Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0008175

Physical Location & Seq

Genomic Coordinates Forward (+)

60504985 .. 60507604

Gene Structure 2620 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG416500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGTCGAAGGAGAGAGCCAAAAGAGGCACACTGCCTCCAGCCCAAGAGCAAATTGAGAAATTTGAGAAAGTTGTAGAGGAAGGTAACTACCATGGAGCTCAGCAGCTGTACAAATCTATTAGTGCGAGATATGTAGCTGCTCAGAGGTATACTGAAGCTTTAGATATTCTTCAGTCGGGTGCATGCATCCAGTTGAAACATGGGCAGGTTACGTGTGGGGCAGAGTTAGCTGCTTTGTTTGTGGATACACTTGTCAAAGCGAGATGCCCTTATGACGATGAAACCCTCAGTCAGTTGCTCGCCTCCAGCGCCGATTACATTGCTCGCCAACAGTGCAAAGCATCCTCTAGTCCTCTGGTCCTTTGCACCGATGATTCTGGGGTCTTTTCTACCAGCACTTCCAACGAGTACAACCTTGCTGCTTCTGCATTTGGTCTTGGAAGGAGGGAAATATTTCAACTAACGAGAAATTCGTGCAAGTTTATATTTGCTGATGATGGAGTGAAGAGAGAATTAAAGGAGATTTTTAGTTCACCAGAACAGAAGCTCGACCAATCTTTCGAATTAAGGGGCATATGCAGAAACGCTGGTCGTTTCATAAGTTGTATTATCAACTGTTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF410

Protein Analysis

207

Amino Acids

22.98

Weight (kDa)

6.73

Isoelectric Point (pI)

51.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GET4	PF04190	48 - 101	1.9e-12	Golgi to ER traffic protein 4
A_deaminase	PF00962	116 - 174	2.4e-07	Adenosine deaminase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008175)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0149411 RchiOBHm_Chr2g0153331 RchiOBHm_Chr5g0038701 RchiOBHm_Chr5g0051251
rosa_laevigata	RLG00000019964 RLG00000020187 RLG00000028845 RLG00000031303
rosa_multiflora	Rmu_sc0008209.1_g000012
rosa_samantha	Rh2BG092200 Rh2CG094700 Rh2DG128800 Rh2DG223800 Rh2DG416500 Rh3AG050600 Rh3BG051800 Rh3CG051900 Rh3DG052500 Rh4CG087700 Rh5BG349200 Rh5CG265300 Rh7BG161600
rosa_wichuraiana	Rw2G037510 Rw7G005930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	196
AccI	GTMKAC	1 cut(s)	149
AcsI	RAATTY	2 cut(s)	59, 469
AcuI	CTGAAG	2 cut(s)	155, 174
AfaI	GTAC	2 cut(s)	110, 410
AflIII	ACRYGT	1 cut(s)	212
AgsI	TTSAA	2 cut(s)	196, 458
AluBI	AGCT	6 cut(s)	98, 106, 137, 158, 230, 547
AluI	AGCT	6 cut(s)	98, 106, 137, 158, 230, 547
Alw21I	GWGCWC	1 cut(s)	100
AlwNI	CAGNNNCTG	1 cut(s)	106
ApeKI	GCWGC	4 cut(s)	103, 137, 230, 419
ApoI	RAATTY	2 cut(s)	59, 469
ArsI	GACNNNNNNTTYG	2 cut(s)	542, 574
Asp700I	GAANNNNTTC	1 cut(s)	453
AspLEI	GCGC	1 cut(s)	311
AspS9I	GGNCC	1 cut(s)	358
AsuHPI	GGTGA	1 cut(s)	525
AsuII	TTCGAA	1 cut(s)	561
AvaII	GGWCC	1 cut(s)	358
BaeI	ACNNNNGTAYC	2 cut(s)	237, 270
BanII	GRGCYC	1 cut(s)	100
Bbv12I	GWGCWC	1 cut(s)	100
BbvI	GCAGC	4 cut(s)	115, 124, 217, 406
BccI	CCATC	1 cut(s)	491
BcgI	CGANNNNNNTGC	2 cut(s)	302, 336
BciVI	GTATCC	1 cut(s)	238
BfaI	CTAG	1 cut(s)	348
BfoI	RGCGCY	1 cut(s)	312
BfuAI	ACCTGC	1 cut(s)	196
BfuI	GTATCC	1 cut(s)	238
BisI	GCNGC	4 cut(s)	104, 138, 231, 420
BlpI	GCTNAGC	1 cut(s)	99
BlsI	GCNGC	4 cut(s)	105, 139, 232, 421
Bme18I	GGWCC	1 cut(s)	358
BmgT120I	GGNCC	1 cut(s)	358
BmsI	GCATC	3 cut(s)	195, 254, 350
BpmI	CTGGAG	2 cut(s)	21, 289
Bpu1102I	GCTNAGC	1 cut(s)	99
Bpu14I	TTCGAA	1 cut(s)	561
BsaAI	YACGTR	1 cut(s)	213
BsaJI	CCNNGG	1 cut(s)	91
BsaXI	ACNNNNNCTCC	2 cut(s)	19, 49
Bse1I	ACTGG	1 cut(s)	190
Bse3DI	GCAATG	1 cut(s)	318
BseDI	CCNNGG	1 cut(s)	91
BseGI	GGATG	2 cut(s)	186, 341
BseMI	GCAATG	1 cut(s)	318
BseMII	CTCAG	3 cut(s)	113, 155, 301
BseNI	ACTGG	1 cut(s)	190
BseXI	GCAGC	4 cut(s)	115, 124, 217, 406
BsiHKAI	GWGCWC	1 cut(s)	100
Bsp119I	TTCGAA	1 cut(s)	561
Bsp1286I	GDGCHC	1 cut(s)	100
Bsp1407I	TGTACA	1 cut(s)	108
Bsp1720I	GCTNAGC	1 cut(s)	99
Bsp19I	CCATGG	1 cut(s)	91
BspCNI	CTCAG	3 cut(s)	112, 154, 300
BspMI	ACCTGC	1 cut(s)	196
BspT104I	TTCGAA	1 cut(s)	561
BsrDI	GCAATG	1 cut(s)	318
BsrGI	TGTACA	1 cut(s)	108
BsrI	ACTGG	1 cut(s)	190
BssECI	CCNNGG	1 cut(s)	91
BssNAI	GTATAC	1 cut(s)	150
BssT1I	CCWWGG	1 cut(s)	91
Bst1107I	GTATAC	1 cut(s)	150
Bst4CI	ACNGT	2 cut(s)	333, 617
Bst6I	CTCTTC	1 cut(s)	500
BstAUI	TGTACA	1 cut(s)	108
BstBAI	YACGTR	1 cut(s)	213
BstBI	TTCGAA	1 cut(s)	561
BstC8I	GCNNGC	3 cut(s)	184, 300, 325
BstDEI	CTNAG	3 cut(s)	99, 141, 287
BstDSI	CCRYGG	1 cut(s)	91
BstF5I	GGATG	2 cut(s)	186, 341
BstH2I	RGCGCY	1 cut(s)	312
BstHHI	GCGC	1 cut(s)	311
BstMWI	GCNNNNNNNGC	4 cut(s)	227, 308, 333, 425
BstNSI	RCATGY	1 cut(s)	186
BstV1I	GCAGC	4 cut(s)	115, 124, 217, 406
BstZ17I	GTATAC	1 cut(s)	150
BsuI	GTATCC	1 cut(s)	238
BtgI	CCRYGG	1 cut(s)	91
BtsCI	GGATG	2 cut(s)	186, 341
BtsI	GCAGTG	1 cut(s)	29
BtsIMutI	CAGTG	2 cut(s)	29, 338
BveI	ACCTGC	1 cut(s)	196
Cac8I	GCNNGC	3 cut(s)	184, 300, 325
CaiI	CAGNNNCTG	1 cut(s)	106
CfoI	GCGC	1 cut(s)	311
Cfr13I	GGNCC	1 cut(s)	358
Csp6I	GTAC	2 cut(s)	109, 409
CviAII	CATG	3 cut(s)	92, 183, 200
CviJI	RGCY	8 cut(s)	17, 41, 98, 106, 137, 158, 230, 547
CviKI_1	RGCY	8 cut(s)	17, 41, 98, 106, 137, 158, 230, 547
CviQI	GTAC	2 cut(s)	109, 409
DdeI	CTNAG	3 cut(s)	99, 141, 287
Eam1104I	CTCTTC	1 cut(s)	500
EarI	CTCTTC	1 cut(s)	500
Ecl136II	GAGCTC	1 cut(s)	98
Eco130I	CCWWGG	1 cut(s)	91
Eco24I	GRGCYC	1 cut(s)	100
Eco47I	GGWCC	1 cut(s)	358
Eco53kI	GAGCTC	1 cut(s)	98
Eco57I	CTGAAG	2 cut(s)	155, 174
EcoICRI	GAGCTC	1 cut(s)	98
EcoT14I	CCWWGG	1 cut(s)	91
EcoT22I	ATGCAT	1 cut(s)	188
EcoT38I	GRGCYC	1 cut(s)	100
ErhI	CCWWGG	1 cut(s)	91
FaeI	CATG	3 cut(s)	95, 186, 203
FatI	CATG	3 cut(s)	91, 182, 199
FauNDI	CATATG	1 cut(s)	575
FblI	GTMKAC	1 cut(s)	149
Fnu4HI	GCNGC	4 cut(s)	104, 138, 231, 420
FokI	GGATG	2 cut(s)	173, 328
FriOI	GRGCYC	1 cut(s)	100
Fsp4HI	GCNGC	4 cut(s)	104, 138, 231, 420
FspBI	CTAG	1 cut(s)	348
GlaI	GCGC	1 cut(s)	310
GluI	GCNGC	4 cut(s)	104, 138, 231, 420
GsuI	CTGGAG	2 cut(s)	21, 289
HaeII	RGCGCY	1 cut(s)	312
HhaI	GCGC	1 cut(s)	311
Hin1II	CATG	3 cut(s)	95, 186, 203
Hin6I	GCGC	1 cut(s)	309
HinP1I	GCGC	1 cut(s)	309
HindIII	AAGCTT	1 cut(s)	156
HinfI	GANTC	1 cut(s)	374
HphI	GGTGA	1 cut(s)	525
Hpy166II	GTNNAC	2 cut(s)	150, 533
Hpy188I	TCNGA	1 cut(s)	144
Hpy8I	GTNNAC	2 cut(s)	150, 533
HpyAV	CCTTC	2 cut(s)	74, 435
HpyCH4III	ACNGT	2 cut(s)	333, 617
HpyCH4IV	ACGT	1 cut(s)	212
HpyCH4V	TGCA	7 cut(s)	182, 186, 336, 366, 428, 477, 579
HpyF10VI	GCNNNNNNNGC	4 cut(s)	227, 308, 333, 425
HpyF3I	CTNAG	3 cut(s)	99, 141, 287
HpySE526I	ACGT	1 cut(s)	212
Hsp92II	CATG	3 cut(s)	95, 186, 203
HspAI	GCGC	1 cut(s)	309
LmnI	GCTCC	1 cut(s)	95
LpnPI	CCDG	9 cut(s)	51, 191, 203, 319, 341, 363, 406, 549, 573
Lsp1109I	GCAGC	4 cut(s)	115, 124, 217, 406
LweI	GCATC	3 cut(s)	195, 254, 350
MaeI	CTAG	1 cut(s)	348
MaeII	ACGT	1 cut(s)	212
MaeIII	GTNAC	3 cut(s)	83, 208, 617
MboII	GAAGA	2 cut(s)	161, 517
MhlI	GDGCHC	1 cut(s)	100
MluCI	AATT	5 cut(s)	51, 59, 469, 512, 563
MmeI	TCCRAC	1 cut(s)	426
MnlI	CCTC	9 cut(s)	17, 45, 70, 138, 296, 313, 355, 363, 438
Mph1103I	ATGCAT	1 cut(s)	188
MroXI	GAANNNNTTC	1 cut(s)	453
MseI	TTAA	2 cut(s)	515, 566
MspA1I	CMGCKG	1 cut(s)	106
MwoI	GCNNNNNNNGC	4 cut(s)	227, 308, 333, 425
NcoI	CCATGG	1 cut(s)	91
NdeI	CATATG	1 cut(s)	575
NlaIII	CATG	3 cut(s)	95, 186, 203
NsiI	ATGCAT	1 cut(s)	188
NspI	RCATGY	1 cut(s)	186
NspV	TTCGAA	1 cut(s)	561
PaeI	GCATGC	1 cut(s)	186
PcsI	WCGNNNNNNNCGW	1 cut(s)	470
PdmI	GAANNNNTTC	1 cut(s)	453
PfeI	GAWTC	1 cut(s)	374
PkrI	GCNGC	4 cut(s)	105, 139, 232, 421
Ppu21I	YACGTR	1 cut(s)	213
Psp124BI	GAGCTC	1 cut(s)	100
PspPI	GGNCC	1 cut(s)	358
PstNI	CAGNNNCTG	1 cut(s)	106
PvuII	CAGCTG	1 cut(s)	106
RsaI	GTAC	2 cut(s)	110, 410
RsaNI	GTAC	2 cut(s)	109, 409
SacI	GAGCTC	1 cut(s)	100
SaqAI	TTAA	2 cut(s)	515, 566
SatI	GCNGC	4 cut(s)	104, 138, 231, 420
Sau96I	GGNCC	1 cut(s)	358
SduI	GDGCHC	1 cut(s)	100
SfaNI	GCATC	3 cut(s)	195, 254, 350
SfuI	TTCGAA	1 cut(s)	561
SinI	GGWCC	1 cut(s)	358
SphI	GCATGC	1 cut(s)	186
Sse9I	AATT	5 cut(s)	51, 59, 469, 512, 563
SspI	AATATT	1 cut(s)	453
SspMI	CTAG	1 cut(s)	348
SstI	GAGCTC	1 cut(s)	100
StyI	CCWWGG	1 cut(s)	91
TaaI	ACNGT	2 cut(s)	333, 617
TaiI	ACGT	1 cut(s)	215
TaqI	TCGA	3 cut(s)	5, 549, 561
TasI	AATT	5 cut(s)	51, 59, 469, 512, 563
TatI	WGTACW	2 cut(s)	108, 408
TfiI	GAWTC	1 cut(s)	374
Tru1I	TTAA	2 cut(s)	515, 566
Tru9I	TTAA	2 cut(s)	515, 566
TscAI	CASTG	2 cut(s)	36, 338
TseI	GCWGC	4 cut(s)	103, 137, 230, 419
TspDTI	ATGAA	2 cut(s)	294, 586
TspRI	CASTG	2 cut(s)	36, 338
VpaK11BI	GGWCC	1 cut(s)	358
XapI	RAATTY	2 cut(s)	59, 469
XceI	RCATGY	1 cut(s)	186
XcmI	CCANNNNNNNNNTGG	1 cut(s)	197
XmiI	GTMKAC	1 cut(s)	149
XmnI	GAANNNNTTC	1 cut(s)	453
XspI	CTAG	1 cut(s)	348
Zsp2I	ATGCAT	1 cut(s)	188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.