Rmu_sc0008209.1_g000012

Golgi to ER traffic protein 4

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008209.1
OG0008175
Physical Location & Seq
Forward (+)
39876 .. 40484
609 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008209.1_g000012.1.cds

Sequence Viewer

Length: 360 bp
atgcgcattgatagtatatgcttgttttgtcgcagatatgtagctgctcagaggtatactgaagctttagatattcttcagtcgggtgcatgcatccagttgaaacatgggcaggttacgtgtggggcagagttagctgctttgtttgtggatacacttgtcaaagcgagatgcccttatgacgatgaaaccctcggtcagttgctcgcctccagcgtcaagcaccgcctccctccagtccatccttccctcttctctgttgcctctgccggagctccttcagtctatttcttccatcaaggccgattacattgctcgccaacaggtcttctatcccttcacatttttttttggcaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF410

Protein Analysis

119

Amino Acids

13.18

Weight (kDa)

8.27

Isoelectric Point (pI)

41.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 5
Acc36I ACCTGC 1 cut(s) 103
AccI GTMKAC 1 cut(s) 56
AciI CCGC 1 cut(s) 226
AcuI CTGAAG 3 cut(s) 62, 81, 264
AflIII ACRYGT 1 cut(s) 119
AgsI TTSAA 1 cut(s) 103
AluBI AGCT 4 cut(s) 44, 65, 137, 275
AluI AGCT 4 cut(s) 44, 65, 137, 275
Alw21I GWGCWC 1 cut(s) 277
AoxI GGCC 1 cut(s) 301
ApeKI GCWGC 2 cut(s) 44, 137
AspLEI GCGC 1 cut(s) 6
BaeI ACNNNNGTAYC 2 cut(s) 144, 177
BanII GRGCYC 1 cut(s) 277
BbsI GAAGAC 1 cut(s) 320
Bbv12I GWGCWC 1 cut(s) 277
BbvI GCAGC 2 cut(s) 31, 124
BccI CCATC 2 cut(s) 249, 303
BcgI CGANNNNNNTGC 2 cut(s) 294, 328
BciVI GTATCC 1 cut(s) 145
BfuAI ACCTGC 1 cut(s) 103
BfuI GTATCC 1 cut(s) 145
BisI GCNGC 2 cut(s) 45, 138
BlsI GCNGC 2 cut(s) 46, 139
BmsI GCATC 2 cut(s) 102, 161
BpiI GAAGAC 1 cut(s) 320
BpmI CTGGAG 2 cut(s) 196, 219
BsaAI YACGTR 1 cut(s) 120
BsaJI CCNNGG 1 cut(s) 193
Bse1I ACTGG 2 cut(s) 97, 236
Bse3DI GCAATG 1 cut(s) 310
BseDI CCNNGG 1 cut(s) 193
BseGI GGATG 2 cut(s) 93, 241
BseMI GCAATG 1 cut(s) 310
BseMII CTCAG 1 cut(s) 62
BseNI ACTGG 2 cut(s) 97, 236
BseXI GCAGC 2 cut(s) 31, 124
BshFI GGCC 1 cut(s) 303
BsiHKAI GWGCWC 1 cut(s) 277
BsiSI CCGG 1 cut(s) 270
BsnI GGCC 1 cut(s) 303
Bsp1286I GDGCHC 1 cut(s) 277
BspACI CCGC 1 cut(s) 226
BspANI GGCC 1 cut(s) 303
BspCNI CTCAG 1 cut(s) 61
BspMI ACCTGC 1 cut(s) 103
BsrDI GCAATG 1 cut(s) 310
BsrI ACTGG 2 cut(s) 97, 236
BssECI CCNNGG 1 cut(s) 193
BssNAI GTATAC 1 cut(s) 57
Bst1107I GTATAC 1 cut(s) 57
Bst6I CTCTTC 1 cut(s) 257
BstBAI YACGTR 1 cut(s) 120
BstC8I GCNNGC 3 cut(s) 91, 207, 317
BstDEI CTNAG 1 cut(s) 48
BstF5I GGATG 2 cut(s) 93, 241
BstHHI GCGC 1 cut(s) 6
BstMWI GCNNNNNNNGC 1 cut(s) 134
BstNSI RCATGY 1 cut(s) 93
BstV1I GCAGC 2 cut(s) 31, 124
BstV2I GAAGAC 1 cut(s) 320
BstZ17I GTATAC 1 cut(s) 57
BsuI GTATCC 1 cut(s) 145
BsuRI GGCC 1 cut(s) 303
BtsCI GGATG 2 cut(s) 93, 241
BveI ACCTGC 1 cut(s) 103
Cac8I GCNNGC 3 cut(s) 91, 207, 317
CfoI GCGC 1 cut(s) 6
CseI GACGC 1 cut(s) 205
CviAII CATG 2 cut(s) 90, 107
CviJI RGCY 5 cut(s) 44, 65, 137, 275, 303
CviKI_1 RGCY 5 cut(s) 44, 65, 137, 275, 303
DdeI CTNAG 1 cut(s) 48
Eam1104I CTCTTC 1 cut(s) 257
EarI CTCTTC 1 cut(s) 257
Ecl136II GAGCTC 1 cut(s) 275
Eco24I GRGCYC 1 cut(s) 277
Eco53kI GAGCTC 1 cut(s) 275
Eco57I CTGAAG 3 cut(s) 62, 81, 264
EcoICRI GAGCTC 1 cut(s) 275
EcoT22I ATGCAT 1 cut(s) 95
EcoT38I GRGCYC 1 cut(s) 277
FaeI CATG 2 cut(s) 93, 110
FaiI YATR 7 cut(s) 17, 19, 39, 57, 91, 108, 180
FatI CATG 2 cut(s) 89, 106
FblI GTMKAC 1 cut(s) 56
Fnu4HI GCNGC 2 cut(s) 45, 138
FokI GGATG 2 cut(s) 80, 228
FriOI GRGCYC 1 cut(s) 277
Fsp4HI GCNGC 2 cut(s) 45, 138
FspAI RTGCGCAY 1 cut(s) 5
FspI TGCGCA 1 cut(s) 5
GlaI GCGC 1 cut(s) 5
GluI GCNGC 2 cut(s) 45, 138
GsuI CTGGAG 2 cut(s) 196, 219
HaeIII GGCC 1 cut(s) 303
HapII CCGG 1 cut(s) 270
HgaI GACGC 1 cut(s) 205
HhaI GCGC 1 cut(s) 6
Hin1II CATG 2 cut(s) 93, 110
Hin6I GCGC 1 cut(s) 4
HinP1I GCGC 1 cut(s) 4
HindIII AAGCTT 1 cut(s) 63
HpaII CCGG 1 cut(s) 270
Hpy166II GTNNAC 1 cut(s) 57
Hpy188I TCNGA 1 cut(s) 51
Hpy8I GTNNAC 1 cut(s) 57
HpyAV CCTTC 3 cut(s) 255, 288, 347
HpyCH4IV ACGT 1 cut(s) 119
HpyCH4V TGCA 2 cut(s) 89, 93
HpyF10VI GCNNNNNNNGC 1 cut(s) 134
HpyF3I CTNAG 1 cut(s) 48
HpySE526I ACGT 1 cut(s) 119
Hsp92II CATG 2 cut(s) 93, 110
HspAI GCGC 1 cut(s) 4
LmnI GCTCC 2 cut(s) 272, 280
LpnPI CCDG 6 cut(s) 98, 110, 226, 249, 283, 309
Lsp1109I GCAGC 2 cut(s) 31, 124
LweI GCATC 2 cut(s) 102, 161
MaeII ACGT 1 cut(s) 119
MaeIII GTNAC 1 cut(s) 115
MboII GAAGA 4 cut(s) 68, 244, 283, 320
MhlI GDGCHC 1 cut(s) 277
MnlI CCTC 7 cut(s) 45, 203, 220, 239, 243, 260, 274
Mph1103I ATGCAT 1 cut(s) 95
MspI CCGG 1 cut(s) 270
MwoI GCNNNNNNNGC 1 cut(s) 134
NlaIII CATG 2 cut(s) 93, 110
NsbI TGCGCA 1 cut(s) 5
NsiI ATGCAT 1 cut(s) 95
NspI RCATGY 1 cut(s) 93
PaeI GCATGC 1 cut(s) 93
PcsI WCGNNNNNNNCGW 1 cut(s) 213
PkrI GCNGC 2 cut(s) 46, 139
Ppu21I YACGTR 1 cut(s) 120
Psp124BI GAGCTC 1 cut(s) 277
SacI GAGCTC 1 cut(s) 277
SatI GCNGC 2 cut(s) 45, 138
SduI GDGCHC 1 cut(s) 277
SetI ASST 8 cut(s) 46, 56, 67, 117, 122, 139, 277, 328
SfaNI GCATC 2 cut(s) 102, 161
SphI GCATGC 1 cut(s) 93
SsiI CCGC 1 cut(s) 226
SstI GAGCTC 1 cut(s) 277
TaiI ACGT 1 cut(s) 122
TaqII GACCGA 1 cut(s) 185
TseI GCWGC 2 cut(s) 44, 137
TspDTI ATGAA 1 cut(s) 201
XceI RCATGY 1 cut(s) 93
XcmI CCANNNNNNNNNTGG 1 cut(s) 104
XmiI GTMKAC 1 cut(s) 56
Zsp2I ATGCAT 1 cut(s) 95
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.