Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0008175

Physical Location & Seq

Genomic Coordinates Reverse (-)

53436290 .. 53462859

Gene Structure 26570 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG349200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGAAAATTGCAAAGCATCCTCTAGTCCTCTGCGCCGATGATTCTGGGGTCTTTTCTACCAGCCTTTCCAACGAGTACAACCTTGCTGCTTCTGCATTTGGTCTTGGAAGGAGGGAAATATTTCAGCTAACGAGAAATTCGTGCAAGTTTATATTTGCTGATGATGGAGTGAAGAGAGAATTAAAGGAGATTTTTAGTCCACCAGAACAGAAGCTCAACCAATCTTTCGAATTTAGGGGTTCAAGGATAGTAGAATCGTTTTCAAGAGGAACTTTCAACTTGCCTTCTCTGATCAGTGTGTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004000 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006152 GO:0006154 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009116 GO:0009119 GO:0009163 GO:0009164 GO:0009987 GO:0016787 GO:0016810 GO:0016814 GO:0017144 GO:0018130 GO:0019239 GO:0019438 GO:0019439 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0034656 GO:0042278 GO:0042451 GO:0042454 GO:0042455 GO:0042737 GO:0043094 GO:0043101 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044271 GO:0044281 GO:0044282 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046085 GO:0046102 GO:0046103 GO:0046128 GO:0046129 GO:0046130 GO:0046483 GO:0046700 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0072523 GO:1901135 GO:1901136 GO:1901137 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576 GO:1901657 GO:1901658 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 ko05340 map00230 map01100 map05340

Pfam Domains

Protein Families

A_deaminase

Protein Analysis

101

Amino Acids

11.29

Weight (kDa)

8.71

Isoelectric Point (pI)

45.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
A_deaminase	PF00962	7 - 63	2.2e-08	Adenosine deaminase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0008175)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0149411 RchiOBHm_Chr2g0153331 RchiOBHm_Chr5g0038701 RchiOBHm_Chr5g0051251
rosa_laevigata	RLG00000019964 RLG00000020187 RLG00000028845 RLG00000031303
rosa_multiflora	Rmu_sc0008209.1_g000012
rosa_samantha	Rh2BG092200 Rh2CG094700 Rh2DG128800 Rh2DG223800 Rh2DG416500 Rh3AG050600 Rh3BG051800 Rh3CG051900 Rh3DG052500 Rh4CG087700 Rh5BG349200 Rh5CG265300 Rh7BG161600
rosa_wichuraiana	Rw2G037510 Rw7G005930

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	136, 230
AfaI	GTAC	1 cut(s)	77
AgsI	TTSAA	3 cut(s)	243, 264, 277
AluBI	AGCT	2 cut(s)	127, 214
AluI	AGCT	2 cut(s)	127, 214
ApeKI	GCWGC	1 cut(s)	86
ApoI	RAATTY	2 cut(s)	136, 230
Asp700I	GAANNNNTTC	1 cut(s)	120
AspLEI	GCGC	1 cut(s)	35
AsuII	TTCGAA	1 cut(s)	228
BbvI	GCAGC	1 cut(s)	73
BccI	CCATC	1 cut(s)	158
BclI	TGATCA	1 cut(s)	291
BfaI	CTAG	1 cut(s)	23
BisI	GCNGC	1 cut(s)	87
BlsI	GCNGC	1 cut(s)	88
BmsI	GCATC	1 cut(s)	25
Bpu14I	TTCGAA	1 cut(s)	228
BseGI	GGATG	1 cut(s)	16
BseXI	GCAGC	1 cut(s)	73
Bsp119I	TTCGAA	1 cut(s)	228
Bsp143I	GATC	1 cut(s)	291
BspT104I	TTCGAA	1 cut(s)	228
BssMI	GATC	1 cut(s)	291
Bst6I	CTCTTC	1 cut(s)	167
BstBI	TTCGAA	1 cut(s)	228
BstF5I	GGATG	1 cut(s)	16
BstHHI	GCGC	1 cut(s)	35
BstKTI	GATC	1 cut(s)	294
BstMBI	GATC	1 cut(s)	291
BstMWI	GCNNNNNNNGC	1 cut(s)	92
BstV1I	GCAGC	1 cut(s)	73
BtsCI	GGATG	1 cut(s)	16
BtsIMutI	CAGTG	1 cut(s)	301
CfoI	GCGC	1 cut(s)	35
Csp6I	GTAC	1 cut(s)	76
CviJI	RGCY	3 cut(s)	63, 127, 214
CviKI_1	RGCY	3 cut(s)	63, 127, 214
CviQI	GTAC	1 cut(s)	76
DpnI	GATC	1 cut(s)	293
DpnII	GATC	1 cut(s)	291
Eam1104I	CTCTTC	1 cut(s)	167
EarI	CTCTTC	1 cut(s)	167
FaiI	YATR	1 cut(s)	152
FalI	AAGNNNNNCTT	2 cut(s)	256, 288
FbaI	TGATCA	1 cut(s)	291
Fnu4HI	GCNGC	1 cut(s)	87
FokI	GGATG	1 cut(s)	3
Fsp4HI	GCNGC	1 cut(s)	87
FspBI	CTAG	1 cut(s)	23
GlaI	GCGC	1 cut(s)	34
GluI	GCNGC	1 cut(s)	87
HhaI	GCGC	1 cut(s)	35
Hin6I	GCGC	1 cut(s)	33
HinP1I	GCGC	1 cut(s)	33
HinfI	GANTC	2 cut(s)	41, 254
Hpy166II	GTNNAC	1 cut(s)	200
Hpy188I	TCNGA	1 cut(s)	291
Hpy188III	TCNNGA	2 cut(s)	264, 303
Hpy8I	GTNNAC	1 cut(s)	200
HpyAV	CCTTC	2 cut(s)	102, 294
HpyCH4V	TGCA	3 cut(s)	11, 95, 144
HpyF10VI	GCNNNNNNNGC	1 cut(s)	92
HspAI	GCGC	1 cut(s)	33
Ksp22I	TGATCA	1 cut(s)	291
Kzo9I	GATC	1 cut(s)	291
LpnPI	CCDG	3 cut(s)	30, 73, 216
Lsp1109I	GCAGC	1 cut(s)	73
LweI	GCATC	1 cut(s)	25
MaeI	CTAG	1 cut(s)	23
MalI	GATC	1 cut(s)	293
MboI	GATC	1 cut(s)	291
MboII	GAAGA	1 cut(s)	184
MluCI	AATT	4 cut(s)	6, 136, 179, 230
MmeI	TCCRAC	1 cut(s)	93
MnlI	CCTC	4 cut(s)	30, 38, 105, 260
MroXI	GAANNNNTTC	1 cut(s)	120
MseI	TTAA	1 cut(s)	182
MwoI	GCNNNNNNNGC	1 cut(s)	92
NdeII	GATC	1 cut(s)	291
NspV	TTCGAA	1 cut(s)	228
PcsI	WCGNNNNNNNCGW	1 cut(s)	137
PdmI	GAANNNNTTC	1 cut(s)	120
PfeI	GAWTC	2 cut(s)	41, 254
PkrI	GCNGC	1 cut(s)	88
RsaI	GTAC	1 cut(s)	77
RsaNI	GTAC	1 cut(s)	76
SaqAI	TTAA	1 cut(s)	182
SatI	GCNGC	1 cut(s)	87
Sau3AI	GATC	1 cut(s)	291
SetI	ASST	3 cut(s)	84, 129, 216
SfaNI	GCATC	1 cut(s)	25
SfuI	TTCGAA	1 cut(s)	228
Sse9I	AATT	4 cut(s)	6, 136, 179, 230
SspI	AATATT	1 cut(s)	120
SspMI	CTAG	1 cut(s)	23
TaqI	TCGA	1 cut(s)	228
TasI	AATT	4 cut(s)	6, 136, 179, 230
TatI	WGTACW	1 cut(s)	75
TfiI	GAWTC	2 cut(s)	41, 254
Tru1I	TTAA	1 cut(s)	182
Tru9I	TTAA	1 cut(s)	182
TscAI	CASTG	1 cut(s)	301
TseI	GCWGC	1 cut(s)	86
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	301
XapI	RAATTY	2 cut(s)	136, 230
XmnI	GAANNNNTTC	1 cut(s)	120
XspI	CTAG	1 cut(s)	23

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.