Rw7G005930

Golgi to ER traffic protein 4

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0008175
Physical Location & Seq
Forward (+)
4980172 .. 4980963
792 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G005930.1

Sequence Viewer

Length: 339 bp
ATGTCCTTCTCCCCCAAATCGATTCAGCCTTATCAGAGGTCTGGAAGCACCGCCTCCAGCTACAATAATCTGTCATTGAAATTTGAACTCTGCAATCCCAGAAGAAAAAAAGAGAGCATGTTGAAGGAGAGAGCCAAAAGAGGCACACTGCCTCCAGCCCAAGAGCAAATTGAGAAATTTGAGAAAGTTGTAGAGGAAGGTAACTACCATGGAGCTCAGCAGCTGTACAAATCTATTAGTGCGAGATATGTAGCTGCTCAGAGGTATACTGAAGCTTTAGATATTCTTCAGTCGGGTGCATTCATCCAGTTGAAACATGGGCAGGACCAGTTACTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF410

Protein Analysis

112

Amino Acids

12.78

Weight (kDa)

9.55

Isoelectric Point (pI)

53.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 266
AciI CCGC 1 cut(s) 51
AcsI RAATTY 2 cut(s) 80, 176
AcuI CTGAAG 2 cut(s) 272, 291
AfaI GTAC 1 cut(s) 227
AgsI TTSAA 4 cut(s) 79, 86, 124, 313
AluBI AGCT 5 cut(s) 60, 215, 223, 254, 275
AluI AGCT 5 cut(s) 60, 215, 223, 254, 275
Alw21I GWGCWC 1 cut(s) 217
AlwNI CAGNNNCTG 1 cut(s) 223
ApeKI GCWGC 2 cut(s) 220, 254
ApoI RAATTY 2 cut(s) 80, 176
AspS9I GGNCC 1 cut(s) 325
AvaII GGWCC 1 cut(s) 325
BanII GRGCYC 1 cut(s) 217
Bbv12I GWGCWC 1 cut(s) 217
BbvI GCAGC 2 cut(s) 232, 241
BfaI CTAG 1 cut(s) 337
BisI GCNGC 2 cut(s) 221, 255
BlpI GCTNAGC 1 cut(s) 216
BlsI GCNGC 2 cut(s) 222, 256
Bme18I GGWCC 1 cut(s) 325
BmgT120I GGNCC 1 cut(s) 325
BpmI CTGGAG 2 cut(s) 40, 138
Bpu1102I GCTNAGC 1 cut(s) 216
Bsa29I ATCGAT 1 cut(s) 20
BsaJI CCNNGG 1 cut(s) 208
BsaXI ACNNNNNCTCC 2 cut(s) 136, 166
Bse1I ACTGG 2 cut(s) 307, 328
BseCI ATCGAT 1 cut(s) 20
BseDI CCNNGG 1 cut(s) 208
BseGI GGATG 1 cut(s) 303
BseMII CTCAG 2 cut(s) 230, 272
BseNI ACTGG 2 cut(s) 307, 328
BseXI GCAGC 2 cut(s) 232, 241
BshVI ATCGAT 1 cut(s) 20
BsiHKAI GWGCWC 1 cut(s) 217
BsmI GAATGC 1 cut(s) 299
Bsp1286I GDGCHC 1 cut(s) 217
Bsp1407I TGTACA 1 cut(s) 225
Bsp1720I GCTNAGC 1 cut(s) 216
Bsp19I CCATGG 1 cut(s) 208
BspACI CCGC 1 cut(s) 51
BspCNI CTCAG 2 cut(s) 229, 271
BspDI ATCGAT 1 cut(s) 20
BsrGI TGTACA 1 cut(s) 225
BsrI ACTGG 2 cut(s) 307, 328
BssECI CCNNGG 1 cut(s) 208
BssNAI GTATAC 1 cut(s) 267
BssT1I CCWWGG 1 cut(s) 208
Bst1107I GTATAC 1 cut(s) 267
BstAUI TGTACA 1 cut(s) 225
BstDEI CTNAG 2 cut(s) 216, 258
BstDSI CCRYGG 1 cut(s) 208
BstF5I GGATG 1 cut(s) 303
BstNSI RCATGY 1 cut(s) 121
BstV1I GCAGC 2 cut(s) 232, 241
BstZ17I GTATAC 1 cut(s) 267
Bsu15I ATCGAT 1 cut(s) 20
BsuTUI ATCGAT 1 cut(s) 20
BtgI CCRYGG 1 cut(s) 208
BtsCI GGATG 1 cut(s) 303
BtsI GCAGTG 1 cut(s) 146
BtsIMutI CAGTG 1 cut(s) 146
CaiI CAGNNNCTG 1 cut(s) 223
Cfr13I GGNCC 1 cut(s) 325
ClaI ATCGAT 1 cut(s) 20
Csp6I GTAC 1 cut(s) 226
CviAII CATG 3 cut(s) 118, 209, 317
CviJI RGCY 8 cut(s) 28, 60, 134, 158, 215, 223, 254, 275
CviKI_1 RGCY 8 cut(s) 28, 60, 134, 158, 215, 223, 254, 275
CviQI GTAC 1 cut(s) 226
DdeI CTNAG 2 cut(s) 216, 258
Ecl136II GAGCTC 1 cut(s) 215
Eco130I CCWWGG 1 cut(s) 208
Eco24I GRGCYC 1 cut(s) 217
Eco47I GGWCC 1 cut(s) 325
Eco53kI GAGCTC 1 cut(s) 215
Eco57I CTGAAG 2 cut(s) 272, 291
EcoICRI GAGCTC 1 cut(s) 215
EcoT14I CCWWGG 1 cut(s) 208
EcoT38I GRGCYC 1 cut(s) 217
ErhI CCWWGG 1 cut(s) 208
FaeI CATG 3 cut(s) 121, 212, 320
FaiI YATR 5 cut(s) 119, 210, 249, 267, 318
FatI CATG 3 cut(s) 117, 208, 316
FblI GTMKAC 1 cut(s) 266
Fnu4HI GCNGC 2 cut(s) 221, 255
FokI GGATG 1 cut(s) 290
FriOI GRGCYC 1 cut(s) 217
Fsp4HI GCNGC 2 cut(s) 221, 255
FspBI CTAG 1 cut(s) 337
GluI GCNGC 2 cut(s) 221, 255
GsuI CTGGAG 2 cut(s) 40, 138
Hin1II CATG 3 cut(s) 121, 212, 320
HindIII AAGCTT 1 cut(s) 273
HinfI GANTC 1 cut(s) 22
Hpy166II GTNNAC 1 cut(s) 267
Hpy188I TCNGA 2 cut(s) 36, 261
Hpy188III TCNNGA 1 cut(s) 42
Hpy8I GTNNAC 1 cut(s) 267
HpyAV CCTTC 3 cut(s) 16, 118, 191
HpyCH4V TGCA 2 cut(s) 93, 299
HpyF3I CTNAG 2 cut(s) 216, 258
Hsp92II CATG 3 cut(s) 121, 212, 320
LmnI GCTCC 1 cut(s) 212
LpnPI CCDG 6 cut(s) 27, 70, 112, 168, 308, 320
Lsp1109I GCAGC 2 cut(s) 232, 241
MaeI CTAG 1 cut(s) 337
MaeIII GTNAC 2 cut(s) 200, 330
MboII GAAGA 2 cut(s) 114, 278
MhlI GDGCHC 1 cut(s) 217
MluCI AATT 3 cut(s) 80, 168, 176
MnlI CCTC 6 cut(s) 30, 64, 134, 162, 187, 255
MspA1I CMGCKG 1 cut(s) 223
Mva1269I GAATGC 1 cut(s) 299
NcoI CCATGG 1 cut(s) 208
NlaIII CATG 3 cut(s) 121, 212, 320
NspI RCATGY 1 cut(s) 121
PctI GAATGC 1 cut(s) 299
PfeI GAWTC 1 cut(s) 22
PkrI GCNGC 2 cut(s) 222, 256
Psp124BI GAGCTC 1 cut(s) 217
PspPI GGNCC 1 cut(s) 325
PstNI CAGNNNCTG 1 cut(s) 223
PvuII CAGCTG 1 cut(s) 223
RsaI GTAC 1 cut(s) 227
RsaNI GTAC 1 cut(s) 226
SacI GAGCTC 1 cut(s) 217
SatI GCNGC 2 cut(s) 221, 255
Sau96I GGNCC 1 cut(s) 325
SduI GDGCHC 1 cut(s) 217
SetI ASST 8 cut(s) 41, 62, 202, 217, 225, 256, 266, 277
SinI GGWCC 1 cut(s) 325
Sse9I AATT 3 cut(s) 80, 168, 176
SsiI CCGC 1 cut(s) 51
SspMI CTAG 1 cut(s) 337
SstI GAGCTC 1 cut(s) 217
StyI CCWWGG 1 cut(s) 208
TaqI TCGA 1 cut(s) 20
TasI AATT 3 cut(s) 80, 168, 176
TatI WGTACW 1 cut(s) 225
TfiI GAWTC 1 cut(s) 22
TscAI CASTG 1 cut(s) 153
TseI GCWGC 2 cut(s) 220, 254
TspDTI ATGAA 1 cut(s) 292
TspRI CASTG 1 cut(s) 153
VpaK11BI GGWCC 1 cut(s) 325
XapI RAATTY 2 cut(s) 80, 176
XceI RCATGY 1 cut(s) 121
XcmI CCANNNNNNNNNTGG 1 cut(s) 314
XmiI GTMKAC 1 cut(s) 266
XspI CTAG 1 cut(s) 337
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.