Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0008175

Physical Location & Seq

Genomic Coordinates Reverse (-)

3515354 .. 3520900

Gene Structure 5547 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG052500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGTCGAAGGAGAGAGCCAAAAGAGGCACACTGCCTCCAGCCCAAGAGCAAATTGAAAAATTTGAGAAAGTTGTAAAGGAAGGTAACTACTATGCAGCTCAGCAGCTGTACAAATCTATTAGTGCGAGATATGTAGCTGCTCAGAGGTATACTGAAGATTTAGATATTCTTCAGTCGGGTGCATGCATCCAGTTGAAACATGGGCAGGTTACGTGTGGGGCAGAGTTAGCTGCTTTGTTTGTGGATACACTTGTCAAAGCGAGATGCCCTTATGACGATGAAACCCTCGAGCTCCTTCAGTCTATTTCTTCCATCAAGGCCGATTACATTGCTCGCCAACAGTGCAAAGCATCCTCTAGTCCTCTAGTCCTCTGCACTGATGATTCTGGGGTCTTTTCTACCAGCCCTTCCAACGAGTACAACCTTGCTGCTTCTGCATTTGGTCTTGGAAGGAGGGAAAAATTTCAGCTAACGAGAAATTCGTGCAAGTTTATATTTGCTGATGATGGAGTGAAGAGAGAATTAAAGGAGATTTTTAGTTCACCAGAACAGAAGCTCGACCAATCTTTCGAATTTAGGGGCATATGCAGAAACGCTGATCATTTCATAAGTTGTATTATCAACTGTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF410

Protein Analysis

210

Amino Acids

23.56

Weight (kDa)

6.73

Isoelectric Point (pI)

54.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GET4	PF04190	48 - 108	9e-11	Golgi to ER traffic protein 4
A_deaminase	PF00962	120 - 177	4.6e-06	Adenosine deaminase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008175)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0149411 RchiOBHm_Chr2g0153331 RchiOBHm_Chr5g0038701 RchiOBHm_Chr5g0051251
rosa_laevigata	RLG00000019964 RLG00000020187 RLG00000028845 RLG00000031303
rosa_multiflora	Rmu_sc0008209.1_g000012
rosa_samantha	Rh2BG092200 Rh2CG094700 Rh2DG128800 Rh2DG223800 Rh2DG416500 Rh3AG050600 Rh3BG051800 Rh3CG051900 Rh3DG052500 Rh4CG087700 Rh5BG349200 Rh5CG265300 Rh7BG161600
rosa_wichuraiana	Rw2G037510 Rw7G005930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	196
AccI	GTMKAC	1 cut(s)	149
AcsI	RAATTY	4 cut(s)	59, 461, 478, 572
AcuI	CTGAAG	3 cut(s)	155, 174, 281
AfaI	GTAC	2 cut(s)	110, 419
AflIII	ACRYGT	1 cut(s)	212
AgsI	TTSAA	2 cut(s)	56, 196
AluBI	AGCT	7 cut(s)	98, 106, 137, 230, 292, 469, 556
AluI	AGCT	7 cut(s)	98, 106, 137, 230, 292, 469, 556
Alw21I	GWGCWC	1 cut(s)	294
AlwNI	CAGNNNCTG	1 cut(s)	106
Ama87I	CYCGRG	1 cut(s)	287
AoxI	GGCC	1 cut(s)	318
ApeKI	GCWGC	5 cut(s)	95, 103, 137, 230, 428
ApoI	RAATTY	4 cut(s)	59, 461, 478, 572
ArsI	GACNNNNNNTTYG	2 cut(s)	551, 583
Asp700I	GAANNNNTTC	1 cut(s)	462
AsuHPI	GGTGA	1 cut(s)	534
AsuII	TTCGAA	1 cut(s)	570
AvaI	CYCGRG	1 cut(s)	287
BaeI	ACNNNNGTAYC	2 cut(s)	237, 270
BanII	GRGCYC	1 cut(s)	294
Bbv12I	GWGCWC	1 cut(s)	294
BbvI	GCAGC	5 cut(s)	107, 115, 124, 217, 415
BccI	CCATC	2 cut(s)	320, 500
BcgI	CGANNNNNNTGC	2 cut(s)	311, 345
BciVI	GTATCC	1 cut(s)	238
BclI	TGATCA	1 cut(s)	598
BfaI	CTAG	2 cut(s)	357, 365
BfuAI	ACCTGC	1 cut(s)	196
BfuI	GTATCC	1 cut(s)	238
BisI	GCNGC	5 cut(s)	96, 104, 138, 231, 429
BlpI	GCTNAGC	1 cut(s)	99
BlsI	GCNGC	5 cut(s)	97, 105, 139, 232, 430
BmeT110I	CYCGRG	1 cut(s)	287
BmsI	GCATC	3 cut(s)	195, 254, 359
BpmI	CTGGAG	1 cut(s)	21
Bpu1102I	GCTNAGC	1 cut(s)	99
Bpu14I	TTCGAA	1 cut(s)	570
BsaAI	YACGTR	1 cut(s)	213
BsaXI	ACNNNNNCTCC	2 cut(s)	19, 49
Bse1I	ACTGG	1 cut(s)	190
Bse3DI	GCAATG	1 cut(s)	327
BseGI	GGATG	2 cut(s)	186, 350
BseMI	GCAATG	1 cut(s)	327
BseMII	CTCAG	2 cut(s)	113, 155
BseNI	ACTGG	1 cut(s)	190
BseXI	GCAGC	5 cut(s)	107, 115, 124, 217, 415
BsgI	GTGCAG	1 cut(s)	358
BshFI	GGCC	1 cut(s)	320
BsiHKAI	GWGCWC	1 cut(s)	294
BsiHKCI	CYCGRG	1 cut(s)	287
BsnI	GGCC	1 cut(s)	320
BsoBI	CYCGRG	1 cut(s)	287
Bsp119I	TTCGAA	1 cut(s)	570
Bsp1286I	GDGCHC	1 cut(s)	294
Bsp1407I	TGTACA	1 cut(s)	108
Bsp143I	GATC	1 cut(s)	598
Bsp1720I	GCTNAGC	1 cut(s)	99
BspANI	GGCC	1 cut(s)	320
BspCNI	CTCAG	2 cut(s)	112, 154
BspMI	ACCTGC	1 cut(s)	196
BspT104I	TTCGAA	1 cut(s)	570
BsrDI	GCAATG	1 cut(s)	327
BsrGI	TGTACA	1 cut(s)	108
BsrI	ACTGG	1 cut(s)	190
BssMI	GATC	1 cut(s)	598
BssNAI	GTATAC	1 cut(s)	150
Bst1107I	GTATAC	1 cut(s)	150
Bst4CI	ACNGT	2 cut(s)	342, 626
Bst6I	CTCTTC	1 cut(s)	509
BstAUI	TGTACA	1 cut(s)	108
BstBAI	YACGTR	1 cut(s)	213
BstBI	TTCGAA	1 cut(s)	570
BstC8I	GCNNGC	2 cut(s)	184, 334
BstDEI	CTNAG	2 cut(s)	99, 141
BstF5I	GGATG	2 cut(s)	186, 350
BstKTI	GATC	1 cut(s)	601
BstMBI	GATC	1 cut(s)	598
BstMWI	GCNNNNNNNGC	3 cut(s)	227, 342, 434
BstNSI	RCATGY	1 cut(s)	186
BstV1I	GCAGC	5 cut(s)	107, 115, 124, 217, 415
BstZ17I	GTATAC	1 cut(s)	150
BsuI	GTATCC	1 cut(s)	238
BsuRI	GGCC	1 cut(s)	320
BtsCI	GGATG	2 cut(s)	186, 350
BtsI	GCAGTG	1 cut(s)	29
BtsIMutI	CAGTG	3 cut(s)	29, 347, 375
BveI	ACCTGC	1 cut(s)	196
Cac8I	GCNNGC	2 cut(s)	184, 334
CaiI	CAGNNNCTG	1 cut(s)	106
Csp6I	GTAC	2 cut(s)	109, 418
CviAII	CATG	2 cut(s)	183, 200
CviQI	GTAC	2 cut(s)	109, 418
DdeI	CTNAG	2 cut(s)	99, 141
DpnI	GATC	1 cut(s)	600
DpnII	GATC	1 cut(s)	598
Eam1104I	CTCTTC	1 cut(s)	509
EarI	CTCTTC	1 cut(s)	509
Ecl136II	GAGCTC	1 cut(s)	292
Eco24I	GRGCYC	1 cut(s)	294
Eco53kI	GAGCTC	1 cut(s)	292
Eco57I	CTGAAG	3 cut(s)	155, 174, 281
Eco88I	CYCGRG	1 cut(s)	287
EcoICRI	GAGCTC	1 cut(s)	292
EcoT22I	ATGCAT	1 cut(s)	188
EcoT38I	GRGCYC	1 cut(s)	294
FaeI	CATG	2 cut(s)	186, 203
FatI	CATG	2 cut(s)	182, 199
FauNDI	CATATG	1 cut(s)	584
FbaI	TGATCA	1 cut(s)	598
FblI	GTMKAC	1 cut(s)	149
Fnu4HI	GCNGC	5 cut(s)	96, 104, 138, 231, 429
FokI	GGATG	2 cut(s)	173, 337
FriOI	GRGCYC	1 cut(s)	294
Fsp4HI	GCNGC	5 cut(s)	96, 104, 138, 231, 429
FspBI	CTAG	2 cut(s)	357, 365
GluI	GCNGC	5 cut(s)	96, 104, 138, 231, 429
GsuI	CTGGAG	1 cut(s)	21
HaeIII	GGCC	1 cut(s)	320
Hin1II	CATG	2 cut(s)	186, 203
HinfI	GANTC	1 cut(s)	383
HphI	GGTGA	1 cut(s)	534
Hpy166II	GTNNAC	2 cut(s)	150, 542
Hpy188I	TCNGA	1 cut(s)	144
Hpy8I	GTNNAC	2 cut(s)	150, 542
HpyAV	CCTTC	4 cut(s)	74, 305, 417, 444
HpyCH4III	ACNGT	2 cut(s)	342, 626
HpyCH4IV	ACGT	1 cut(s)	212
HpyCH4V	TGCA	8 cut(s)	95, 182, 186, 345, 375, 437, 486, 588
HpyF10VI	GCNNNNNNNGC	3 cut(s)	227, 342, 434
HpyF3I	CTNAG	2 cut(s)	99, 141
HpySE526I	ACGT	1 cut(s)	212
Hsp92II	CATG	2 cut(s)	186, 203
Ksp22I	TGATCA	1 cut(s)	598
Kzo9I	GATC	1 cut(s)	598
LmnI	GCTCC	1 cut(s)	297
LpnPI	CCDG	6 cut(s)	51, 191, 203, 372, 415, 558
Lsp1109I	GCAGC	5 cut(s)	107, 115, 124, 217, 415
LweI	GCATC	3 cut(s)	195, 254, 359
MaeI	CTAG	2 cut(s)	357, 365
MaeII	ACGT	1 cut(s)	212
MaeIII	GTNAC	2 cut(s)	83, 208
MalI	GATC	1 cut(s)	600
MboI	GATC	1 cut(s)	598
MboII	GAAGA	4 cut(s)	161, 167, 300, 526
MhlI	GDGCHC	1 cut(s)	294
MluCI	AATT	6 cut(s)	51, 59, 461, 478, 521, 572
MmeI	TCCRAC	1 cut(s)	435
MnlI	CCTC	8 cut(s)	17, 45, 138, 296, 364, 372, 380, 447
Mph1103I	ATGCAT	1 cut(s)	188
MroXI	GAANNNNTTC	1 cut(s)	462
MseI	TTAA	1 cut(s)	524
MspA1I	CMGCKG	1 cut(s)	106
MwoI	GCNNNNNNNGC	3 cut(s)	227, 342, 434
NdeI	CATATG	1 cut(s)	584
NdeII	GATC	1 cut(s)	598
NlaIII	CATG	2 cut(s)	186, 203
NsiI	ATGCAT	1 cut(s)	188
NspI	RCATGY	1 cut(s)	186
NspV	TTCGAA	1 cut(s)	570
PaeI	GCATGC	1 cut(s)	186
PaeR7I	CTCGAG	1 cut(s)	287
PcsI	WCGNNNNNNNCGW	1 cut(s)	479
PdmI	GAANNNNTTC	1 cut(s)	462
PfeI	GAWTC	1 cut(s)	383
PkrI	GCNGC	5 cut(s)	97, 105, 139, 232, 430
Ppu21I	YACGTR	1 cut(s)	213
Psp124BI	GAGCTC	1 cut(s)	294
PspXI	VCTCGAGB	1 cut(s)	287
PstNI	CAGNNNCTG	1 cut(s)	106
PvuII	CAGCTG	1 cut(s)	106
RsaI	GTAC	2 cut(s)	110, 419
RsaNI	GTAC	2 cut(s)	109, 418
SacI	GAGCTC	1 cut(s)	294
SaqAI	TTAA	1 cut(s)	524
SatI	GCNGC	5 cut(s)	96, 104, 138, 231, 429
Sau3AI	GATC	1 cut(s)	598
SduI	GDGCHC	1 cut(s)	294
SfaNI	GCATC	3 cut(s)	195, 254, 359
Sfr274I	CTCGAG	1 cut(s)	287
SfuI	TTCGAA	1 cut(s)	570
SlaI	CTCGAG	1 cut(s)	287
SmlI	CTYRAG	1 cut(s)	287
SmoI	CTYRAG	1 cut(s)	287
SphI	GCATGC	1 cut(s)	186
Sse9I	AATT	6 cut(s)	51, 59, 461, 478, 521, 572
SspMI	CTAG	2 cut(s)	357, 365
SstI	GAGCTC	1 cut(s)	294
TaaI	ACNGT	2 cut(s)	342, 626
TaiI	ACGT	1 cut(s)	215
TaqI	TCGA	4 cut(s)	5, 288, 558, 570
TasI	AATT	6 cut(s)	51, 59, 461, 478, 521, 572
TatI	WGTACW	2 cut(s)	108, 417
TfiI	GAWTC	1 cut(s)	383
Tru1I	TTAA	1 cut(s)	524
Tru9I	TTAA	1 cut(s)	524
TscAI	CASTG	3 cut(s)	36, 347, 382
TseI	GCWGC	5 cut(s)	95, 103, 137, 230, 428
TspDTI	ATGAA	2 cut(s)	294, 595
TspRI	CASTG	3 cut(s)	36, 347, 382
XapI	RAATTY	4 cut(s)	59, 461, 478, 572
XceI	RCATGY	1 cut(s)	186
XcmI	CCANNNNNNNNNTGG	1 cut(s)	197
XhoI	CTCGAG	1 cut(s)	287
XmiI	GTMKAC	1 cut(s)	149
XmnI	GAANNNNTTC	1 cut(s)	462
XspI	CTAG	2 cut(s)	357, 365
Zsp2I	ATGCAT	1 cut(s)	188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.