Rh3BG152000

WD repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0012301
Physical Location & Seq
Forward (+)
12959383 .. 12963683
4301 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG152000.1

Sequence Viewer

Length: 2052 bp
ATGATCATGGAGCCGAAGATGGAGAGGAAGAGGACGTTCGCTATGAACTGGGACGGCCTCCACGACGAAGAAGACGACGACCGCTTCTTCGAGTCCCGGGAGAGAATCTCCTCCGCCGTGCCTATCGACCTCGAAGCCTCCTCCTCCGACGATGAGGACTTCGACGACAGTCGTATGTCCTTCGCCTCCTGCGTCTCCTCCGTCCGAAACGACGTCGAGGTGCTGCGAGCCTTGTCCGCCGCCGAGCCGTCCTTCGCCTCGTCGCCTCCGATGTCACCGGACTACAACATCTGGATGGCCGCGCCGGGGTCGATCTCCGAACGCCGCAGGCGGTTGTTGCAGGGCATGGGATTGGCCAACGGCGGCAAAGACATCGTCAGCTTCAGACGCCTCGTTTCGAATAAAGCCCCAAACGGCGTCTTTCCGGCCGTTACGAGTTGCCCTACTCGCTCTCGGGAAAAGATACAAGTTCCCGAAACAGCGCCCGAACCCGATCCCGATCCGGAGCCAGAGTCGGGGGCTTCGAATTCGCCTTTGCCGATGATGCTTGTACGGTCCAGATCGGAAGGAGAGATCGAAGCTTTCTCGGCCGATAAACGAAGGAAAGAGCAGGTAATTGGCACTGTCTCGAAACAACGGCTGACAAGAACGTCGTCGGCGATCGCGGCTCCTAGCTCTAGGATGTGTTTTTCCACGACGCCTCAAAGCGACGTGGGAACCAAGACCGTCCGATCTAGGCAAAACAGCGCCGCATTGTCGACGGAGTTCACCAACAATTTAGGGGCGTTCTTCTTGATTAAAAATCTGGACACGGGAACCGAGTTCATTGTGAACGAGTACGATCAAAACGGGTGTTGGAACAAGTTTAGTGATCTCCAAACGGGGAAGAAATTGACCGTGGACGAGTTTGAGAAGTCCGTCGGGTACTCGCCGGTGGTGAAGGAGGTGATGCGGCGGCAAAATGTCAACATTGAAGCCGGGATTGAGAGGAAGGTACCGGCAGGAGCCAATTCGTTTGTGTCAAAGAGTTTGAGGATGAGCAAGAGAAAGGTGGCTCTTTTGAAGAATAGCATAAAAGGTGTGGGAAGTGCTGTGAGTGTACTAATTGGGGATAAGGATCAACACGCCTCGTCGCCGCCTCCTCCGCTGCCGCAGGACCAGAAATCAAGCAAGGCTAATTCGGGGTCTGGTTCGGAGTGGATCAAAGTTAGGCAGACTGGGAAGTCATATAAGGAGCTATCAGCATTGCATTTGTGCCAGGAGATTCAGGCTCATGAGGGCTCAATTTGGACCATCAAGTTTAGCTTGGATGCTAGATTTCTTGCTAGTGCTGGAGAGGACAGGGTCATTCATGTATGGGAAGTTCAAGAATGTGAGATTATGTCCATGGATAGCAATGCGAACCCGCTGCATCCCTCCTCGGTGTCCCCATATCCGGATCGATCAATGTGTCTTAGCTCTGAAGCTTCAATTTCCTCTGAGAAGAAGAAGAAGGGGAAGGGAGGCTCTTCTAGGAAAACTAATCCCATTCCTGACTATGTCCATGTACCCGAATTCGTGTTTGCCCTCTCGGAGAAACCTGTGTGCTCTTTCGAAGGTCATTTGGATGCAGTACTGGACCTGTCATGGTCCAGAGATCAGCTATTGCTTTCATCTTCAATGGACAAAACTGTTAGATTATGGGATATGGTGACCAAGAGTTGTTTAAAGATGTTTGCCCACAATGATTATGTAACTTGCATACAGTTCAATCCATTGGACGACAGTGTTTTTCTCAGCGGCTCCCTTGATGCGAAGCTTCGATTATGGGACATATCTGATCGAAGAGTGGTGGACTGGACTGATCTTCATGAAATGGTCACCGCTGCATGCTATACTCCAGATGGCCAGGCTGCCATCATTGGCTCGCACAAAGGGAACTGTCGTATGTACAATGCAGAAGGTACGAGTCTTTCATACATAGTATATTCATTGGACAACCCTGCAGAACTTTATTCTAGTTTAAATATGTTCATACAGACAGTCTATAATAAGGCTCATCTTGTTTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WD40

Protein Analysis

683

Amino Acids

75.63

Weight (kDa)

6.04

Isoelectric Point (pI)

54.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_THOC3 PF25174 414 - 461 2.9e-07 THOC3 beta-propeller domain
WD40 PF00400 419 - 453 5.2e-06 WD domain, G-beta repeat
Beta-prop_WDR3_2nd PF25172 524 - 645 2.4e-10 WDR3 second beta-propeller domain
Beta-prop_WDR3_1st PF25173 525 - 645 2.6e-17 WDR3 first beta-propeller domain
WD40_Prp19 PF24814 525 - 648 1.1e-14 Prp19 WD40 domain
Beta-prop_WDR36-Utp21_2nd PF25168 525 - 588 1.3e-08 WDR36/Utp21 second beta-propeller domain
WD40 PF00400 526 - 562 4.6e-08 WD domain, G-beta repeat
Beta-prop_WDR5 PF25175 526 - 655 5.9e-25 WDR5 beta-propeller domain
WD40_CDC20-Fz PF24807 527 - 637 1.2e-11 CDC20/Fizzy WD40 domain
EIF3I PF24805 528 - 647 6.9e-06 EIF3I
Beta-prop_THOC3 PF25174 529 - 571 1.1e-06 THOC3 beta-propeller domain
Beta-prop_CAF1B_HIR1 PF24105 531 - 611 1e-10 CAF1B/HIR1 beta-propeller domain
Beta-prop_IFT122_1st PF23381 531 - 649 2.8e-07 IFT122 first beta-propeller
Beta-prop_THOC3 PF25174 534 - 647 6.7e-17 THOC3 beta-propeller domain
WDR55 PF24796 534 - 647 1.2e-07 WDR55
Beta-prop_Aladin PF25460 536 - 644 1.2e-09 Aladin seven-bladed propeller
WD40_Gbeta PF25391 545 - 660 3.6e-11 G protein beta WD-40 repeat protein
Beta-prop_WDR90_POC16_2nd PF23393 549 - 651 7.6e-08 WDR90/POC16, second beta-propeller
Beta-prop_EML_2 PF23414 589 - 648 5.1e-07 Echinoderm microtubule-associated protein second beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0012301)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37670 AT2G37670 AT5G02430
fragaria_vesca FvH4_6g13960
malus_domestica MD04G1127300.v1.1 MD12G1140500.v1.1
prunus_persica Prupe.6G253900_v2.0.a1 Prupe.6G253900_v2.0.a1
pyrus_communis pycom04g11410
rosa_chinensis RchiOBHm_Chr3g0466781
rosa_laevigata RLG00000024553
rosa_multiflora Rmu_sc0008017.1_g000009
rosa_roxburghii Rroxscaffold_6G00414170
rosa_rugosa Rorug03G0083800
rosa_samantha Rh3AG131000 Rh3BG152000 Rh3CG151900 Rh3DG152700
rosa_wichuraiana Rw3G012380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 649, 1222
AatII GACGTC 1 cut(s) 216
Acc36I ACCTGC 1 cut(s) 601
Acc65I GGTACC 1 cut(s) 994
AccB1I GGYRCC 1 cut(s) 994
AccI GTMKAC 1 cut(s) 758
AccII CGCG 2 cut(s) 302, 665
AccIII TCCGGA 2 cut(s) 502, 1435
AclWI GGATC 5 cut(s) 488, 494, 1125, 1208, 1446
AcoI YGGCCR 5 cut(s) 297, 354, 426, 588, 1885
AcsI RAATTY 2 cut(s) 526, 1553
AcuI CTGAAG 2 cut(s) 367, 1482
AcyI GRCGYC 4 cut(s) 213, 388, 417, 698
AfaI GTAC 9 cut(s) 552, 839, 926, 996, 1101, 1548, 1614, 1931, 1945
AfiI CCNNNNNNNGG 3 cut(s) 306, 515, 1435
AgsI TTSAA 6 cut(s) 974, 1063, 1367, 1470, 1659, 1750
AjiI CACGTC 1 cut(s) 712
AjnI CCWGG 2 cut(s) 1257, 1887
AluBI AGCT 9 cut(s) 381, 581, 675, 1237, 1305, 1458, 1466, 1642, 1798
AluI AGCT 9 cut(s) 381, 581, 675, 1237, 1305, 1458, 1466, 1642, 1798
Alw21I GWGCWC 1 cut(s) 1589
Alw26I GTCTC 2 cut(s) 199, 631
AlwI GGATC 5 cut(s) 488, 494, 1125, 1208, 1446
Ama87I CYCGRG 2 cut(s) 96, 453
Aor13HI TCCGGA 2 cut(s) 502, 1435
AoxI GGCC 6 cut(s) 55, 297, 354, 426, 588, 1885
ApeKI GCWGC 5 cut(s) 223, 1147, 1408, 1865, 1892
ApoI RAATTY 2 cut(s) 526, 1553
ArsI GACNNNNNNTTYG 4 cut(s) 71, 103, 360, 392
AsiSI GCGATCGC 1 cut(s) 663
Asp718I GGTACC 1 cut(s) 994
AspLEI GCGC 3 cut(s) 304, 484, 749
AspS9I GGNCC 5 cut(s) 555, 1156, 1290, 1618, 1629
AsuC2I CCSGG 4 cut(s) 97, 98, 306, 979
AsuHPI GGTGA 6 cut(s) 267, 760, 949, 958, 1702, 1852
AsuII TTCGAA 3 cut(s) 398, 524, 1593
AvaI CYCGRG 2 cut(s) 96, 453
AvaII GGWCC 5 cut(s) 555, 1156, 1290, 1618, 1629
BalI TGGCCA 2 cut(s) 356, 1887
BanI GGYRCC 1 cut(s) 994
BanII GRGCYC 1 cut(s) 1283
BbsI GAAGAC 1 cut(s) 78
Bbv12I GWGCWC 1 cut(s) 1589
BbvI GCAGC 5 cut(s) 210, 1134, 1395, 1852, 1879
BccI CCATC 5 cut(s) 13, 289, 1301, 1877, 1904
BceAI ACGGC 7 cut(s) 70, 101, 232, 376, 413, 430, 653
BcgI CGANNNNNNTGC 4 cut(s) 355, 389, 1390, 1424
BciT130I CCWGG 2 cut(s) 1259, 1889
BclI TGATCA 1 cut(s) 3
BcnI CCSGG 4 cut(s) 97, 98, 306, 979
BcoDI GTCTC 2 cut(s) 199, 631
BfaI CTAG 7 cut(s) 672, 678, 735, 1314, 1326, 1512, 1998
BfmI CTRYAG 1 cut(s) 1983
BfoI RGCGCY 2 cut(s) 485, 750
BfuAI ACCTGC 1 cut(s) 601
BmcAI AGTACT 1 cut(s) 1614
Bme1390I CCNGG 6 cut(s) 97, 98, 306, 979, 1259, 1889
Bme18I GGWCC 5 cut(s) 555, 1156, 1290, 1618, 1629
BmeT110I CYCGRG 2 cut(s) 96, 453
BmgBI CACGTC 1 cut(s) 712
BmgT120I GGNCC 5 cut(s) 555, 1156, 1290, 1618, 1629
BmiI GGNNCC 8 cut(s) 12, 507, 669, 718, 817, 996, 1006, 1783
BmrFI CCNGG 6 cut(s) 97, 98, 306, 979, 1259, 1889
BmrI ACTGGG 2 cut(s) 58, 1227
BmsI GCATC 6 cut(s) 534, 939, 1300, 1420, 1597, 1780
BmuI ACTGGG 2 cut(s) 58, 1227
BoxI GACNNNNGTC 1 cut(s) 168
BpiI GAAGAC 1 cut(s) 78
BplI GAGNNNNNCTC 2 cut(s) 92, 124
BpmI CTGGAG 2 cut(s) 1353, 1863
Bpu14I TTCGAA 3 cut(s) 398, 524, 1593
BpuMI CCSGG 4 cut(s) 97, 98, 306, 979
Bsa29I ATCGAT 1 cut(s) 1441
BsaBI GATNNNNATC 2 cut(s) 498, 1116
BsaHI GRCGYC 4 cut(s) 213, 388, 417, 698
BsaJI CCNNGG 5 cut(s) 96, 305, 897, 1386, 1419
BsaWI WCCGGW 3 cut(s) 277, 502, 1435
BsaXI ACNNNNNCTCC 2 cut(s) 497, 527
Bsc4I CCNNNNNNNGG 3 cut(s) 306, 515, 1435
Bse118I RCCGGY 2 cut(s) 931, 997
Bse1I ACTGG 4 cut(s) 53, 1222, 1620, 1841
Bse3DI GCAATG 2 cut(s) 1244, 1402
Bse8I GATNNNNATC 2 cut(s) 498, 1116
BseAI TCCGGA 2 cut(s) 502, 1435
BseBI CCWGG 2 cut(s) 1259, 1889
BseCI ATCGAT 1 cut(s) 1441
BseDI CCNNGG 5 cut(s) 96, 305, 897, 1386, 1419
BseGI GGATG 6 cut(s) 300, 687, 1041, 1315, 1411, 1612
BseJI GATNNNNATC 2 cut(s) 498, 1116
BseLI CCNNNNNNNGG 3 cut(s) 306, 515, 1435
BseMI GCAATG 2 cut(s) 1244, 1402
BseMII CTCAG 2 cut(s) 1470, 1789
BseNI ACTGG 4 cut(s) 53, 1222, 1620, 1841
BseRI GAGGAG 6 cut(s) 100, 130, 133, 187, 1131, 1408
BseX3I CGGCCG 2 cut(s) 426, 588
BseXI GCAGC 5 cut(s) 210, 1134, 1395, 1852, 1879
Bsh1236I CGCG 2 cut(s) 302, 665
Bsh1285I CGRYCG 4 cut(s) 82, 429, 591, 663
BshFI GGCC 6 cut(s) 57, 299, 356, 428, 590, 1887
BshNI GGYRCC 1 cut(s) 994
BshVI ATCGAT 1 cut(s) 1441
BsiEI CGRYCG 4 cut(s) 82, 429, 591, 663
BsiHKAI GWGCWC 1 cut(s) 1589
BsiHKCI CYCGRG 2 cut(s) 96, 453
BsiSI CCGG 9 cut(s) 97, 278, 305, 425, 503, 932, 978, 998, 1436
BslFI GGGAC 4 cut(s) 65, 79, 1411, 1823
BslI CCNNNNNNNGG 3 cut(s) 306, 515, 1435
BsmAI GTCTC 2 cut(s) 199, 631
BsmBI CGTCTC 1 cut(s) 199
BsmFI GGGAC 4 cut(s) 65, 79, 1411, 1823
BsnI GGCC 6 cut(s) 57, 299, 356, 428, 590, 1887
BsoBI CYCGRG 2 cut(s) 96, 453
Bsp119I TTCGAA 3 cut(s) 398, 524, 1593
Bsp1286I GDGCHC 2 cut(s) 1283, 1589
Bsp13I TCCGGA 2 cut(s) 502, 1435
Bsp1407I TGTACA 1 cut(s) 1929
Bsp19I CCATGG 1 cut(s) 1386
BspANI GGCC 6 cut(s) 57, 299, 356, 428, 590, 1887
BspCNI CTCAG 2 cut(s) 1471, 1788
BspDI ATCGAT 1 cut(s) 1441
BspEI TCCGGA 2 cut(s) 502, 1435
BspFNI CGCG 2 cut(s) 302, 665
BspHI TCATGA 2 cut(s) 1273, 1849
BspLI GGNNCC 8 cut(s) 12, 507, 669, 718, 817, 996, 1006, 1783
BspMAI CTGCAG 1 cut(s) 1987
BspMI ACCTGC 1 cut(s) 601
BspPI GGATC 5 cut(s) 488, 494, 1125, 1208, 1446
BspQI GCTCTTC 1 cut(s) 1513
BspT104I TTCGAA 3 cut(s) 398, 524, 1593
BspT107I GGYRCC 1 cut(s) 994
BsrDI GCAATG 2 cut(s) 1244, 1402
BsrFI RCCGGY 2 cut(s) 931, 997
BsrGI TGTACA 1 cut(s) 1929
BsrI ACTGG 4 cut(s) 53, 1222, 1620, 1841
BssAI RCCGGY 2 cut(s) 931, 997
BssECI CCNNGG 5 cut(s) 96, 305, 897, 1386, 1419
BssNI GRCGYC 4 cut(s) 213, 388, 417, 698
BssT1I CCWWGG 1 cut(s) 1386
Bst2UI CCWGG 2 cut(s) 1259, 1889
Bst6I CTCTTC 3 cut(s) 23, 1513, 1819
BstACI GRCGYC 4 cut(s) 213, 388, 417, 698
BstAUI TGTACA 1 cut(s) 1929
BstBI TTCGAA 3 cut(s) 398, 524, 1593
BstC8I GCNNGC 4 cut(s) 228, 329, 1870, 1907
BstDEI CTNAG 3 cut(s) 1454, 1479, 1775
BstDSI CCRYGG 2 cut(s) 897, 1386
BstEII GGTNACC 2 cut(s) 1690, 1858
BstF5I GGATG 6 cut(s) 300, 687, 1041, 1315, 1411, 1612
BstFNI CGCG 2 cut(s) 302, 665
BstH2I RGCGCY 2 cut(s) 485, 750
BstHHI GCGC 3 cut(s) 304, 484, 749
BstMAI GTCTC 2 cut(s) 199, 631
BstMCI CGRYCG 4 cut(s) 82, 429, 591, 663
BstMWI GCNNNNNNNGC 8 cut(s) 236, 337, 387, 447, 544, 587, 665, 1144
BstNI CCWGG 2 cut(s) 1259, 1889
BstNSI RCATGY 1 cut(s) 1872
BstPAI GACNNNNGTC 1 cut(s) 168
BstPI GGTNACC 2 cut(s) 1690, 1858
BstSCI CCNGG 6 cut(s) 95, 96, 304, 977, 1257, 1887
BstSFI CTRYAG 1 cut(s) 1983
BstUI CGCG 2 cut(s) 302, 665
BstV1I GCAGC 5 cut(s) 210, 1134, 1395, 1852, 1879
BstV2I GAAGAC 1 cut(s) 78
BstZI CGGCCG 2 cut(s) 426, 588
Bsu15I ATCGAT 1 cut(s) 1441
BsuRI GGCC 6 cut(s) 57, 299, 356, 428, 590, 1887
BsuTUI ATCGAT 1 cut(s) 1441
BtgI CCRYGG 2 cut(s) 897, 1386
BtrI CACGTC 1 cut(s) 712
BtsCI GGATG 6 cut(s) 300, 687, 1041, 1315, 1411, 1612
BtsIMutI CAGTG 2 cut(s) 621, 1771
BveI ACCTGC 1 cut(s) 601
Cac8I GCNNGC 4 cut(s) 228, 329, 1870, 1907
CciI TCATGA 2 cut(s) 1273, 1849
CfoI GCGC 3 cut(s) 304, 484, 749
Cfr10I RCCGGY 2 cut(s) 931, 997
Cfr13I GGNCC 5 cut(s) 555, 1156, 1290, 1618, 1629
Cfr9I CCCGGG 1 cut(s) 96
ClaI ATCGAT 1 cut(s) 1441
CseI GACGC 4 cut(s) 181, 396, 406, 706
Csp6I GTAC 9 cut(s) 551, 838, 925, 995, 1100, 1547, 1613, 1930, 1944
CviAII CATG 9 cut(s) 7, 346, 1274, 1352, 1387, 1544, 1626, 1850, 1869
CviQI GTAC 9 cut(s) 551, 838, 925, 995, 1100, 1547, 1613, 1930, 1944
DdeI CTNAG 3 cut(s) 1454, 1479, 1775
DraI TTTAAA 2 cut(s) 1707, 2004
DrdI GACNNNNNNGTC 2 cut(s) 649, 1222
DseDI GACNNNNNNGTC 2 cut(s) 649, 1222
EaeI YGGCCR 5 cut(s) 297, 354, 426, 588, 1885
EagI CGGCCG 2 cut(s) 426, 588
Eam1104I CTCTTC 3 cut(s) 23, 1513, 1819
EarI CTCTTC 3 cut(s) 23, 1513, 1819
EciI GGCGGA 2 cut(s) 103, 226
EclXI CGGCCG 2 cut(s) 426, 588
Eco130I CCWWGG 1 cut(s) 1386
Eco24I GRGCYC 1 cut(s) 1283
Eco47I GGWCC 5 cut(s) 555, 1156, 1290, 1618, 1629
Eco52I CGGCCG 2 cut(s) 426, 588
Eco57I CTGAAG 2 cut(s) 367, 1482
Eco88I CYCGRG 2 cut(s) 96, 453
Eco91I GGTNACC 2 cut(s) 1690, 1858
EcoO65I GGTNACC 2 cut(s) 1690, 1858
EcoRI GAATTC 2 cut(s) 526, 1553
EcoRII CCWGG 2 cut(s) 1257, 1887
EcoT14I CCWWGG 1 cut(s) 1386
EcoT38I GRGCYC 1 cut(s) 1283
ErhI CCWWGG 1 cut(s) 1386
Esp3I CGTCTC 1 cut(s) 199
FaeI CATG 9 cut(s) 10, 349, 1277, 1355, 1390, 1547, 1629, 1853, 1872
FalI AAGNNNNNCTT 2 cut(s) 1289, 1321
FaqI GGGAC 4 cut(s) 65, 79, 1411, 1823
FatI CATG 9 cut(s) 6, 345, 1273, 1351, 1386, 1543, 1625, 1849, 1868
FauI CCCGC 1 cut(s) 1413
FbaI TGATCA 1 cut(s) 3
FblI GTMKAC 1 cut(s) 758
FokI GGATG 6 cut(s) 307, 694, 1048, 1322, 1398, 1619
FriOI GRGCYC 1 cut(s) 1283
FspBI CTAG 7 cut(s) 672, 678, 735, 1314, 1326, 1512, 1998
GlaI GCGC 3 cut(s) 303, 483, 748
GsuI CTGGAG 2 cut(s) 1353, 1863
HaeII RGCGCY 2 cut(s) 485, 750
HaeIII GGCC 6 cut(s) 57, 299, 356, 428, 590, 1887
HapII CCGG 9 cut(s) 97, 278, 305, 425, 503, 932, 978, 998, 1436
HgaI GACGC 4 cut(s) 181, 396, 406, 706
HhaI GCGC 3 cut(s) 304, 484, 749
Hin1I GRCGYC 4 cut(s) 213, 388, 417, 698
Hin1II CATG 9 cut(s) 10, 349, 1277, 1355, 1390, 1547, 1629, 1853, 1872
Hin6I GCGC 3 cut(s) 302, 482, 747
HinP1I GCGC 3 cut(s) 302, 482, 747
HincII GTYRAC 2 cut(s) 759, 967
HindII GTYRAC 2 cut(s) 759, 967
HindIII AAGCTT 3 cut(s) 579, 1464, 1796
HinfI GANTC 5 cut(s) 92, 105, 512, 1264, 1948
HpaII CCGG 9 cut(s) 97, 278, 305, 425, 503, 932, 978, 998, 1436
HphI GGTGA 6 cut(s) 267, 760, 949, 958, 1702, 1852
Hpy166II GTNNAC 7 cut(s) 759, 768, 832, 901, 967, 1100, 1834
Hpy8I GTNNAC 7 cut(s) 759, 768, 832, 901, 967, 1100, 1834
HpyCH4IV ACGT 4 cut(s) 35, 213, 650, 711
HpyCH4V TGCA 8 cut(s) 340, 1249, 1411, 1610, 1740, 1868, 1937, 1985
HpyF10VI GCNNNNNNNGC 8 cut(s) 236, 337, 387, 447, 544, 587, 665, 1144
HpyF3I CTNAG 3 cut(s) 1454, 1479, 1775
HpySE526I ACGT 4 cut(s) 35, 213, 650, 711
Hsp92I GRCGYC 4 cut(s) 213, 388, 417, 698
Hsp92II CATG 9 cut(s) 10, 349, 1277, 1355, 1390, 1547, 1629, 1853, 1872
HspAI GCGC 3 cut(s) 302, 482, 747
Kpn2I TCCGGA 2 cut(s) 502, 1435
KpnI GGTACC 1 cut(s) 998
Ksp22I TGATCA 1 cut(s) 3
LguI GCTCTTC 1 cut(s) 1513
LmnI GCTCC 6 cut(s) 10, 505, 673, 1004, 1234, 1787
Lsp1109I GCAGC 5 cut(s) 210, 1134, 1395, 1852, 1879
LweI GCATC 6 cut(s) 534, 939, 1300, 1420, 1597, 1780
MaeI CTAG 7 cut(s) 672, 678, 735, 1314, 1326, 1512, 1998
MaeII ACGT 4 cut(s) 35, 213, 650, 711
MaeIII GTNAC 5 cut(s) 273, 430, 1690, 1732, 1858
MhlI GDGCHC 2 cut(s) 1283, 1589
MlsI TGGCCA 2 cut(s) 356, 1887
MluNI TGGCCA 2 cut(s) 356, 1887
MlyI GAGTC 3 cut(s) 101, 521, 1957
MmeI TCCRAC 2 cut(s) 171, 836
Mox20I TGGCCA 2 cut(s) 356, 1887
MroI TCCGGA 2 cut(s) 502, 1435
MscI TGGCCA 2 cut(s) 356, 1887
MseI TTAA 3 cut(s) 798, 1706, 2003
MslI CAYNNNNRTG 2 cut(s) 293, 1605
Msp20I TGGCCA 2 cut(s) 356, 1887
MspA1I CMGCKG 4 cut(s) 1147, 1408, 1779, 1865
MspI CCGG 9 cut(s) 97, 278, 305, 425, 503, 932, 978, 998, 1436
MspR9I CCNGG 6 cut(s) 97, 98, 306, 979, 1259, 1889
MvaI CCWGG 2 cut(s) 1259, 1889
MvnI CGCG 2 cut(s) 302, 665
MwoI GCNNNNNNNGC 8 cut(s) 236, 337, 387, 447, 544, 587, 665, 1144
NciI CCSGG 4 cut(s) 97, 98, 306, 979
NcoI CCATGG 1 cut(s) 1386
NlaIII CATG 9 cut(s) 10, 349, 1277, 1355, 1390, 1547, 1629, 1853, 1872
NlaIV GGNNCC 8 cut(s) 12, 507, 669, 718, 817, 996, 1006, 1783
NmeAIII GCCGAG 2 cut(s) 268, 566
NmuCI GTSAC 3 cut(s) 273, 1690, 1858
NspI RCATGY 1 cut(s) 1872
NspV TTCGAA 3 cut(s) 398, 524, 1593
PaeI GCATGC 1 cut(s) 1872
PagI TCATGA 2 cut(s) 1273, 1849
PciSI GCTCTTC 1 cut(s) 1513
PcsI WCGNNNNNNNCGW 7 cut(s) 60, 72, 189, 266, 521, 536, 656
PfeI GAWTC 2 cut(s) 105, 1264
PflFI GACNNNGTC 3 cut(s) 374, 1343, 1538
Ple19I CGATCG 1 cut(s) 663
PleI GAGTC 3 cut(s) 100, 520, 1956
PpsI GAGTC 3 cut(s) 100, 520, 1956
PshAI GACNNNNGTC 1 cut(s) 168
Psp6I CCWGG 2 cut(s) 1257, 1887
PspEI GGTNACC 2 cut(s) 1690, 1858
PspGI CCWGG 2 cut(s) 1257, 1887
PspN4I GGNNCC 8 cut(s) 12, 507, 669, 718, 817, 996, 1006, 1783
PspPI GGNCC 5 cut(s) 555, 1156, 1290, 1618, 1629
PsrI GAACNNNNNNTAC 2 cut(s) 1347, 1379
PstI CTGCAG 1 cut(s) 1987
PsyI GACNNNGTC 3 cut(s) 374, 1343, 1538
PvuI CGATCG 1 cut(s) 663
RgaI GCGATCGC 1 cut(s) 663
RsaI GTAC 9 cut(s) 552, 839, 926, 996, 1101, 1548, 1614, 1931, 1945
RsaNI GTAC 9 cut(s) 551, 838, 925, 995, 1100, 1547, 1613, 1930, 1944
RseI CAYNNNNRTG 2 cut(s) 293, 1605
SalI GTCGAC 1 cut(s) 757
SapI GCTCTTC 1 cut(s) 1513
SaqAI TTAA 3 cut(s) 798, 1706, 2003
Sau96I GGNCC 5 cut(s) 555, 1156, 1290, 1618, 1629
ScaI AGTACT 1 cut(s) 1614
SchI GAGTC 3 cut(s) 101, 521, 1957
ScrFI CCNGG 6 cut(s) 97, 98, 306, 979, 1259, 1889
SduI GDGCHC 2 cut(s) 1283, 1589
SfaAI GCGATCGC 1 cut(s) 663
SfaNI GCATC 6 cut(s) 534, 939, 1300, 1420, 1597, 1780
SfcI CTRYAG 1 cut(s) 1983
SfuI TTCGAA 3 cut(s) 398, 524, 1593
SgfI GCGATCGC 1 cut(s) 663
SgrAI CRCCGGYG 1 cut(s) 931
SinI GGWCC 5 cut(s) 555, 1156, 1290, 1618, 1629
SmaI CCCGGG 1 cut(s) 98
SmiMI CAYNNNNRTG 2 cut(s) 293, 1605
SphI GCATGC 1 cut(s) 1872
SspMI CTAG 7 cut(s) 672, 678, 735, 1314, 1326, 1512, 1998
StyD4I CCNGG 6 cut(s) 95, 96, 304, 977, 1257, 1887
StyI CCWWGG 1 cut(s) 1386
TaiI ACGT 4 cut(s) 38, 216, 653, 714
TatI WGTACW 3 cut(s) 1099, 1612, 1929
TfiI GAWTC 2 cut(s) 105, 1264
Tru1I TTAA 3 cut(s) 798, 1706, 2003
Tru9I TTAA 3 cut(s) 798, 1706, 2003
TscAI CASTG 2 cut(s) 628, 1771
TseFI GTSAC 3 cut(s) 273, 1690, 1858
TseI GCWGC 5 cut(s) 223, 1147, 1408, 1865, 1892
Tsp45I GTSAC 3 cut(s) 273, 1690, 1858
TspDTI ATGAA 9 cut(s) 59, 814, 1340, 1641, 1838, 1866, 1944, 1959, 2002
TspGWI ACGGA 3 cut(s) 190, 776, 907
TspMI CCCGGG 1 cut(s) 96
TspRI CASTG 2 cut(s) 628, 1771
Tth111I GACNNNGTC 3 cut(s) 374, 1343, 1538
VpaK11BI GGWCC 5 cut(s) 555, 1156, 1290, 1618, 1629
XapI RAATTY 2 cut(s) 526, 1553
XceI RCATGY 1 cut(s) 1872
XmaI CCCGGG 1 cut(s) 96
XmiI GTMKAC 1 cut(s) 758
XspI CTAG 7 cut(s) 672, 678, 735, 1314, 1326, 1512, 1998
ZraI GACGTC 1 cut(s) 214
ZrmI AGTACT 1 cut(s) 1614
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.