Rmu_sc0008017.1_g000009

WD repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008017.1
OG0012301
Physical Location & Seq
Reverse (-)
30103 .. 33731
3629 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008017.1_g000009.1.cds

Sequence Viewer

Length: 2841 bp
atgatcatggagccgaagatggagaggaagaggacgttcgctatgaactgggacggcctccacgacgaagaagacgacgaccgcttcttcgagtcccgggagagaatctcctccgccgtgcctatcgacctcgaagcctcctcctccgacgatgaggacttcgacgacagtcgtatgtccttcgcctcctgcgtctcctccgtccgaaacgacgtcgaggtgctgcgagccttgtccgccgccgagccgtccttcgcctcgtcgcctccgatgtcaccggactacaacatctggatggccgcgccggggtcgatctccgaacgccgcaggcggttgttgcagggcatgggattggccaacggcggcaaagacatcgtcagcttcagacgcctcgtttcgaataaagccccaaacggcgtctttccggccgttacgagttgccctactcgctctcgggaaaagatacaagttcccgaaacggcgccagaacccgatcccgatccggagccggagtcgggggcttcgaattcgccgttgccggtgatgcttgtacggtccagatcggaaggagagatcgaagctttctcggccgataaacgaaggaaagaggaggtaattggcactgtctcgaaacaacggctgacaagaacgtcgtcggcgatcgcggcgcctagctctaggatgtgtttttccacgacgcctcaaagcgacgtgggaaccaagaccgtccgatctaggcaaaacagcgccgcattgtcgacggagttcaccaacaatttaggggcgttcttcttgattaaaaatctggacacaggaaccgagttcattgtgaacgagtacgatcaaaacgggtgttggaacaagtttagtgatctccaaacggggaagaaattgaccgtggacgagtttgagaagtccgtcgggtactcgccggtggtgaaggaggtgatgcggcggcaaaatgtcaacattgaagccgggattgagaggaaggtaccggcaggagccaattcgtttgtgtcaaagagtttgaggatgagcaagagaaaggtggctcttttgaagaatagcataaaaggtgtgggaagtgctgtgagtgtactaattggggataaggatcaacacgcctcgtcgccgccgccgccgctgccgcaggaccagaaatcaagcaaggctaattcggggtctggttcggagtggatcaaagttaggcagactgggaagtcatacaaggagctatcagcattgcatttgtgccaggagattcaggctcatgagggctcaatttggaccatcaagtttagcttggatgctaggtttcttgctagtgctggagaggacagggtcattcatgtatgggaagttcaagaatgtgagattatgtccatggatagcaatgcgaacccgctgcatccctcctcggtgtccccatatccggatcgatcaatgtgtcttagctctgaagcttcaatttcctctgagaagaagaagaaggggaagggaggctcttctaggaaaactaatcccattcctgactatgtccatgtacccgaattcgtgtttgccctctcggagaaacctgtgtgctctttcgaaggtcatttggatgcagtactggacctgtcatggtccagagatcagctattgctttcatcttcaatggacaaaactgttagattatgggatatggtgaccaagagttgtttaaagatgtttgcccacaatgattatgtaacttgcatacagttcaatccattggacgacagtgtttttctcagcggctcccttgatgcgaagcttcgattatgggacatatctgatcgaagagtggtggactggactgatcttcatgaaatggtcaccgctgcatgctatactccagatggccaggctgccatcattggctcgcacaaagggaactgtcgtatgtacaatgcagaagattgtaaattaagtcaagaaggccagattgatattaaaaacaagaagaagaatcaagcaaagaaaattacgggtttccagttttctccgattaatccatctgaaatgcttgtcacatctgctgattcccggattaggattgtggacggtttccgaaatacaagcagtcaaattggagcgtcattcactcccaatggaaagtacattatatgtgccagtgaagattctcatgtatatgtatggaagcgtgaagagcctcgagtgtcagccgcaggaaaaaagagcacaatcaccaccacttctcatgaatattttcagtgtaaagatgtttcagtagcaatcccatggcctggcaccataaaaggtgaccctcccccgcctgtgtctgtgcattcttctaagaggcactcaaaacgttcctctgtacagccagtttcaggaactgcatcacctactcaagacggaggagacagcaagagattcctgccacctcttccaaagaaaaacactaatcctagtactcctcctagtgcaacagcggagaaaaccactaatcttagtactcctcctaatgcgacagcggagaaaccttcgactcccccaccagaagatcaggatccatctgaaatttctcgaacggattctgggattggcgagtcattcagctcagacccttcctctattaggtatggtggcgattcaccttctatatcttctggcaatgcatcatcatcttggtcttcctcttggtcctctttgtttgggcatgaatcgagccaaacaacccaagcttggggcttggtcattgtgacagccactctggaaggtgaaatcagggcatatcaaaattttgggataccaagaagggtgcccggcagtttttttggaggtcctacctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WD40

Protein Analysis

946

Amino Acids

103.56

Weight (kDa)

6.79

Isoelectric Point (pI)

55.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012301)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37670 AT2G37670 AT5G02430
fragaria_vesca FvH4_6g13960
malus_domestica MD04G1127300.v1.1 MD12G1140500.v1.1
prunus_persica Prupe.6G253900_v2.0.a1 Prupe.6G253900_v2.0.a1
pyrus_communis pycom04g11410
rosa_chinensis RchiOBHm_Chr3g0466781
rosa_laevigata RLG00000024553
rosa_multiflora Rmu_sc0008017.1_g000009
rosa_roxburghii Rroxscaffold_6G00414170
rosa_rugosa Rorug03G0083800
rosa_samantha Rh3AG131000 Rh3BG152000 Rh3CG151900 Rh3DG152700
rosa_wichuraiana Rw3G012380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 649, 1222
AatII GACGTC 1 cut(s) 216
Acc65I GGTACC 1 cut(s) 994
AccB1I GGYRCC 5 cut(s) 481, 667, 994, 2294, 2809
AccB7I CCANNNNNTGG 1 cut(s) 2291
AccI GTMKAC 1 cut(s) 758
AccII CGCG 2 cut(s) 302, 665
AccIII TCCGGA 2 cut(s) 502, 1435
AclI AACGTT 1 cut(s) 2356
AclWI GGATC 7 cut(s) 488, 494, 1125, 1208, 1446, 2552, 2565
AcoI YGGCCR 5 cut(s) 297, 354, 426, 588, 1885
AcsI RAATTY 4 cut(s) 526, 1553, 2568, 2788
AcuI CTGAAG 2 cut(s) 367, 1482
AcyI GRCGYC 6 cut(s) 213, 388, 417, 482, 668, 698
AfiI CCNNNNNNNGG 9 cut(s) 306, 515, 1435, 2076, 2291, 2378, 2625, 2733, 2734
AgsI TTSAA 6 cut(s) 974, 1063, 1367, 1470, 1659, 1750
AjiI CACGTC 1 cut(s) 712
AjnI CCWGG 3 cut(s) 1257, 1887, 2290
Alw21I GWGCWC 2 cut(s) 1589, 2228
Alw26I GTCTC 3 cut(s) 199, 631, 2403
AlwI GGATC 7 cut(s) 488, 494, 1125, 1208, 1446, 2552, 2565
AlwNI CAGNNNCTG 1 cut(s) 2384
Ama87I CYCGRG 3 cut(s) 96, 453, 2199
Aor13HI TCCGGA 2 cut(s) 502, 1435
AoxI GGCC 8 cut(s) 55, 297, 354, 426, 588, 1885, 1963, 2288
ApeKI GCWGC 5 cut(s) 223, 1147, 1408, 1865, 1892
ApoI RAATTY 4 cut(s) 526, 1553, 2568, 2788
ArsI GACNNNNNNTTYG 4 cut(s) 71, 103, 360, 392
AseI ATTAAT 1 cut(s) 2034
AsiSI GCGATCGC 1 cut(s) 663
Asp700I GAANNNNTTC 2 cut(s) 2253, 2581
Asp718I GGTACC 1 cut(s) 994
AspLEI GCGC 4 cut(s) 304, 484, 670, 749
AspS9I GGNCC 7 cut(s) 555, 1156, 1290, 1618, 1629, 2691, 2831
AsuC2I CCSGG 6 cut(s) 97, 98, 306, 979, 2071, 2814
AsuII TTCGAA 3 cut(s) 398, 524, 1593
AvaI CYCGRG 3 cut(s) 96, 453, 2199
AvaII GGWCC 7 cut(s) 555, 1156, 1290, 1618, 1629, 2691, 2831
BaeGI GKGCMC 1 cut(s) 2814
BalI TGGCCA 2 cut(s) 356, 1887
BamHI GGATCC 1 cut(s) 2557
BanI GGYRCC 5 cut(s) 481, 667, 994, 2294, 2809
BanII GRGCYC 1 cut(s) 1283
BbsI GAAGAC 2 cut(s) 78, 2673
Bbv12I GWGCWC 2 cut(s) 1589, 2228
BbvI GCAGC 5 cut(s) 210, 1134, 1395, 1852, 1879
BccI CCATC 7 cut(s) 13, 289, 1301, 1877, 1904, 2047, 2569
BceAI ACGGC 9 cut(s) 70, 101, 232, 376, 413, 430, 495, 517, 653
BcgI CGANNNNNNTGC 4 cut(s) 355, 389, 1390, 1424
BciT130I CCWGG 3 cut(s) 1259, 1889, 2292
BciVI GTATCC 1 cut(s) 2790
BclI TGATCA 1 cut(s) 3
BcnI CCSGG 6 cut(s) 97, 98, 306, 979, 2071, 2814
BcoDI GTCTC 3 cut(s) 199, 631, 2403
BfaI CTAG 9 cut(s) 672, 678, 735, 1314, 1326, 1512, 2457, 2469, 2839
BfoI RGCGCY 3 cut(s) 485, 671, 750
BfuI GTATCC 1 cut(s) 2790
BmcAI AGTACT 3 cut(s) 1614, 2461, 2503
Bme1390I CCNGG 9 cut(s) 97, 98, 306, 979, 1259, 1889, 2071, 2292, 2814
Bme18I GGWCC 7 cut(s) 555, 1156, 1290, 1618, 1629, 2691, 2831
BmeT110I CYCGRG 3 cut(s) 96, 453, 2199
BmgBI CACGTC 1 cut(s) 712
BmgT120I GGNCC 7 cut(s) 555, 1156, 1290, 1618, 1629, 2691, 2831
BmrFI CCNGG 9 cut(s) 97, 98, 306, 979, 1259, 1889, 2071, 2292, 2814
BmrI ACTGGG 2 cut(s) 58, 1227
BmsI GCATC 8 cut(s) 534, 939, 1300, 1420, 1597, 1780, 2396, 2675
BmuI ACTGGG 2 cut(s) 58, 1227
BoxI GACNNNNGTC 1 cut(s) 168
BpiI GAAGAC 2 cut(s) 78, 2673
BplI GAGNNNNNCTC 2 cut(s) 92, 124
BpmI CTGGAG 2 cut(s) 1353, 1863
Bpu14I TTCGAA 3 cut(s) 398, 524, 1593
BpuEI CTTGAG 1 cut(s) 2382
BpuMI CCSGG 6 cut(s) 97, 98, 306, 979, 2071, 2814
Bsa29I ATCGAT 1 cut(s) 1441
BsaBI GATNNNNATC 3 cut(s) 498, 1116, 2556
BsaHI GRCGYC 6 cut(s) 213, 388, 417, 482, 668, 698
BsaJI CCNNGG 6 cut(s) 96, 305, 897, 1386, 1419, 2285
BsaWI WCCGGW 3 cut(s) 277, 502, 1435
BsaXI ACNNNNNCTCC 2 cut(s) 497, 527
Bsc4I CCNNNNNNNGG 9 cut(s) 306, 515, 1435, 2076, 2291, 2378, 2625, 2733, 2734
Bse118I RCCGGY 3 cut(s) 538, 931, 997
Bse1I ACTGG 7 cut(s) 53, 1222, 1620, 1841, 2020, 2157, 2372
Bse3DI GCAATG 3 cut(s) 1244, 1402, 2668
Bse8I GATNNNNATC 3 cut(s) 498, 1116, 2556
BseAI TCCGGA 2 cut(s) 502, 1435
BseBI CCWGG 3 cut(s) 1259, 1889, 2292
BseCI ATCGAT 1 cut(s) 1441
BseDI CCNNGG 6 cut(s) 96, 305, 897, 1386, 1419, 2285
BseGI GGATG 6 cut(s) 300, 687, 1041, 1315, 1411, 1612
BseJI GATNNNNATC 3 cut(s) 498, 1116, 2556
BseLI CCNNNNNNNGG 9 cut(s) 306, 515, 1435, 2076, 2291, 2378, 2625, 2733, 2734
BseMI GCAATG 3 cut(s) 1244, 1402, 2668
BseMII CTCAG 3 cut(s) 1470, 1789, 2622
BseNI ACTGG 7 cut(s) 53, 1222, 1620, 1841, 2020, 2157, 2372
BseRI GAGGAG 9 cut(s) 100, 130, 133, 187, 623, 1408, 2421, 2454, 2496
BseSI GKGCMC 1 cut(s) 2814
BseX3I CGGCCG 2 cut(s) 426, 588
BseXI GCAGC 5 cut(s) 210, 1134, 1395, 1852, 1879
Bsh1236I CGCG 2 cut(s) 302, 665
Bsh1285I CGRYCG 4 cut(s) 82, 429, 591, 663
BshFI GGCC 8 cut(s) 57, 299, 356, 428, 590, 1887, 1965, 2290
BshNI GGYRCC 5 cut(s) 481, 667, 994, 2294, 2809
BshVI ATCGAT 1 cut(s) 1441
BsiEI CGRYCG 4 cut(s) 82, 429, 591, 663
BsiHKAI GWGCWC 2 cut(s) 1589, 2228
BsiHKCI CYCGRG 3 cut(s) 96, 453, 2199
BslFI GGGAC 4 cut(s) 65, 79, 1411, 1823
BslI CCNNNNNNNGG 9 cut(s) 306, 515, 1435, 2076, 2291, 2378, 2625, 2733, 2734
BsmAI GTCTC 3 cut(s) 199, 631, 2403
BsmBI CGTCTC 1 cut(s) 199
BsmFI GGGAC 4 cut(s) 65, 79, 1411, 1823
BsmI GAATGC 1 cut(s) 2332
BsnI GGCC 8 cut(s) 57, 299, 356, 428, 590, 1887, 1965, 2290
BsoBI CYCGRG 3 cut(s) 96, 453, 2199
Bsp119I TTCGAA 3 cut(s) 398, 524, 1593
Bsp1286I GDGCHC 4 cut(s) 1283, 1589, 2228, 2814
Bsp13I TCCGGA 2 cut(s) 502, 1435
Bsp1407I TGTACA 2 cut(s) 1929, 2365
Bsp19I CCATGG 2 cut(s) 1386, 2285
BspANI GGCC 8 cut(s) 57, 299, 356, 428, 590, 1887, 1965, 2290
BspCNI CTCAG 3 cut(s) 1471, 1788, 2621
BspDI ATCGAT 1 cut(s) 1441
BspEI TCCGGA 2 cut(s) 502, 1435
BspFNI CGCG 2 cut(s) 302, 665
BspHI TCATGA 3 cut(s) 1273, 1849, 2245
BspPI GGATC 7 cut(s) 488, 494, 1125, 1208, 1446, 2552, 2565
BspQI GCTCTTC 2 cut(s) 1513, 2187
BspT104I TTCGAA 3 cut(s) 398, 524, 1593
BspT107I GGYRCC 5 cut(s) 481, 667, 994, 2294, 2809
BsrDI GCAATG 3 cut(s) 1244, 1402, 2668
BsrFI RCCGGY 3 cut(s) 538, 931, 997
BsrGI TGTACA 2 cut(s) 1929, 2365
BsrI ACTGG 7 cut(s) 53, 1222, 1620, 1841, 2020, 2157, 2372
BssAI RCCGGY 3 cut(s) 538, 931, 997
BssECI CCNNGG 6 cut(s) 96, 305, 897, 1386, 1419, 2285
BssNI GRCGYC 6 cut(s) 213, 388, 417, 482, 668, 698
BssT1I CCWWGG 2 cut(s) 1386, 2285
Bst2UI CCWGG 3 cut(s) 1259, 1889, 2292
Bst6I CTCTTC 5 cut(s) 23, 1513, 1819, 2187, 2439
BstACI GRCGYC 6 cut(s) 213, 388, 417, 482, 668, 698
BstAUI TGTACA 2 cut(s) 1929, 2365
BstBI TTCGAA 3 cut(s) 398, 524, 1593
BstC8I GCNNGC 4 cut(s) 228, 329, 1870, 1907
BstDEI CTNAG 6 cut(s) 1454, 1479, 1775, 2340, 2498, 2608
BstDSI CCRYGG 3 cut(s) 897, 1386, 2285
BstEII GGTNACC 3 cut(s) 1690, 1858, 2306
BstENI CCTNNNNNAGG 1 cut(s) 2623
BstF5I GGATG 6 cut(s) 300, 687, 1041, 1315, 1411, 1612
BstFNI CGCG 2 cut(s) 302, 665
BstH2I RGCGCY 3 cut(s) 485, 671, 750
BstHHI GCGC 4 cut(s) 304, 484, 670, 749
BstMAI GTCTC 3 cut(s) 199, 631, 2403
BstMCI CGRYCG 4 cut(s) 82, 429, 591, 663
BstNI CCWGG 3 cut(s) 1259, 1889, 2292
BstNSI RCATGY 1 cut(s) 1872
BstPAI GACNNNNGTC 1 cut(s) 168
BstPI GGTNACC 3 cut(s) 1690, 1858, 2306
BstSCI CCNGG 9 cut(s) 95, 96, 304, 977, 1257, 1887, 2069, 2290, 2812
BstSLI GKGCMC 1 cut(s) 2814
BstUI CGCG 2 cut(s) 302, 665
BstV1I GCAGC 5 cut(s) 210, 1134, 1395, 1852, 1879
BstV2I GAAGAC 2 cut(s) 78, 2673
BstX2I RGATCY 1 cut(s) 2557
BstYI RGATCY 1 cut(s) 2557
BstZI CGGCCG 2 cut(s) 426, 588
Bsu15I ATCGAT 1 cut(s) 1441
BsuI GTATCC 1 cut(s) 2790
BsuRI GGCC 8 cut(s) 57, 299, 356, 428, 590, 1887, 1965, 2290
BsuTUI ATCGAT 1 cut(s) 1441
BtgI CCRYGG 3 cut(s) 897, 1386, 2285
BtrI CACGTC 1 cut(s) 712
BtsCI GGATG 6 cut(s) 300, 687, 1041, 1315, 1411, 1612
BtsIMutI CAGTG 4 cut(s) 621, 1771, 2164, 2264
Cac8I GCNNGC 4 cut(s) 228, 329, 1870, 1907
CaiI CAGNNNCTG 1 cut(s) 2384
CciI TCATGA 3 cut(s) 1273, 1849, 2245
CfoI GCGC 4 cut(s) 304, 484, 670, 749
Cfr10I RCCGGY 3 cut(s) 538, 931, 997
Cfr13I GGNCC 7 cut(s) 555, 1156, 1290, 1618, 1629, 2691, 2831
Cfr9I CCCGGG 1 cut(s) 96
ClaI ATCGAT 1 cut(s) 1441
CseI GACGC 5 cut(s) 181, 396, 406, 706, 2109
DdeI CTNAG 6 cut(s) 1454, 1479, 1775, 2340, 2498, 2608
DinI GGCGCC 2 cut(s) 483, 669
DraI TTTAAA 1 cut(s) 1707
DrdI GACNNNNNNGTC 2 cut(s) 649, 1222
DseDI GACNNNNNNGTC 2 cut(s) 649, 1222
EaeI YGGCCR 5 cut(s) 297, 354, 426, 588, 1885
EagI CGGCCG 2 cut(s) 426, 588
Eam1104I CTCTTC 5 cut(s) 23, 1513, 1819, 2187, 2439
EarI CTCTTC 5 cut(s) 23, 1513, 1819, 2187, 2439
EciI GGCGGA 2 cut(s) 103, 226
EclXI CGGCCG 2 cut(s) 426, 588
Eco130I CCWWGG 2 cut(s) 1386, 2285
Eco24I GRGCYC 1 cut(s) 1283
Eco47I GGWCC 7 cut(s) 555, 1156, 1290, 1618, 1629, 2691, 2831
Eco52I CGGCCG 2 cut(s) 426, 588
Eco57I CTGAAG 2 cut(s) 367, 1482
Eco88I CYCGRG 3 cut(s) 96, 453, 2199
Eco91I GGTNACC 3 cut(s) 1690, 1858, 2306
EcoNI CCTNNNNNAGG 1 cut(s) 2623
EcoO109I RGGNCCY 1 cut(s) 2831
EcoO65I GGTNACC 3 cut(s) 1690, 1858, 2306
EcoRI GAATTC 2 cut(s) 526, 1553
EcoRII CCWGG 3 cut(s) 1257, 1887, 2290
EcoT14I CCWWGG 2 cut(s) 1386, 2285
EcoT22I ATGCAT 1 cut(s) 2668
EcoT38I GRGCYC 1 cut(s) 1283
EgeI GGCGCC 2 cut(s) 483, 669
EheI GGCGCC 2 cut(s) 483, 669
ErhI CCWWGG 2 cut(s) 1386, 2285
Esp3I CGTCTC 1 cut(s) 199
FalI AAGNNNNNCTT 2 cut(s) 1289, 1321
FaqI GGGAC 4 cut(s) 65, 79, 1411, 1823
FauI CCCGC 2 cut(s) 1413, 2325
FbaI TGATCA 1 cut(s) 3
FblI GTMKAC 1 cut(s) 758
FokI GGATG 6 cut(s) 307, 694, 1048, 1322, 1398, 1619
FriOI GRGCYC 1 cut(s) 1283
FspBI CTAG 9 cut(s) 672, 678, 735, 1314, 1326, 1512, 2457, 2469, 2839
GlaI GCGC 4 cut(s) 303, 483, 669, 748
GsuI CTGGAG 2 cut(s) 1353, 1863
HaeII RGCGCY 3 cut(s) 485, 671, 750
HaeIII GGCC 8 cut(s) 57, 299, 356, 428, 590, 1887, 1965, 2290
HgaI GACGC 5 cut(s) 181, 396, 406, 706, 2109
HhaI GCGC 4 cut(s) 304, 484, 670, 749
Hin1I GRCGYC 6 cut(s) 213, 388, 417, 482, 668, 698
Hin6I GCGC 4 cut(s) 302, 482, 668, 747
HinP1I GCGC 4 cut(s) 302, 482, 668, 747
HincII GTYRAC 2 cut(s) 759, 967
HindII GTYRAC 2 cut(s) 759, 967
HindIII AAGCTT 4 cut(s) 579, 1464, 1796, 2730
Hpy166II GTNNAC 8 cut(s) 759, 768, 832, 901, 967, 1100, 1834, 2086
Hpy8I GTNNAC 8 cut(s) 759, 768, 832, 901, 967, 1100, 1834, 2086
HpyCH4IV ACGT 5 cut(s) 35, 213, 650, 711, 2356
HpyF3I CTNAG 6 cut(s) 1454, 1479, 1775, 2340, 2498, 2608
HpySE526I ACGT 5 cut(s) 35, 213, 650, 711, 2356
Hsp92I GRCGYC 6 cut(s) 213, 388, 417, 482, 668, 698
HspAI GCGC 4 cut(s) 302, 482, 668, 747
KasI GGCGCC 2 cut(s) 481, 667
Kpn2I TCCGGA 2 cut(s) 502, 1435
KpnI GGTACC 1 cut(s) 998
Ksp22I TGATCA 1 cut(s) 3
LguI GCTCTTC 2 cut(s) 1513, 2187
LmnI GCTCC 6 cut(s) 10, 505, 1004, 1234, 1787, 2117
Lsp1109I GCAGC 5 cut(s) 210, 1134, 1395, 1852, 1879
LweI GCATC 8 cut(s) 534, 939, 1300, 1420, 1597, 1780, 2396, 2675
MaeI CTAG 9 cut(s) 672, 678, 735, 1314, 1326, 1512, 2457, 2469, 2839
MaeII ACGT 5 cut(s) 35, 213, 650, 711, 2356
MaeIII GTNAC 8 cut(s) 273, 430, 1690, 1732, 1858, 2053, 2306, 2749
MflI RGATCY 1 cut(s) 2557
MhlI GDGCHC 4 cut(s) 1283, 1589, 2228, 2814
MlsI TGGCCA 2 cut(s) 356, 1887
MluNI TGGCCA 2 cut(s) 356, 1887
Mly113I GGCGCC 2 cut(s) 482, 668
MlyI GAGTC 4 cut(s) 101, 521, 2530, 2606
MmeI TCCRAC 2 cut(s) 171, 836
Mox20I TGGCCA 2 cut(s) 356, 1887
Mph1103I ATGCAT 1 cut(s) 2668
MroI TCCGGA 2 cut(s) 502, 1435
MroXI GAANNNNTTC 2 cut(s) 2253, 2581
MscI TGGCCA 2 cut(s) 356, 1887
MseI TTAA 5 cut(s) 798, 1706, 1952, 1977, 2034
MslI CAYNNNNRTG 3 cut(s) 293, 1605, 2175
Msp20I TGGCCA 2 cut(s) 356, 1887
MspA1I CMGCKG 6 cut(s) 1147, 1408, 1779, 1865, 2480, 2522
MspR9I CCNGG 9 cut(s) 97, 98, 306, 979, 1259, 1889, 2071, 2292, 2814
Mva1269I GAATGC 1 cut(s) 2332
MvaI CCWGG 3 cut(s) 1259, 1889, 2292
MvnI CGCG 2 cut(s) 302, 665
NarI GGCGCC 2 cut(s) 482, 668
NciI CCSGG 6 cut(s) 97, 98, 306, 979, 2071, 2814
NcoI CCATGG 2 cut(s) 1386, 2285
NmeAIII GCCGAG 2 cut(s) 268, 566
NmuCI GTSAC 6 cut(s) 273, 1690, 1858, 2053, 2306, 2749
NsiI ATGCAT 1 cut(s) 2668
NspI RCATGY 1 cut(s) 1872
NspV TTCGAA 3 cut(s) 398, 524, 1593
PaeI GCATGC 1 cut(s) 1872
PaeR7I CTCGAG 1 cut(s) 2199
PagI TCATGA 3 cut(s) 1273, 1849, 2245
PciSI GCTCTTC 2 cut(s) 1513, 2187
PcsI WCGNNNNNNNCGW 7 cut(s) 60, 72, 189, 266, 521, 530, 656
PctI GAATGC 1 cut(s) 2332
PdmI GAANNNNTTC 2 cut(s) 2253, 2581
PfeI GAWTC 9 cut(s) 105, 1264, 1993, 2066, 2165, 2421, 2582, 2639, 2711
PflFI GACNNNGTC 3 cut(s) 374, 1343, 1538
PflMI CCANNNNNTGG 1 cut(s) 2291
PfoI TCCNGGA 1 cut(s) 2069
Ple19I CGATCG 1 cut(s) 663
PleI GAGTC 4 cut(s) 100, 520, 2530, 2605
PluTI GGCGCC 2 cut(s) 485, 671
PpsI GAGTC 4 cut(s) 100, 520, 2530, 2605
PpuMI RGGWCCY 1 cut(s) 2831
PshAI GACNNNNGTC 1 cut(s) 168
PshBI ATTAAT 1 cut(s) 2034
Psp1406I AACGTT 1 cut(s) 2356
Psp5II RGGWCCY 1 cut(s) 2831
Psp6I CCWGG 3 cut(s) 1257, 1887, 2290
PspEI GGTNACC 3 cut(s) 1690, 1858, 2306
PspGI CCWGG 3 cut(s) 1257, 1887, 2290
PspPI GGNCC 7 cut(s) 555, 1156, 1290, 1618, 1629, 2691, 2831
PspPPI RGGWCCY 1 cut(s) 2831
PspXI VCTCGAGB 1 cut(s) 2199
PsrI GAACNNNNNNTAC 2 cut(s) 1347, 1379
PstNI CAGNNNCTG 1 cut(s) 2384
PsuI RGATCY 1 cut(s) 2557
PsyI GACNNNGTC 3 cut(s) 374, 1343, 1538
PvuI CGATCG 1 cut(s) 663
RgaI GCGATCGC 1 cut(s) 663
RseI CAYNNNNRTG 3 cut(s) 293, 1605, 2175
SalI GTCGAC 1 cut(s) 757
SapI GCTCTTC 2 cut(s) 1513, 2187
SaqAI TTAA 5 cut(s) 798, 1706, 1952, 1977, 2034
Sau96I GGNCC 7 cut(s) 555, 1156, 1290, 1618, 1629, 2691, 2831
ScaI AGTACT 3 cut(s) 1614, 2461, 2503
SchI GAGTC 4 cut(s) 101, 521, 2530, 2606
ScrFI CCNGG 9 cut(s) 97, 98, 306, 979, 1259, 1889, 2071, 2292, 2814
SduI GDGCHC 4 cut(s) 1283, 1589, 2228, 2814
SfaAI GCGATCGC 1 cut(s) 663
SfaNI GCATC 8 cut(s) 534, 939, 1300, 1420, 1597, 1780, 2396, 2675
SfoI GGCGCC 2 cut(s) 483, 669
Sfr274I CTCGAG 1 cut(s) 2199
SfuI TTCGAA 3 cut(s) 398, 524, 1593
SgfI GCGATCGC 1 cut(s) 663
SgrAI CRCCGGYG 1 cut(s) 931
SinI GGWCC 7 cut(s) 555, 1156, 1290, 1618, 1629, 2691, 2831
SlaI CTCGAG 1 cut(s) 2199
SmaI CCCGGG 1 cut(s) 98
SmiMI CAYNNNNRTG 3 cut(s) 293, 1605, 2175
SmlI CTYRAG 2 cut(s) 2199, 2397
SmoI CTYRAG 2 cut(s) 2199, 2397
SphI GCATGC 1 cut(s) 1872
SspDI GGCGCC 2 cut(s) 481, 667
SspI AATATT 1 cut(s) 2252
SspMI CTAG 9 cut(s) 672, 678, 735, 1314, 1326, 1512, 2457, 2469, 2839
StyD4I CCNGG 9 cut(s) 95, 96, 304, 977, 1257, 1887, 2069, 2290, 2812
StyI CCWWGG 2 cut(s) 1386, 2285
TaiI ACGT 5 cut(s) 38, 216, 653, 714, 2359
TatI WGTACW 7 cut(s) 1099, 1612, 1929, 2142, 2365, 2459, 2501
TfiI GAWTC 9 cut(s) 105, 1264, 1993, 2066, 2165, 2421, 2582, 2639, 2711
Tru1I TTAA 5 cut(s) 798, 1706, 1952, 1977, 2034
Tru9I TTAA 5 cut(s) 798, 1706, 1952, 1977, 2034
TscAI CASTG 4 cut(s) 628, 1771, 2164, 2264
TseFI GTSAC 6 cut(s) 273, 1690, 1858, 2053, 2306, 2749
TseI GCWGC 5 cut(s) 223, 1147, 1408, 1865, 1892
Tsp45I GTSAC 6 cut(s) 273, 1690, 1858, 2053, 2306, 2749
TspDTI ATGAA 8 cut(s) 59, 814, 1340, 1641, 1838, 1866, 2262, 2724
TspGWI ACGGA 5 cut(s) 190, 776, 907, 2418, 2594
TspMI CCCGGG 1 cut(s) 96
TspRI CASTG 4 cut(s) 628, 1771, 2164, 2264
Tth111I GACNNNGTC 3 cut(s) 374, 1343, 1538
Van91I CCANNNNNTGG 1 cut(s) 2291
VpaK11BI GGWCC 7 cut(s) 555, 1156, 1290, 1618, 1629, 2691, 2831
VspI ATTAAT 1 cut(s) 2034
XagI CCTNNNNNAGG 1 cut(s) 2623
XapI RAATTY 4 cut(s) 526, 1553, 2568, 2788
XceI RCATGY 1 cut(s) 1872
XhoI CTCGAG 1 cut(s) 2199
XmaI CCCGGG 1 cut(s) 96
XmiI GTMKAC 1 cut(s) 758
XmnI GAANNNNTTC 2 cut(s) 2253, 2581
XspI CTAG 9 cut(s) 672, 678, 735, 1314, 1326, 1512, 2457, 2469, 2839
ZraI GACGTC 1 cut(s) 214
ZrmI AGTACT 3 cut(s) 1614, 2461, 2503
Zsp2I ATGCAT 1 cut(s) 2668
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.