Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0008175

Physical Location & Seq

Genomic Coordinates Reverse (-)

61859432 .. 61861122

Gene Structure 1691 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G037510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGACGATGAAACCCTCGGTCAGTTTCTCGCCTCCAGATTGCTCGCCTCCAGCGTCAAGCACCGCCTCCCTCCAGTCCATCCTTCCCTCTTCTCTGTTGCCTCTGCCGGAGCTCCTTCAATCTATTTCTTCCATCAAGGCCGATTACATTGCTCGCCAACAGTGCAAAGCATCCTCTAGTCCTCTAGTCCTTTGCACCGATGATTCTGGGGTCTTTTCTACCAGCCCTTCCAACGAGTACAACCTTGCTGCTTCTGCATTTGGTCTTGGAAGGAGGGAAATATTTCAGCTAACGAGAAATTCGTGCAAGTTTATATTTGCTGATGATGGAGTGAAGAGAGAATTAAAGGAGATTTTTAGTTCACTAGAACAGAAGCTCGACCAATCTTTCGAATTTAGGGGCATATGCAGAAACGCTGATCATTTCATAAGTTGTATTATCAACTGTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004000 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006152 GO:0006154 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009116 GO:0009119 GO:0009163 GO:0009164 GO:0009987 GO:0016787 GO:0016810 GO:0016814 GO:0017144 GO:0018130 GO:0019239 GO:0019438 GO:0019439 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0034656 GO:0042278 GO:0042451 GO:0042454 GO:0042455 GO:0042737 GO:0043094 GO:0043101 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044271 GO:0044281 GO:0044282 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046085 GO:0046102 GO:0046103 GO:0046128 GO:0046129 GO:0046130 GO:0046483 GO:0046700 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0072523 GO:1901135 GO:1901136 GO:1901137 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576 GO:1901657 GO:1901658 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 ko05340 map00230 map01100 map05340

Pfam Domains

Protein Families

A_deaminase

Protein Analysis

150

Amino Acids

16.46

Weight (kDa)

5.79

Isoelectric Point (pI)

71.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
A_deaminase	PF00962	61 - 117	6.6e-07	Adenosine deaminase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0008175)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0149411 RchiOBHm_Chr2g0153331 RchiOBHm_Chr5g0038701 RchiOBHm_Chr5g0051251
rosa_laevigata	RLG00000019964 RLG00000020187 RLG00000028845 RLG00000031303
rosa_multiflora	Rmu_sc0008209.1_g000012
rosa_samantha	Rh2BG092200 Rh2CG094700 Rh2DG128800 Rh2DG223800 Rh2DG416500 Rh3AG050600 Rh3BG051800 Rh3CG051900 Rh3DG052500 Rh4CG087700 Rh5BG349200 Rh5CG265300 Rh7BG161600
rosa_wichuraiana	Rw2G037510 Rw7G005930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	63
AcsI	RAATTY	2 cut(s)	298, 392
AfaI	GTAC	1 cut(s)	239
AgsI	TTSAA	1 cut(s)	119
AluBI	AGCT	3 cut(s)	112, 289, 376
AluI	AGCT	3 cut(s)	112, 289, 376
Alw21I	GWGCWC	1 cut(s)	114
AoxI	GGCC	1 cut(s)	138
ApeKI	GCWGC	1 cut(s)	248
ApoI	RAATTY	2 cut(s)	298, 392
ArsI	GACNNNNNNTTYG	2 cut(s)	371, 403
Asp700I	GAANNNNTTC	1 cut(s)	282
AsuII	TTCGAA	1 cut(s)	390
BanII	GRGCYC	1 cut(s)	114
Bbv12I	GWGCWC	1 cut(s)	114
BbvI	GCAGC	1 cut(s)	235
BccI	CCATC	3 cut(s)	86, 140, 320
BcgI	CGANNNNNNTGC	2 cut(s)	131, 165
BclI	TGATCA	1 cut(s)	418
BfaI	CTAG	3 cut(s)	177, 185, 365
BisI	GCNGC	1 cut(s)	249
BlsI	GCNGC	1 cut(s)	250
BmsI	GCATC	1 cut(s)	179
BpmI	CTGGAG	3 cut(s)	18, 33, 56
Bpu14I	TTCGAA	1 cut(s)	390
BsaJI	CCNNGG	1 cut(s)	15
Bse1I	ACTGG	1 cut(s)	73
Bse3DI	GCAATG	1 cut(s)	147
BseDI	CCNNGG	1 cut(s)	15
BseGI	GGATG	2 cut(s)	78, 170
BseMI	GCAATG	1 cut(s)	147
BseNI	ACTGG	1 cut(s)	73
BseXI	GCAGC	1 cut(s)	235
BshFI	GGCC	1 cut(s)	140
BsiHKAI	GWGCWC	1 cut(s)	114
BsiSI	CCGG	1 cut(s)	107
BsnI	GGCC	1 cut(s)	140
Bsp119I	TTCGAA	1 cut(s)	390
Bsp1286I	GDGCHC	1 cut(s)	114
Bsp143I	GATC	1 cut(s)	418
BspACI	CCGC	1 cut(s)	63
BspANI	GGCC	1 cut(s)	140
BspT104I	TTCGAA	1 cut(s)	390
BsrDI	GCAATG	1 cut(s)	147
BsrI	ACTGG	1 cut(s)	73
BssECI	CCNNGG	1 cut(s)	15
BssMI	GATC	1 cut(s)	418
Bst4CI	ACNGT	2 cut(s)	162, 446
Bst6I	CTCTTC	2 cut(s)	94, 329
BstBI	TTCGAA	1 cut(s)	390
BstC8I	GCNNGC	2 cut(s)	44, 154
BstF5I	GGATG	2 cut(s)	78, 170
BstKTI	GATC	1 cut(s)	421
BstMBI	GATC	1 cut(s)	418
BstMWI	GCNNNNNNNGC	2 cut(s)	162, 254
BstV1I	GCAGC	1 cut(s)	235
BsuRI	GGCC	1 cut(s)	140
BtsCI	GGATG	2 cut(s)	78, 170
BtsIMutI	CAGTG	1 cut(s)	167
Cac8I	GCNNGC	2 cut(s)	44, 154
CseI	GACGC	1 cut(s)	42
Csp6I	GTAC	1 cut(s)	238
CviJI	RGCY	5 cut(s)	112, 140, 225, 289, 376
CviKI_1	RGCY	5 cut(s)	112, 140, 225, 289, 376
CviQI	GTAC	1 cut(s)	238
DpnI	GATC	1 cut(s)	420
DpnII	GATC	1 cut(s)	418
Eam1104I	CTCTTC	2 cut(s)	94, 329
EarI	CTCTTC	2 cut(s)	94, 329
Ecl136II	GAGCTC	1 cut(s)	112
Eco24I	GRGCYC	1 cut(s)	114
Eco53kI	GAGCTC	1 cut(s)	112
EcoICRI	GAGCTC	1 cut(s)	112
EcoT38I	GRGCYC	1 cut(s)	114
FaiI	YATR	4 cut(s)	314, 404, 406, 428
FauNDI	CATATG	1 cut(s)	404
FbaI	TGATCA	1 cut(s)	418
Fnu4HI	GCNGC	1 cut(s)	249
FokI	GGATG	2 cut(s)	65, 157
FriOI	GRGCYC	1 cut(s)	114
Fsp4HI	GCNGC	1 cut(s)	249
FspBI	CTAG	3 cut(s)	177, 185, 365
GluI	GCNGC	1 cut(s)	249
GsuI	CTGGAG	3 cut(s)	18, 33, 56
HaeIII	GGCC	1 cut(s)	140
HapII	CCGG	1 cut(s)	107
HgaI	GACGC	1 cut(s)	42
HinfI	GANTC	1 cut(s)	203
HpaII	CCGG	1 cut(s)	107
Hpy166II	GTNNAC	1 cut(s)	362
Hpy188III	TCNNGA	1 cut(s)	35
Hpy8I	GTNNAC	1 cut(s)	362
HpyAV	CCTTC	4 cut(s)	92, 125, 237, 264
HpyCH4III	ACNGT	2 cut(s)	162, 446
HpyCH4V	TGCA	5 cut(s)	165, 195, 257, 306, 408
HpyF10VI	GCNNNNNNNGC	2 cut(s)	162, 254
Ksp22I	TGATCA	1 cut(s)	418
Kzo9I	GATC	1 cut(s)	418
LmnI	GCTCC	2 cut(s)	109, 117
LpnPI	CCDG	6 cut(s)	48, 63, 86, 120, 192, 235
Lsp1109I	GCAGC	1 cut(s)	235
LweI	GCATC	1 cut(s)	179
MaeI	CTAG	3 cut(s)	177, 185, 365
MalI	GATC	1 cut(s)	420
MboI	GATC	1 cut(s)	418
MboII	GAAGA	3 cut(s)	81, 120, 346
MhlI	GDGCHC	1 cut(s)	114
MluCI	AATT	3 cut(s)	298, 341, 392
MmeI	TCCRAC	1 cut(s)	255
MroXI	GAANNNNTTC	1 cut(s)	282
MseI	TTAA	1 cut(s)	344
MspI	CCGG	1 cut(s)	107
MwoI	GCNNNNNNNGC	2 cut(s)	162, 254
NdeI	CATATG	1 cut(s)	404
NdeII	GATC	1 cut(s)	418
NspV	TTCGAA	1 cut(s)	390
PcsI	WCGNNNNNNNCGW	2 cut(s)	50, 299
PdmI	GAANNNNTTC	1 cut(s)	282
PfeI	GAWTC	1 cut(s)	203
PkrI	GCNGC	1 cut(s)	250
Psp124BI	GAGCTC	1 cut(s)	114
RsaI	GTAC	1 cut(s)	239
RsaNI	GTAC	1 cut(s)	238
SacI	GAGCTC	1 cut(s)	114
SaqAI	TTAA	1 cut(s)	344
SatI	GCNGC	1 cut(s)	249
Sau3AI	GATC	1 cut(s)	418
SduI	GDGCHC	1 cut(s)	114
SetI	ASST	4 cut(s)	114, 246, 291, 378
SfaNI	GCATC	1 cut(s)	179
SfuI	TTCGAA	1 cut(s)	390
Sse9I	AATT	3 cut(s)	298, 341, 392
SsiI	CCGC	1 cut(s)	63
SspI	AATATT	1 cut(s)	282
SspMI	CTAG	3 cut(s)	177, 185, 365
SstI	GAGCTC	1 cut(s)	114
TaaI	ACNGT	2 cut(s)	162, 446
TaqI	TCGA	2 cut(s)	378, 390
TaqII	GACCGA	1 cut(s)	7
TasI	AATT	3 cut(s)	298, 341, 392
TatI	WGTACW	1 cut(s)	237
TfiI	GAWTC	1 cut(s)	203
Tru1I	TTAA	1 cut(s)	344
Tru9I	TTAA	1 cut(s)	344
TscAI	CASTG	1 cut(s)	167
TseI	GCWGC	1 cut(s)	248
TspDTI	ATGAA	2 cut(s)	23, 415
TspRI	CASTG	1 cut(s)	167
XapI	RAATTY	2 cut(s)	298, 392
XmnI	GAANNNNTTC	1 cut(s)	282
XspI	CTAG	3 cut(s)	177, 185, 365

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.