC	4 cut(s)	149, 180, 408, 491
ScrFI	CCNGG	1 cut(s)	326
SduI	GDGCHC	2 cut(s)	231, 429
SmiMI	CAYNNNNRTG	1 cut(s)	470
SmlI	CTYRAG	1 cut(s)	95
SmoI	CTYRAG	1 cut(s)	95
SpeI	ACTAGT	1 cut(s)	260
Sse9I	AATT	4 cut(s)	360, 396, 484, 523
SspI	AATATT	1 cut(s)	136
SspMI	CTAG	1 cut(s)	261
SstI	GAGCTC	1 cut(s)	429
StyD4I	CCNGG	1 cut(s)	324
TaqI	TCGA	1 cut(s)	488
TasI	AATT	4 cut(s)	360, 396, 484, 523
TfiI	GAWTC	1 cut(s)	518
Tru1I	TTAA	1 cut(s)	270
Tru9I	TTAA	1 cut(s)	270
TscAI	CASTG	1 cut(s)	64
TseFI	GTSAC	1 cut(s)	29
TseI	GCWGC	1 cut(s)	168
Tsp45I	GTSAC	1 cut(s)	29
TspDTI	ATGAA	5 cut(s)	146, 212, 224, 410, 455
TspGWI	ACGGA	1 cut(s)	421
TspRI	CASTG	1 cut(s)	64
VneI	GTGCAC	1 cut(s)	227
XmiI	GTMKAC	1 cut(s)	321
XmnI	GAANNNNTTC	1 cut(s)	53
XspI	CTAG	1 cut(s)	261

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.