Rh3CG151900

WD repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0012301
Physical Location & Seq
Forward (+)
12695812 .. 12700299
4488 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG151900.1

Sequence Viewer

Length: 2079 bp
ATGATCATGGAGCCGAAGATGGAGCGGAAGAGGACGTTCGCTATGAACTGGGACGGCCTCCACGACGAAGAAGACGACGACCGCTTCTTCGAGTCCCGGGAGAGAATCTCCTCCGCCGTGCCCATCGACCTCGAAGCCTCCTCCTCCGACGATGAGGACTTCGACGACAGTCGTATGTCCTTCGCCTCCTGCGTCTCCTCCGTCCGAAACGACGTCGAGGTGCTGCGAGCCTTGTCCGCCGCCGCCGCCGCCGAGCCGTCCTTCGCCTCGTCGCCTCCGATGTCACCGGACTACAACATCTGGATGGCCGCGCCGGGGTCGATCTCCGAACGCCGCAGGCGGTTGTTGCAGGGCATGGGATTGGCCAACGGCGGCAAAGACATCGTCAGCTTCAGACGCCTCGTTTCGAATAAAGCCCCAAACGGCGTCGTTCCGGCGGTTACGAGTTGCCCTACTCGCTCTCGGGAAAAGATACAAGTTCCCGAAACGGCGCCCGAACCCGATCCCGATCCGGAGCCGGAGTCGGGGGCTTCGAATTCGCCGTTGCCGATGATGCTTGTACGGTCCAGATCGGAAGGAGAGATCGAAGCTTTCTCGGCCGATAAACGAAGGAAAGAGGAGGTAATTGGCACTGTCTCGAAACAACGGCTGACAAGAACGTCGTCGGCGATCGCGGCGCCTAGCTCTAGGATGTGTTTTTCCACGACGCCTCAAAGCGACGGAGGAACCAAGACCGTCCGATCTAGGCAAAACAGCGCCGCATTGTCGACGGAGTTCACCAACAATTTAGGGGCGTTCTTCTTGATTAAAAATCTGGACACGGGAACCGAGTTCATTGTGAACGAGTACGATCAAAACGGGTGTTGGAACAAGTTTAGTGATCTCCAAACGGGGAAGAAATTGACCATGGACGAGTTTGAGAAGTCCGTCGGGTACTCGCCGGTGGTGAAGGAGGTGATGCGGCGGCAAAATGTCAACATTGAAGCCGGGATTGAGAGGAAGGTACCGGCAGGAGCCAATTCGTTTGTGTCAAAGAGTTTGAGGATGAGCAAGAGAAAGGTGGCTCTTTTGAAGAATAGCATAAAAGGTGTGGGAAGTGCTGTGAGTGTACTAATTGGGGATAAGGATCAACACGCCTCGCCGCCGCCGCCGCCGCTGCCGCAGGACCAGAAATCAAGCAAGGCTAATTCGGGGTCTGGTTCGGAGTGGATCAAAGTTAGGCAGACTGGGAAGTCATATAAGGAGCTATCAGCATTGCATTTGTGCCAGGAGATTCAGGCTCATGAGGGCTCAATTTGGACCATGAAGTTTAGCTTGGATGCTAGGTTTCTTGCTAGTGCTGGAGAGGACAGGGTCATTCATGTGTGGGAAGTTCAAGAATGTGAGATTATGTCCATGGATAGCAATGCGAACCCGCTGCATCCCTCCTCGGTGTCCCCATATCCGGATCGATCAATGTGTCTTAGCTCTGAAGCTACAATCTCCTCTGAGAAGAAGAAGAAGGGGAAGGGAGGCTCTTCTAGGAAAACTAATCCCATTCCTGACTATGTCCATGTACCCGAATTCGTGTTTGCCCTCTCGGAGAAACCTGTGTACTCTTTCGAAGGTCATTTGGATGCAGTACTGGACCTGTCATGGTCCAGAGATCAGCTATTGCTTTCATCTTCAATGGACAAAACTGTTAGATTATGGGATATGGTGACCAAGAGTTGTTTAAAGATGTTTGCCCACAATGATTATGTAACTTGCATACAGTTCAATCCATTGGACGACGGTGTTTTTCTCAGCGGCTCCCTTGATGCGAAGCTTCGATTATGGGACATACCTGATCGAAGAGTGGTGGACTGGACTGATCTTCATGAAATGGTCACCGCTGCATGCTATACTCCAGATGGCCAGGCTGCCATCATTGGCTCGCACAAAGGGAACTGTCGTATGTACAATGCAGAAGATTGTAAATTAAGTCAAGAAGGCCAGATTGATATTAAAAACAAGAAGAAGAATCAAGCAAAGAAAATTACCGGTTTCCAGGTAACTGTCCTCCCTCTGATTCCTTGCCAATTAACAGTTTCTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WD40

Protein Analysis

692

Amino Acids

76.45

Weight (kDa)

6.47

Isoelectric Point (pI)

54.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_WDR3_2nd PF25172 415 - 650 6.1e-17 WDR3 second beta-propeller domain
Beta-prop_THOC3 PF25174 417 - 464 6.7e-07 THOC3 beta-propeller domain
WD40 PF00400 422 - 456 6.9e-06 WD domain, G-beta repeat
Beta-prop_WDR36-Utp21_2nd PF25168 528 - 591 1.3e-08 WDR36/Utp21 second beta-propeller domain
WD40_Prp19 PF24814 528 - 652 4e-14 Prp19 WD40 domain
WD40 PF00400 529 - 565 2e-08 WD domain, G-beta repeat
Beta-prop_WDR3_1st PF25173 529 - 648 2.3e-16 WDR3 first beta-propeller domain
Beta-prop_WDR5 PF25175 529 - 654 2.8e-24 WDR5 beta-propeller domain
WD40_CDC20-Fz PF24807 531 - 650 6.3e-11 CDC20/Fizzy WD40 domain
Beta-prop_THOC3 PF25174 533 - 574 1.2e-06 THOC3 beta-propeller domain
EIF3I PF24805 533 - 660 5.1e-06 EIF3I
Beta-prop_IFT122_1st PF23381 533 - 648 5.7e-07 IFT122 first beta-propeller
Beta-prop_CAF1B_HIR1 PF24105 534 - 614 3.5e-10 CAF1B/HIR1 beta-propeller domain
WDR55 PF24796 536 - 652 3e-07 WDR55
Beta-prop_Aladin PF25460 536 - 654 2e-09 Aladin seven-bladed propeller
Beta-prop_THOC3 PF25174 537 - 660 2.7e-17 THOC3 beta-propeller domain
WD40_Gbeta PF25391 548 - 648 5.1e-10 G protein beta WD-40 repeat protein
Beta-prop_WDR90_POC16_2nd PF23393 552 - 653 3e-07 WDR90/POC16, second beta-propeller
Beta-prop_EML_2 PF23414 593 - 657 2.6e-07 Echinoderm microtubule-associated protein second beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012301)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37670 AT2G37670 AT5G02430
fragaria_vesca FvH4_6g13960
malus_domestica MD04G1127300.v1.1 MD12G1140500.v1.1
prunus_persica Prupe.6G253900_v2.0.a1 Prupe.6G253900_v2.0.a1
pyrus_communis pycom04g11410
rosa_chinensis RchiOBHm_Chr3g0466781
rosa_laevigata RLG00000024553
rosa_multiflora Rmu_sc0008017.1_g000009
rosa_roxburghii Rroxscaffold_6G00414170
rosa_rugosa Rorug03G0083800
rosa_samantha Rh3AG131000 Rh3BG152000 Rh3CG151900 Rh3DG152700
rosa_wichuraiana Rw3G012380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 658, 1231
AatII GACGTC 1 cut(s) 216
Acc65I GGTACC 1 cut(s) 1003
AccB1I GGYRCC 3 cut(s) 490, 676, 1003
AccBSI CCGCTC 1 cut(s) 25
AccI GTMKAC 1 cut(s) 767
AccII CGCG 2 cut(s) 311, 674
AccIII TCCGGA 2 cut(s) 511, 1444
AclWI GGATC 5 cut(s) 497, 503, 1134, 1217, 1455
AcoI YGGCCR 4 cut(s) 306, 363, 597, 1894
AcsI RAATTY 2 cut(s) 535, 1562
AcuI CTGAAG 2 cut(s) 376, 1491
AcyI GRCGYC 6 cut(s) 213, 397, 426, 491, 677, 707
AfaI GTAC 9 cut(s) 561, 848, 935, 1005, 1110, 1557, 1595, 1623, 1940
AfiI CCNNNNNNNGG 3 cut(s) 315, 524, 1444
AgeI ACCGGT 1 cut(s) 2021
AgsI TTSAA 5 cut(s) 983, 1072, 1376, 1668, 1759
AjnI CCWGG 3 cut(s) 1266, 1896, 2028
AjuI GAANNNNNNNTTGG 2 cut(s) 1298, 1330
AluBI AGCT 9 cut(s) 390, 590, 684, 1246, 1314, 1467, 1475, 1651, 1807
AluI AGCT 9 cut(s) 390, 590, 684, 1246, 1314, 1467, 1475, 1651, 1807
Alw26I GTCTC 2 cut(s) 199, 640
AlwI GGATC 5 cut(s) 497, 503, 1134, 1217, 1455
AlwNI CAGNNNCTG 1 cut(s) 2072
Ama87I CYCGRG 2 cut(s) 96, 462
Aor13HI TCCGGA 2 cut(s) 511, 1444
AoxI GGCC 6 cut(s) 55, 306, 363, 597, 1894, 1972
ApeKI GCWGC 5 cut(s) 223, 1156, 1417, 1874, 1901
ApoI RAATTY 2 cut(s) 535, 1562
ArsI GACNNNNNNTTYG 4 cut(s) 71, 103, 369, 401
AsiGI ACCGGT 1 cut(s) 2021
AsiSI GCGATCGC 1 cut(s) 672
Asp718I GGTACC 1 cut(s) 1003
AspLEI GCGC 4 cut(s) 313, 493, 679, 758
AspS9I GGNCC 5 cut(s) 564, 1165, 1299, 1627, 1638
AsuC2I CCSGG 4 cut(s) 97, 98, 315, 988
AsuHPI GGTGA 6 cut(s) 276, 769, 958, 967, 1711, 1861
AsuII TTCGAA 3 cut(s) 407, 533, 1602
AvaI CYCGRG 2 cut(s) 96, 462
AvaII GGWCC 5 cut(s) 564, 1165, 1299, 1627, 1638
BaeGI GKGCMC 1 cut(s) 123
BalI TGGCCA 2 cut(s) 365, 1896
BanI GGYRCC 3 cut(s) 490, 676, 1003
BanII GRGCYC 1 cut(s) 1292
BbsI GAAGAC 1 cut(s) 78
BbvI GCAGC 5 cut(s) 210, 1143, 1404, 1861, 1888
BccI CCATC 5 cut(s) 13, 131, 298, 1886, 1913
BceAI ACGGC 8 cut(s) 70, 101, 241, 385, 439, 504, 526, 662
BcgI CGANNNNNNTGC 4 cut(s) 364, 398, 1399, 1433
BciT130I CCWGG 3 cut(s) 1268, 1898, 2030
BclI TGATCA 1 cut(s) 3
BcnI CCSGG 4 cut(s) 97, 98, 315, 988
BcoDI GTCTC 2 cut(s) 199, 640
BfaI CTAG 6 cut(s) 681, 687, 744, 1323, 1335, 1521
BfoI RGCGCY 3 cut(s) 494, 680, 759
BmcAI AGTACT 1 cut(s) 1623
Bme1390I CCNGG 7 cut(s) 97, 98, 315, 988, 1268, 1898, 2030
Bme18I GGWCC 5 cut(s) 564, 1165, 1299, 1627, 1638
BmeT110I CYCGRG 2 cut(s) 96, 462
BmgT120I GGNCC 5 cut(s) 564, 1165, 1299, 1627, 1638
BmiI GGNNCC 9 cut(s) 12, 492, 516, 678, 727, 826, 1005, 1015, 1792
BmrFI CCNGG 7 cut(s) 97, 98, 315, 988, 1268, 1898, 2030
BmrI ACTGGG 2 cut(s) 58, 1236
BmsI GCATC 6 cut(s) 543, 948, 1309, 1429, 1606, 1789
BmuI ACTGGG 2 cut(s) 58, 1236
BoxI GACNNNNGTC 1 cut(s) 168
BpiI GAAGAC 1 cut(s) 78
BplI GAGNNNNNCTC 2 cut(s) 92, 124
BpmI CTGGAG 2 cut(s) 1362, 1872
Bpu14I TTCGAA 3 cut(s) 407, 533, 1602
BpuMI CCSGG 4 cut(s) 97, 98, 315, 988
Bsa29I ATCGAT 1 cut(s) 1450
BsaBI GATNNNNATC 2 cut(s) 507, 1125
BsaHI GRCGYC 6 cut(s) 213, 397, 426, 491, 677, 707
BsaJI CCNNGG 5 cut(s) 96, 314, 906, 1395, 1428
BsaWI WCCGGW 4 cut(s) 286, 511, 1444, 2021
BsaXI ACNNNNNCTCC 2 cut(s) 506, 536
Bsc4I CCNNNNNNNGG 3 cut(s) 315, 524, 1444
Bse118I RCCGGY 3 cut(s) 940, 1006, 2021
Bse1I ACTGG 4 cut(s) 53, 1231, 1629, 1850
Bse3DI GCAATG 2 cut(s) 1253, 1411
Bse8I GATNNNNATC 2 cut(s) 507, 1125
BseAI TCCGGA 2 cut(s) 511, 1444
BseBI CCWGG 3 cut(s) 1268, 1898, 2030
BseCI ATCGAT 1 cut(s) 1450
BseDI CCNNGG 5 cut(s) 96, 314, 906, 1395, 1428
BseGI GGATG 6 cut(s) 309, 696, 1050, 1324, 1420, 1621
BseJI GATNNNNATC 2 cut(s) 507, 1125
BseLI CCNNNNNNNGG 3 cut(s) 315, 524, 1444
BseMI GCAATG 2 cut(s) 1253, 1411
BseMII CTCAG 2 cut(s) 1479, 1798
BseNI ACTGG 4 cut(s) 53, 1231, 1629, 1850
BseRI GAGGAG 7 cut(s) 100, 130, 133, 187, 632, 1417, 1474
BseSI GKGCMC 1 cut(s) 123
BseX3I CGGCCG 1 cut(s) 597
BseXI GCAGC 5 cut(s) 210, 1143, 1404, 1861, 1888
Bsh1236I CGCG 2 cut(s) 311, 674
Bsh1285I CGRYCG 3 cut(s) 82, 600, 672
BshFI GGCC 6 cut(s) 57, 308, 365, 599, 1896, 1974
BshNI GGYRCC 3 cut(s) 490, 676, 1003
BshTI ACCGGT 1 cut(s) 2021
BshVI ATCGAT 1 cut(s) 1450
BsiEI CGRYCG 3 cut(s) 82, 600, 672
BsiHKCI CYCGRG 2 cut(s) 96, 462
BslFI GGGAC 4 cut(s) 65, 79, 1420, 1832
BslI CCNNNNNNNGG 3 cut(s) 315, 524, 1444
BsmAI GTCTC 2 cut(s) 199, 640
BsmBI CGTCTC 1 cut(s) 199
BsmFI GGGAC 4 cut(s) 65, 79, 1420, 1832
BsnI GGCC 6 cut(s) 57, 308, 365, 599, 1896, 1974
BsoBI CYCGRG 2 cut(s) 96, 462
Bsp119I TTCGAA 3 cut(s) 407, 533, 1602
Bsp1286I GDGCHC 2 cut(s) 123, 1292
Bsp13I TCCGGA 2 cut(s) 511, 1444
Bsp1407I TGTACA 1 cut(s) 1938
Bsp19I CCATGG 2 cut(s) 906, 1395
BspANI GGCC 6 cut(s) 57, 308, 365, 599, 1896, 1974
BspCNI CTCAG 2 cut(s) 1480, 1797
BspDI ATCGAT 1 cut(s) 1450
BspEI TCCGGA 2 cut(s) 511, 1444
BspFNI CGCG 2 cut(s) 311, 674
BspHI TCATGA 2 cut(s) 1282, 1858
BspLI GGNNCC 9 cut(s) 12, 492, 516, 678, 727, 826, 1005, 1015, 1792
BspPI GGATC 5 cut(s) 497, 503, 1134, 1217, 1455
BspQI GCTCTTC 1 cut(s) 1522
BspT104I TTCGAA 3 cut(s) 407, 533, 1602
BspT107I GGYRCC 3 cut(s) 490, 676, 1003
BsrBI CCGCTC 1 cut(s) 25
BsrDI GCAATG 2 cut(s) 1253, 1411
BsrFI RCCGGY 3 cut(s) 940, 1006, 2021
BsrGI TGTACA 1 cut(s) 1938
BsrI ACTGG 4 cut(s) 53, 1231, 1629, 1850
BssAI RCCGGY 3 cut(s) 940, 1006, 2021
BssECI CCNNGG 5 cut(s) 96, 314, 906, 1395, 1428
BssNI GRCGYC 6 cut(s) 213, 397, 426, 491, 677, 707
BssT1I CCWWGG 2 cut(s) 906, 1395
Bst2UI CCWGG 3 cut(s) 1268, 1898, 2030
Bst6I CTCTTC 3 cut(s) 23, 1522, 1828
BstACI GRCGYC 6 cut(s) 213, 397, 426, 491, 677, 707
BstAUI TGTACA 1 cut(s) 1938
BstBI TTCGAA 3 cut(s) 407, 533, 1602
BstC8I GCNNGC 4 cut(s) 228, 338, 1879, 1916
BstDEI CTNAG 3 cut(s) 1463, 1488, 1784
BstDSI CCRYGG 2 cut(s) 906, 1395
BstEII GGTNACC 2 cut(s) 1699, 1867
BstF5I GGATG 6 cut(s) 309, 696, 1050, 1324, 1420, 1621
BstFNI CGCG 2 cut(s) 311, 674
BstH2I RGCGCY 3 cut(s) 494, 680, 759
BstHHI GCGC 4 cut(s) 313, 493, 679, 758
BstMAI GTCTC 2 cut(s) 199, 640
BstMCI CGRYCG 3 cut(s) 82, 600, 672
BstNI CCWGG 3 cut(s) 1268, 1898, 2030
BstNSI RCATGY 1 cut(s) 1881
BstPAI GACNNNNGTC 1 cut(s) 168
BstPI GGTNACC 2 cut(s) 1699, 1867
BstSCI CCNGG 7 cut(s) 95, 96, 313, 986, 1266, 1896, 2028
BstSLI GKGCMC 1 cut(s) 123
BstUI CGCG 2 cut(s) 311, 674
BstV1I GCAGC 5 cut(s) 210, 1143, 1404, 1861, 1888
BstV2I GAAGAC 1 cut(s) 78
BstZI CGGCCG 1 cut(s) 597
Bsu15I ATCGAT 1 cut(s) 1450
BsuRI GGCC 6 cut(s) 57, 308, 365, 599, 1896, 1974
BsuTUI ATCGAT 1 cut(s) 1450
BtgI CCRYGG 2 cut(s) 906, 1395
BtsCI GGATG 6 cut(s) 309, 696, 1050, 1324, 1420, 1621
BtsIMutI CAGTG 1 cut(s) 630
Cac8I GCNNGC 4 cut(s) 228, 338, 1879, 1916
CaiI CAGNNNCTG 1 cut(s) 2072
CciI TCATGA 2 cut(s) 1282, 1858
CfoI GCGC 4 cut(s) 313, 493, 679, 758
Cfr10I RCCGGY 3 cut(s) 940, 1006, 2021
Cfr13I GGNCC 5 cut(s) 564, 1165, 1299, 1627, 1638
Cfr9I CCCGGG 1 cut(s) 96
ClaI ATCGAT 1 cut(s) 1450
CseI GACGC 4 cut(s) 181, 405, 415, 715
Csp6I GTAC 9 cut(s) 560, 847, 934, 1004, 1109, 1556, 1594, 1622, 1939
CspAI ACCGGT 1 cut(s) 2021
CviQI GTAC 9 cut(s) 560, 847, 934, 1004, 1109, 1556, 1594, 1622, 1939
DdeI CTNAG 3 cut(s) 1463, 1488, 1784
DinI GGCGCC 2 cut(s) 492, 678
DraI TTTAAA 1 cut(s) 1716
DrdI GACNNNNNNGTC 2 cut(s) 658, 1231
DseDI GACNNNNNNGTC 2 cut(s) 658, 1231
EaeI YGGCCR 4 cut(s) 306, 363, 597, 1894
EagI CGGCCG 1 cut(s) 597
Eam1104I CTCTTC 3 cut(s) 23, 1522, 1828
EarI CTCTTC 3 cut(s) 23, 1522, 1828
EciI GGCGGA 2 cut(s) 103, 226
EclXI CGGCCG 1 cut(s) 597
Eco130I CCWWGG 2 cut(s) 906, 1395
Eco24I GRGCYC 1 cut(s) 1292
Eco47I GGWCC 5 cut(s) 564, 1165, 1299, 1627, 1638
Eco52I CGGCCG 1 cut(s) 597
Eco57I CTGAAG 2 cut(s) 376, 1491
Eco88I CYCGRG 2 cut(s) 96, 462
Eco91I GGTNACC 2 cut(s) 1699, 1867
EcoO65I GGTNACC 2 cut(s) 1699, 1867
EcoRI GAATTC 2 cut(s) 535, 1562
EcoRII CCWGG 3 cut(s) 1266, 1896, 2028
EcoT14I CCWWGG 2 cut(s) 906, 1395
EcoT38I GRGCYC 1 cut(s) 1292
EgeI GGCGCC 2 cut(s) 492, 678
EheI GGCGCC 2 cut(s) 492, 678
ErhI CCWWGG 2 cut(s) 906, 1395
Esp3I CGTCTC 1 cut(s) 199
FalI AAGNNNNNCTT 2 cut(s) 1298, 1330
FaqI GGGAC 4 cut(s) 65, 79, 1420, 1832
FauI CCCGC 1 cut(s) 1422
FbaI TGATCA 1 cut(s) 3
FblI GTMKAC 1 cut(s) 767
FokI GGATG 6 cut(s) 316, 703, 1057, 1331, 1407, 1628
FriOI GRGCYC 1 cut(s) 1292
FspBI CTAG 6 cut(s) 681, 687, 744, 1323, 1335, 1521
GlaI GCGC 4 cut(s) 312, 492, 678, 757
GsuI CTGGAG 2 cut(s) 1362, 1872
HaeII RGCGCY 3 cut(s) 494, 680, 759
HaeIII GGCC 6 cut(s) 57, 308, 365, 599, 1896, 1974
HgaI GACGC 4 cut(s) 181, 405, 415, 715
HhaI GCGC 4 cut(s) 313, 493, 679, 758
Hin1I GRCGYC 6 cut(s) 213, 397, 426, 491, 677, 707
Hin6I GCGC 4 cut(s) 311, 491, 677, 756
HinP1I GCGC 4 cut(s) 311, 491, 677, 756
HincII GTYRAC 2 cut(s) 768, 976
HindII GTYRAC 2 cut(s) 768, 976
HindIII AAGCTT 2 cut(s) 588, 1805
HinfI GANTC 6 cut(s) 92, 105, 521, 1273, 2002, 2050
HphI GGTGA 6 cut(s) 276, 769, 958, 967, 1711, 1861
Hpy166II GTNNAC 7 cut(s) 768, 777, 841, 976, 1109, 1594, 1843
Hpy8I GTNNAC 7 cut(s) 768, 777, 841, 976, 1109, 1594, 1843
HpyCH4IV ACGT 3 cut(s) 35, 213, 659
HpyCH4V TGCA 7 cut(s) 349, 1258, 1420, 1619, 1749, 1877, 1946
HpyF3I CTNAG 3 cut(s) 1463, 1488, 1784
HpySE526I ACGT 3 cut(s) 35, 213, 659
Hsp92I GRCGYC 6 cut(s) 213, 397, 426, 491, 677, 707
HspAI GCGC 4 cut(s) 311, 491, 677, 756
KasI GGCGCC 2 cut(s) 490, 676
Kpn2I TCCGGA 2 cut(s) 511, 1444
KpnI GGTACC 1 cut(s) 1007
Ksp22I TGATCA 1 cut(s) 3
LguI GCTCTTC 1 cut(s) 1522
LmnI GCTCC 6 cut(s) 10, 22, 514, 1013, 1243, 1796
Lsp1109I GCAGC 5 cut(s) 210, 1143, 1404, 1861, 1888
LweI GCATC 6 cut(s) 543, 948, 1309, 1429, 1606, 1789
MaeI CTAG 6 cut(s) 681, 687, 744, 1323, 1335, 1521
MaeII ACGT 3 cut(s) 35, 213, 659
MaeIII GTNAC 6 cut(s) 282, 439, 1699, 1741, 1867, 2032
MbiI CCGCTC 1 cut(s) 25
MhlI GDGCHC 2 cut(s) 123, 1292
MlsI TGGCCA 2 cut(s) 365, 1896
MluNI TGGCCA 2 cut(s) 365, 1896
Mly113I GGCGCC 2 cut(s) 491, 677
MlyI GAGTC 2 cut(s) 101, 530
MmeI TCCRAC 2 cut(s) 171, 845
Mox20I TGGCCA 2 cut(s) 365, 1896
MroI TCCGGA 2 cut(s) 511, 1444
MscI TGGCCA 2 cut(s) 365, 1896
MseI TTAA 6 cut(s) 807, 1715, 1961, 1986, 2063, 2077
MslI CAYNNNNRTG 3 cut(s) 302, 1361, 1614
Msp20I TGGCCA 2 cut(s) 365, 1896
MspA1I CMGCKG 4 cut(s) 1156, 1417, 1788, 1874
MspR9I CCNGG 7 cut(s) 97, 98, 315, 988, 1268, 1898, 2030
MvaI CCWGG 3 cut(s) 1268, 1898, 2030
MvnI CGCG 2 cut(s) 311, 674
NarI GGCGCC 2 cut(s) 491, 677
NciI CCSGG 4 cut(s) 97, 98, 315, 988
NcoI CCATGG 2 cut(s) 906, 1395
NlaIV GGNNCC 9 cut(s) 12, 492, 516, 678, 727, 826, 1005, 1015, 1792
NmeAIII GCCGAG 2 cut(s) 277, 575
NmuCI GTSAC 3 cut(s) 282, 1699, 1867
NspI RCATGY 1 cut(s) 1881
NspV TTCGAA 3 cut(s) 407, 533, 1602
PaeI GCATGC 1 cut(s) 1881
PagI TCATGA 2 cut(s) 1282, 1858
PciSI GCTCTTC 1 cut(s) 1522
PcsI WCGNNNNNNNCGW 8 cut(s) 60, 72, 189, 275, 530, 539, 545, 665
PfeI GAWTC 4 cut(s) 105, 1273, 2002, 2050
PflFI GACNNNGTC 3 cut(s) 383, 1352, 1547
PinAI ACCGGT 1 cut(s) 2021
Ple19I CGATCG 1 cut(s) 672
PleI GAGTC 2 cut(s) 100, 529
PluTI GGCGCC 2 cut(s) 494, 680
PpsI GAGTC 2 cut(s) 100, 529
PshAI GACNNNNGTC 1 cut(s) 168
Psp6I CCWGG 3 cut(s) 1266, 1896, 2028
PspEI GGTNACC 2 cut(s) 1699, 1867
PspGI CCWGG 3 cut(s) 1266, 1896, 2028
PspN4I GGNNCC 9 cut(s) 12, 492, 516, 678, 727, 826, 1005, 1015, 1792
PspPI GGNCC 5 cut(s) 564, 1165, 1299, 1627, 1638
PstNI CAGNNNCTG 1 cut(s) 2072
PsyI GACNNNGTC 3 cut(s) 383, 1352, 1547
PvuI CGATCG 1 cut(s) 672
RgaI GCGATCGC 1 cut(s) 672
RsaI GTAC 9 cut(s) 561, 848, 935, 1005, 1110, 1557, 1595, 1623, 1940
RsaNI GTAC 9 cut(s) 560, 847, 934, 1004, 1109, 1556, 1594, 1622, 1939
RseI CAYNNNNRTG 3 cut(s) 302, 1361, 1614
SalI GTCGAC 1 cut(s) 766
SapI GCTCTTC 1 cut(s) 1522
SaqAI TTAA 6 cut(s) 807, 1715, 1961, 1986, 2063, 2077
Sau96I GGNCC 5 cut(s) 564, 1165, 1299, 1627, 1638
ScaI AGTACT 1 cut(s) 1623
SchI GAGTC 2 cut(s) 101, 530
ScrFI CCNGG 7 cut(s) 97, 98, 315, 988, 1268, 1898, 2030
SduI GDGCHC 2 cut(s) 123, 1292
SfaAI GCGATCGC 1 cut(s) 672
SfaNI GCATC 6 cut(s) 543, 948, 1309, 1429, 1606, 1789
SfoI GGCGCC 2 cut(s) 492, 678
SfuI TTCGAA 3 cut(s) 407, 533, 1602
SgfI GCGATCGC 1 cut(s) 672
SgrAI CRCCGGYG 1 cut(s) 940
SinI GGWCC 5 cut(s) 564, 1165, 1299, 1627, 1638
SmaI CCCGGG 1 cut(s) 98
SmiMI CAYNNNNRTG 3 cut(s) 302, 1361, 1614
SphI GCATGC 1 cut(s) 1881
SspDI GGCGCC 2 cut(s) 490, 676
SspMI CTAG 6 cut(s) 681, 687, 744, 1323, 1335, 1521
StyD4I CCNGG 7 cut(s) 95, 96, 313, 986, 1266, 1896, 2028
StyI CCWWGG 2 cut(s) 906, 1395
TaiI ACGT 3 cut(s) 38, 216, 662
TatI WGTACW 4 cut(s) 1108, 1593, 1621, 1938
TfiI GAWTC 4 cut(s) 105, 1273, 2002, 2050
Tru1I TTAA 6 cut(s) 807, 1715, 1961, 1986, 2063, 2077
Tru9I TTAA 6 cut(s) 807, 1715, 1961, 1986, 2063, 2077
TscAI CASTG 1 cut(s) 637
TseFI GTSAC 3 cut(s) 282, 1699, 1867
TseI GCWGC 5 cut(s) 223, 1156, 1417, 1874, 1901
Tsp45I GTSAC 3 cut(s) 282, 1699, 1867
TspDTI ATGAA 7 cut(s) 59, 823, 1319, 1349, 1650, 1847, 1875
TspGWI ACGGA 4 cut(s) 190, 735, 785, 916
TspMI CCCGGG 1 cut(s) 96
TspRI CASTG 1 cut(s) 637
Tth111I GACNNNGTC 3 cut(s) 383, 1352, 1547
VpaK11BI GGWCC 5 cut(s) 564, 1165, 1299, 1627, 1638
XapI RAATTY 2 cut(s) 535, 1562
XceI RCATGY 1 cut(s) 1881
XmaI CCCGGG 1 cut(s) 96
XmiI GTMKAC 1 cut(s) 767
XspI CTAG 6 cut(s) 681, 687, 744, 1323, 1335, 1521
ZraI GACGTC 1 cut(s) 214
ZrmI AGTACT 1 cut(s) 1623
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.