Rh4CG087700

Golgi to ER traffic protein 4

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0008175
Physical Location & Seq
Forward (+)
15805167 .. 15809789
4623 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG087700.1

Sequence Viewer

Length: 510 bp
ATGTCGAAGGAGAGAGCCAAAAGAGGCACACTGCCTCCAGCCCAAGAGCAAATTGAGAAATTTGAGAAAGTTGTAGAGGAAGGTAACTACCATGGAGCTCAGCAGCTGTACAAATCTATTAGTGCGAGATATGTAGCTGCTCAGAGGTATACTGAAGCTTTAGATATTCTTCAGTCGGGTGCATGCATCCAGTTGAAACATGGGCATGTTACGTGTGGGGCAGAGTTAGCTGCTTTGTTTGTGGATACACTTGTCAAAGCGAGATGCCCTTATGACGATGAAACCCTCGGTCAGTTGCTCGCCTCCAGATTGCTCGCCTCCAGCGTCAAGCACCGCCTCCCTCCAGTCCATCCTTCCCTCTTCTCTGTTGCCTCTGCAGGAGCTCCTTCATGCAAAGCATCCTCTAGTCCTCTAGTCCTTTGCACCGATGATTCTGGGGTCTTTTCGACCAGCCCTTCCAACGAGTACAACCTTGCTGCTTCTGCATTTGAGAGGAATGATGAGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF410

Protein Analysis

169

Amino Acids

18.21

Weight (kDa)

6.2

Isoelectric Point (pI)

53.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GET4 PF04190 48 - 100 1.6e-11 Golgi to ER traffic protein 4
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 149
AciI CCGC 1 cut(s) 334
AcsI RAATTY 1 cut(s) 59
AcuI CTGAAG 2 cut(s) 155, 174
AfaI GTAC 2 cut(s) 110, 467
AflIII ACRYGT 1 cut(s) 212
AgsI TTSAA 1 cut(s) 196
AluBI AGCT 6 cut(s) 98, 106, 137, 158, 230, 383
AluI AGCT 6 cut(s) 98, 106, 137, 158, 230, 383
Alw21I GWGCWC 2 cut(s) 100, 385
AlwNI CAGNNNCTG 1 cut(s) 106
ApeKI GCWGC 4 cut(s) 103, 137, 230, 476
ApoI RAATTY 1 cut(s) 59
BaeI ACNNNNGTAYC 2 cut(s) 237, 270
BanII GRGCYC 2 cut(s) 100, 385
Bbv12I GWGCWC 2 cut(s) 100, 385
BbvI GCAGC 4 cut(s) 115, 124, 217, 463
BccI CCATC 1 cut(s) 357
BciVI GTATCC 1 cut(s) 238
BfaI CTAG 2 cut(s) 405, 413
BfmI CTRYAG 1 cut(s) 375
BfuI GTATCC 1 cut(s) 238
BisI GCNGC 4 cut(s) 104, 138, 231, 477
BlpI GCTNAGC 1 cut(s) 99
BlsI GCNGC 4 cut(s) 105, 139, 232, 478
BmsI GCATC 3 cut(s) 195, 254, 407
BpmI CTGGAG 4 cut(s) 21, 289, 304, 327
Bpu1102I GCTNAGC 1 cut(s) 99
BsaAI YACGTR 1 cut(s) 213
BsaJI CCNNGG 2 cut(s) 91, 286
BsaXI ACNNNNNCTCC 2 cut(s) 19, 49
Bse1I ACTGG 2 cut(s) 190, 344
BseDI CCNNGG 2 cut(s) 91, 286
BseGI GGATG 3 cut(s) 186, 349, 398
BseMII CTCAG 2 cut(s) 113, 155
BseNI ACTGG 2 cut(s) 190, 344
BseXI GCAGC 4 cut(s) 115, 124, 217, 463
BsiHKAI GWGCWC 2 cut(s) 100, 385
Bsp1286I GDGCHC 2 cut(s) 100, 385
Bsp1407I TGTACA 1 cut(s) 108
Bsp1720I GCTNAGC 1 cut(s) 99
Bsp19I CCATGG 1 cut(s) 91
BspACI CCGC 1 cut(s) 334
BspCNI CTCAG 2 cut(s) 112, 154
BspMAI CTGCAG 1 cut(s) 379
BsrGI TGTACA 1 cut(s) 108
BsrI ACTGG 2 cut(s) 190, 344
BssECI CCNNGG 2 cut(s) 91, 286
BssNAI GTATAC 1 cut(s) 150
BssT1I CCWWGG 1 cut(s) 91
Bst1107I GTATAC 1 cut(s) 150
Bst6I CTCTTC 1 cut(s) 365
BstAUI TGTACA 1 cut(s) 108
BstBAI YACGTR 1 cut(s) 213
BstC8I GCNNGC 3 cut(s) 184, 300, 315
BstDEI CTNAG 2 cut(s) 99, 141
BstDSI CCRYGG 1 cut(s) 91
BstF5I GGATG 3 cut(s) 186, 349, 398
BstMWI GCNNNNNNNGC 2 cut(s) 227, 482
BstNSI RCATGY 2 cut(s) 186, 209
BstSFI CTRYAG 1 cut(s) 375
BstV1I GCAGC 4 cut(s) 115, 124, 217, 463
BstZ17I GTATAC 1 cut(s) 150
BsuI GTATCC 1 cut(s) 238
BtgI CCRYGG 1 cut(s) 91
BtsCI GGATG 3 cut(s) 186, 349, 398
BtsI GCAGTG 1 cut(s) 29
BtsIMutI CAGTG 1 cut(s) 29
Cac8I GCNNGC 3 cut(s) 184, 300, 315
CaiI CAGNNNCTG 1 cut(s) 106
CseI GACGC 1 cut(s) 313
Csp6I GTAC 2 cut(s) 109, 466
CviAII CATG 5 cut(s) 92, 183, 200, 206, 390
CviJI RGCY 9 cut(s) 17, 41, 98, 106, 137, 158, 230, 383, 453
CviKI_1 RGCY 9 cut(s) 17, 41, 98, 106, 137, 158, 230, 383, 453
CviQI GTAC 2 cut(s) 109, 466
DdeI CTNAG 2 cut(s) 99, 141
Eam1104I CTCTTC 1 cut(s) 365
EarI CTCTTC 1 cut(s) 365
Ecl136II GAGCTC 2 cut(s) 98, 383
Eco130I CCWWGG 1 cut(s) 91
Eco24I GRGCYC 2 cut(s) 100, 385
Eco53kI GAGCTC 2 cut(s) 98, 383
Eco57I CTGAAG 2 cut(s) 155, 174
EcoICRI GAGCTC 2 cut(s) 98, 383
EcoT14I CCWWGG 1 cut(s) 91
EcoT22I ATGCAT 1 cut(s) 188
EcoT38I GRGCYC 2 cut(s) 100, 385
ErhI CCWWGG 1 cut(s) 91
FaeI CATG 5 cut(s) 95, 186, 203, 209, 393
FaiI YATR 8 cut(s) 93, 132, 150, 184, 201, 207, 273, 391
FatI CATG 5 cut(s) 91, 182, 199, 205, 389
FblI GTMKAC 1 cut(s) 149
Fnu4HI GCNGC 4 cut(s) 104, 138, 231, 477
FokI GGATG 3 cut(s) 173, 336, 385
FriOI GRGCYC 2 cut(s) 100, 385
Fsp4HI GCNGC 4 cut(s) 104, 138, 231, 477
FspBI CTAG 2 cut(s) 405, 413
GluI GCNGC 4 cut(s) 104, 138, 231, 477
GsuI CTGGAG 4 cut(s) 21, 289, 304, 327
HgaI GACGC 1 cut(s) 313
Hin1II CATG 5 cut(s) 95, 186, 203, 209, 393
HindIII AAGCTT 1 cut(s) 156
HinfI GANTC 1 cut(s) 431
Hpy166II GTNNAC 1 cut(s) 150
Hpy188I TCNGA 1 cut(s) 144
Hpy188III TCNNGA 1 cut(s) 306
Hpy8I GTNNAC 1 cut(s) 150
HpyAV CCTTC 4 cut(s) 74, 363, 396, 465
HpyCH4IV ACGT 1 cut(s) 212
HpyCH4V TGCA 6 cut(s) 182, 186, 377, 393, 423, 485
HpyF10VI GCNNNNNNNGC 2 cut(s) 227, 482
HpyF3I CTNAG 2 cut(s) 99, 141
HpySE526I ACGT 1 cut(s) 212
Hsp92II CATG 5 cut(s) 95, 186, 203, 209, 393
LmnI GCTCC 3 cut(s) 95, 380, 388
LpnPI CCDG 8 cut(s) 51, 203, 319, 334, 357, 363, 420, 463
Lsp1109I GCAGC 4 cut(s) 115, 124, 217, 463
LweI GCATC 3 cut(s) 195, 254, 407
MaeI CTAG 2 cut(s) 405, 413
MaeII ACGT 1 cut(s) 212
MaeIII GTNAC 2 cut(s) 83, 208
MboII GAAGA 2 cut(s) 161, 352
MhlI GDGCHC 2 cut(s) 100, 385
MluCI AATT 2 cut(s) 51, 59
MmeI TCCRAC 1 cut(s) 483
Mph1103I ATGCAT 1 cut(s) 188
MslI CAYNNNNRTG 1 cut(s) 204
MspA1I CMGCKG 1 cut(s) 106
MwoI GCNNNNNNNGC 2 cut(s) 227, 482
NcoI CCATGG 1 cut(s) 91
NlaIII CATG 5 cut(s) 95, 186, 203, 209, 393
NsiI ATGCAT 1 cut(s) 188
NspI RCATGY 2 cut(s) 186, 209
PaeI GCATGC 1 cut(s) 186
PcsI WCGNNNNNNNCGW 1 cut(s) 321
PfeI GAWTC 1 cut(s) 431
PkrI GCNGC 4 cut(s) 105, 139, 232, 478
Ppu21I YACGTR 1 cut(s) 213
Psp124BI GAGCTC 2 cut(s) 100, 385
PstI CTGCAG 1 cut(s) 379
PstNI CAGNNNCTG 1 cut(s) 106
PvuII CAGCTG 1 cut(s) 106
RsaI GTAC 2 cut(s) 110, 467
RsaNI GTAC 2 cut(s) 109, 466
RseI CAYNNNNRTG 1 cut(s) 204
SacI GAGCTC 2 cut(s) 100, 385
SatI GCNGC 4 cut(s) 104, 138, 231, 477
SduI GDGCHC 2 cut(s) 100, 385
SfaNI GCATC 3 cut(s) 195, 254, 407
SfcI CTRYAG 1 cut(s) 375
SmiMI CAYNNNNRTG 1 cut(s) 204
SphI GCATGC 1 cut(s) 186
Sse9I AATT 2 cut(s) 51, 59
SsiI CCGC 1 cut(s) 334
SspMI CTAG 2 cut(s) 405, 413
SstI GAGCTC 2 cut(s) 100, 385
StyI CCWWGG 1 cut(s) 91
TaiI ACGT 1 cut(s) 215
TaqI TCGA 2 cut(s) 5, 446
TaqII GACCGA 1 cut(s) 278
TasI AATT 2 cut(s) 51, 59
TatI WGTACW 2 cut(s) 108, 465
TfiI GAWTC 1 cut(s) 431
TscAI CASTG 1 cut(s) 36
TseI GCWGC 4 cut(s) 103, 137, 230, 476
TspDTI ATGAA 2 cut(s) 294, 378
TspRI CASTG 1 cut(s) 36
XapI RAATTY 1 cut(s) 59
XceI RCATGY 2 cut(s) 186, 209
XcmI CCANNNNNNNNNTGG 1 cut(s) 197
XmiI GTMKAC 1 cut(s) 149
XspI CTAG 2 cut(s) 405, 413
Zsp2I ATGCAT 1 cut(s) 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.