Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0008175

Physical Location & Seq

Genomic Coordinates Reverse (-)

10870407 .. 10878250

Gene Structure 7844 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG128800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGCATCGCAGCGCCTCGGCCGCCTTCTCTCGGCCCTCAACTGTCCCTTCTTGTCTAATTTTCTCCAAGCTAGGGTCCGACTCCGACTTCCTCAACAATGAGCTTCCTAAACAGACAATGCTCTTTTGCAAGCAAAGCCAGTTTAGCCGCCGCGTGGGACCGATCTTCGGGCTGACCAATGTGAAGAACAGCAATCTGATCCCAAATAAGCCCCAGAACCGGCTGGTGCGCTGCAATCGGAGCATCCCCAAGTACCTGTACTTGTGGATGTCCAGTAGCCACGAGATGTTGGCCATGCAGTCCTGCAGCCGTGACGTCATTTTGCGGAACTCAAAGGCCGGGATTGCGGTGCATGGGAACTGGCATTTGTTGACCAGTTACAGAATCTTGTCCAGGGCTTCTGTGGTGTGGTCGATGATGCGTCCTTTGACACTCCTGAGTGCTAGATACACGGCTTACGTTTTGAGAATCAAGGTTGAGGAAGAATCGGTGGAAGTAAATCTTAGTGCAAAGCATCCTCTAGTCCTTTGCACCGATGATTCTGGGGTCTTTTCTACCAGCCTTTCCAACGAGTACAACCTTGCTGCTTCTGCCTTTGGTATGTCCGATGTCACTAGTGCATTTAATATAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004000 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006152 GO:0006154 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009116 GO:0009119 GO:0009163 GO:0009164 GO:0009987 GO:0016787 GO:0016810 GO:0016814 GO:0017144 GO:0018130 GO:0019239 GO:0019438 GO:0019439 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0034656 GO:0042278 GO:0042451 GO:0042454 GO:0042455 GO:0042737 GO:0043094 GO:0043101 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044271 GO:0044281 GO:0044282 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046085 GO:0046102 GO:0046103 GO:0046128 GO:0046129 GO:0046130 GO:0046483 GO:0046700 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0072523 GO:1901135 GO:1901136 GO:1901137 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576 GO:1901657 GO:1901658 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 ko05340 map00230 map01100 map05340

Pfam Domains

Protein Families

A_deaminase

Protein Analysis

211

Amino Acids

23.62

Weight (kDa)

9.74

Isoelectric Point (pI)

56.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008175)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0149411 RchiOBHm_Chr2g0153331 RchiOBHm_Chr5g0038701 RchiOBHm_Chr5g0051251
rosa_laevigata	RLG00000019964 RLG00000020187 RLG00000028845 RLG00000031303
rosa_multiflora	Rmu_sc0008209.1_g000012
rosa_samantha	Rh2BG092200 Rh2CG094700 Rh2DG128800 Rh2DG223800 Rh2DG416500 Rh3AG050600 Rh3BG051800 Rh3CG051900 Rh3DG052500 Rh4CG087700 Rh5BG349200 Rh5CG265300 Rh7BG161600
rosa_wichuraiana	Rw2G037510 Rw7G005930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	318
AccII	CGCG	1 cut(s)	153
AciI	CCGC	5 cut(s)	21, 148, 151, 325, 347
AclWI	GGATC	1 cut(s)	193
AcoI	YGGCCR	2 cut(s)	18, 291
AcyI	GRCGYC	1 cut(s)	315
AfaI	GTAC	3 cut(s)	254, 260, 575
AfiI	CCNNNNNNNGG	5 cut(s)	30, 72, 154, 167, 219
AhlI	ACTAGT	1 cut(s)	614
AjnI	CCWGG	1 cut(s)	392
AluBI	AGCT	2 cut(s)	70, 103
AluI	AGCT	2 cut(s)	70, 103
AlwI	GGATC	1 cut(s)	193
AoxI	GGCC	4 cut(s)	18, 32, 291, 336
ApeKI	GCWGC	4 cut(s)	9, 231, 306, 584
AspLEI	GCGC	2 cut(s)	14, 231
AspS9I	GGNCC	3 cut(s)	33, 75, 158
AsuC2I	CCSGG	1 cut(s)	340
AvaII	GGWCC	2 cut(s)	75, 158
BalI	TGGCCA	1 cut(s)	293
BauI	CACGAG	1 cut(s)	281
BbvI	GCAGC	4 cut(s)	21, 218, 318, 571
BceAI	ACGGC	2 cut(s)	294, 468
BciT130I	CCWGG	1 cut(s)	394
BcnI	CCSGG	1 cut(s)	340
BcuI	ACTAGT	1 cut(s)	614
BfaI	CTAG	4 cut(s)	71, 444, 521, 615
BfmI	CTRYAG	1 cut(s)	304
BfoI	RGCGCY	1 cut(s)	15
BisI	GCNGC	7 cut(s)	10, 21, 148, 151, 232, 307, 585
BlsI	GCNGC	7 cut(s)	11, 22, 149, 152, 233, 308, 586
Bme1390I	CCNGG	2 cut(s)	340, 394
Bme18I	GGWCC	2 cut(s)	75, 158
BmgT120I	GGNCC	3 cut(s)	33, 75, 158
BmiI	GGNNCC	2 cut(s)	76, 159
BmrFI	CCNGG	2 cut(s)	340, 394
BmsI	GCATC	4 cut(s)	13, 252, 408, 523
BpuMI	CCSGG	1 cut(s)	340
BsaHI	GRCGYC	1 cut(s)	315
BsaJI	CCNNGG	2 cut(s)	15, 393
Bsc4I	CCNNNNNNNGG	5 cut(s)	30, 72, 154, 167, 219
Bse118I	RCCGGY	1 cut(s)	219
Bse1I	ACTGG	4 cut(s)	139, 273, 365, 375
BseBI	CCWGG	1 cut(s)	394
BseDI	CCNNGG	2 cut(s)	15, 393
BseGI	GGATG	3 cut(s)	243, 273, 514
BseLI	CCNNNNNNNGG	5 cut(s)	30, 72, 154, 167, 219
BseMII	CTCAG	1 cut(s)	428
BseNI	ACTGG	4 cut(s)	139, 273, 365, 375
BseX3I	CGGCCG	1 cut(s)	18
BseXI	GCAGC	4 cut(s)	21, 218, 318, 571
Bsh1236I	CGCG	1 cut(s)	153
Bsh1285I	CGRYCG	1 cut(s)	21
BshFI	GGCC	4 cut(s)	20, 34, 293, 338
BsiEI	CGRYCG	1 cut(s)	21
BsiSI	CCGG	2 cut(s)	220, 339
BslFI	GGGAC	2 cut(s)	29, 171
BslI	CCNNNNNNNGG	5 cut(s)	30, 72, 154, 167, 219
BsmFI	GGGAC	2 cut(s)	29, 171
BsnI	GGCC	4 cut(s)	20, 34, 293, 338
Bsp143I	GATC	2 cut(s)	162, 198
BspACI	CCGC	5 cut(s)	21, 148, 151, 325, 347
BspANI	GGCC	4 cut(s)	20, 34, 293, 338
BspCNI	CTCAG	1 cut(s)	429
BspFNI	CGCG	1 cut(s)	153
BspLI	GGNNCC	2 cut(s)	76, 159
BspMAI	CTGCAG	1 cut(s)	308
BspPI	GGATC	1 cut(s)	193
BsrFI	RCCGGY	1 cut(s)	219
BsrI	ACTGG	4 cut(s)	139, 273, 365, 375
BssAI	RCCGGY	1 cut(s)	219
BssECI	CCNNGG	2 cut(s)	15, 393
BssMI	GATC	2 cut(s)	162, 198
BssNI	GRCGYC	1 cut(s)	315
BssSI	CACGAG	1 cut(s)	281
Bst2BI	CACGAG	1 cut(s)	281
Bst2UI	CCWGG	1 cut(s)	394
Bst4CI	ACNGT	1 cut(s)	43
BstACI	GRCGYC	1 cut(s)	315
BstC8I	GCNNGC	1 cut(s)	131
BstDEI	CTNAG	2 cut(s)	437, 503
BstF5I	GGATG	3 cut(s)	243, 273, 514
BstFNI	CGCG	1 cut(s)	153
BstH2I	RGCGCY	1 cut(s)	15
BstHHI	GCGC	2 cut(s)	14, 231
BstKTI	GATC	2 cut(s)	165, 201
BstMBI	GATC	2 cut(s)	162, 198
BstMCI	CGRYCG	1 cut(s)	21
BstMWI	GCNNNNNNNGC	6 cut(s)	20, 135, 144, 240, 344, 590
BstNI	CCWGG	1 cut(s)	394
BstSCI	CCNGG	2 cut(s)	338, 392
BstSFI	CTRYAG	1 cut(s)	304
BstUI	CGCG	1 cut(s)	153
BstV1I	GCAGC	4 cut(s)	21, 218, 318, 571
BstZI	CGGCCG	1 cut(s)	18
BsuRI	GGCC	4 cut(s)	20, 34, 293, 338
BtsCI	GGATG	3 cut(s)	243, 273, 514
Cac8I	GCNNGC	1 cut(s)	131
CfoI	GCGC	2 cut(s)	14, 231
Cfr10I	RCCGGY	1 cut(s)	219
Cfr13I	GGNCC	3 cut(s)	33, 75, 158
CseI	GACGC	1 cut(s)	410
Csp6I	GTAC	3 cut(s)	253, 259, 574
CviAII	CATG	2 cut(s)	295, 353
CviQI	GTAC	3 cut(s)	253, 259, 574
DdeI	CTNAG	2 cut(s)	437, 503
DpnI	GATC	2 cut(s)	164, 200
DpnII	GATC	2 cut(s)	162, 198
EaeI	YGGCCR	2 cut(s)	18, 291
EagI	CGGCCG	1 cut(s)	18
EclXI	CGGCCG	1 cut(s)	18
Eco47I	GGWCC	2 cut(s)	75, 158
Eco52I	CGGCCG	1 cut(s)	18
EcoRII	CCWGG	1 cut(s)	392
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	2 cut(s)	298, 356
FaiI	YATR	4 cut(s)	296, 354, 602, 629
FalI	AAGNNNNNCTT	2 cut(s)	486, 518
FaqI	GGGAC	2 cut(s)	29, 171
FatI	CATG	2 cut(s)	294, 352
Fnu4HI	GCNGC	7 cut(s)	10, 21, 148, 151, 232, 307, 585
FokI	GGATG	3 cut(s)	230, 280, 501
Fsp4HI	GCNGC	7 cut(s)	10, 21, 148, 151, 232, 307, 585
FspBI	CTAG	4 cut(s)	71, 444, 521, 615
GlaI	GCGC	2 cut(s)	13, 230
GluI	GCNGC	7 cut(s)	10, 21, 148, 151, 232, 307, 585
HaeII	RGCGCY	1 cut(s)	15
HaeIII	GGCC	4 cut(s)	20, 34, 293, 338
HapII	CCGG	2 cut(s)	220, 339
HgaI	GACGC	1 cut(s)	410
HhaI	GCGC	2 cut(s)	14, 231
Hin1I	GRCGYC	1 cut(s)	315
Hin1II	CATG	2 cut(s)	298, 356
Hin6I	GCGC	2 cut(s)	12, 229
HinP1I	GCGC	2 cut(s)	12, 229
HincII	GTYRAC	1 cut(s)	372
HindII	GTYRAC	1 cut(s)	372
HinfI	GANTC	5 cut(s)	80, 384, 468, 485, 539
HpaII	CCGG	2 cut(s)	220, 339
Hpy166II	GTNNAC	1 cut(s)	372
Hpy188I	TCNGA	5 cut(s)	79, 85, 198, 240, 607
Hpy188III	TCNNGA	1 cut(s)	436
Hpy8I	GTNNAC	1 cut(s)	372
HpyAV	CCTTC	2 cut(s)	34, 57
HpyCH4III	ACNGT	1 cut(s)	43
HpyCH4IV	ACGT	2 cut(s)	315, 459
HpyCH4V	TGCA	9 cut(s)	4, 129, 234, 298, 306, 352, 509, 531, 620
HpyF10VI	GCNNNNNNNGC	6 cut(s)	20, 135, 144, 240, 344, 590
HpyF3I	CTNAG	2 cut(s)	437, 503
HpySE526I	ACGT	2 cut(s)	315, 459
Hsp92I	GRCGYC	1 cut(s)	315
Hsp92II	CATG	2 cut(s)	298, 356
HspAI	GCGC	2 cut(s)	12, 229
Kzo9I	GATC	2 cut(s)	162, 198
LmnI	GCTCC	1 cut(s)	240
Lsp1109I	GCAGC	4 cut(s)	21, 218, 318, 571
LweI	GCATC	4 cut(s)	13, 252, 408, 523
MaeI	CTAG	4 cut(s)	71, 444, 521, 615
MaeII	ACGT	2 cut(s)	315, 459
MaeIII	GTNAC	3 cut(s)	311, 377, 610
MalI	GATC	2 cut(s)	164, 200
MboI	GATC	2 cut(s)	162, 198
MboII	GAAGA	3 cut(s)	157, 196, 494
MlsI	TGGCCA	1 cut(s)	293
MluCI	AATT	1 cut(s)	57
MluNI	TGGCCA	1 cut(s)	293
MlyI	GAGTC	1 cut(s)	74
MmeI	TCCRAC	3 cut(s)	102, 108, 591
MnlI	CCTC	5 cut(s)	25, 46, 101, 472, 528
Mox20I	TGGCCA	1 cut(s)	293
Mph1103I	ATGCAT	1 cut(s)	6
MscI	TGGCCA	1 cut(s)	293
MseI	TTAA	1 cut(s)	624
Msp20I	TGGCCA	1 cut(s)	293
MspI	CCGG	2 cut(s)	220, 339
MspR9I	CCNGG	2 cut(s)	340, 394
MvaI	CCWGG	1 cut(s)	394
MvnI	CGCG	1 cut(s)	153
MwoI	GCNNNNNNNGC	6 cut(s)	20, 135, 144, 240, 344, 590
NciI	CCSGG	1 cut(s)	340
NdeII	GATC	2 cut(s)	162, 198
NlaIII	CATG	2 cut(s)	298, 356
NlaIV	GGNNCC	2 cut(s)	76, 159
NmeAIII	GCCGAG	1 cut(s)	10
NmuCI	GTSAC	2 cut(s)	311, 610
NsiI	ATGCAT	1 cut(s)	6
PfeI	GAWTC	4 cut(s)	384, 468, 485, 539
PkrI	GCNGC	7 cut(s)	11, 22, 149, 152, 233, 308, 586
PleI	GAGTC	1 cut(s)	74
PpsI	GAGTC	1 cut(s)	74
Psp6I	CCWGG	1 cut(s)	392
PspGI	CCWGG	1 cut(s)	392
PspN4I	GGNNCC	2 cut(s)	76, 159
PspPI	GGNCC	3 cut(s)	33, 75, 158
PstI	CTGCAG	1 cut(s)	308
RsaI	GTAC	3 cut(s)	254, 260, 575
RsaNI	GTAC	3 cut(s)	253, 259, 574
SaqAI	TTAA	1 cut(s)	624
SatI	GCNGC	7 cut(s)	10, 21, 148, 151, 232, 307, 585
Sau3AI	GATC	2 cut(s)	162, 198
Sau96I	GGNCC	3 cut(s)	33, 75, 158
SchI	GAGTC	1 cut(s)	74
ScrFI	CCNGG	2 cut(s)	340, 394
SetI	ASST	7 cut(s)	72, 105, 258, 318, 462, 477, 582
SfaNI	GCATC	4 cut(s)	13, 252, 408, 523
SfcI	CTRYAG	1 cut(s)	304
SinI	GGWCC	2 cut(s)	75, 158
SpeI	ACTAGT	1 cut(s)	614
Sse9I	AATT	1 cut(s)	57
SsiI	CCGC	5 cut(s)	21, 148, 151, 325, 347
SspMI	CTAG	4 cut(s)	71, 444, 521, 615
StyD4I	CCNGG	2 cut(s)	338, 392
TaaI	ACNGT	1 cut(s)	43
TaiI	ACGT	2 cut(s)	318, 462
TaqI	TCGA	1 cut(s)	413
TaqII	GACCGA	1 cut(s)	175
TasI	AATT	1 cut(s)	57
TatI	WGTACW	2 cut(s)	258, 573
TauI	GCSGC	3 cut(s)	23, 150, 153
TfiI	GAWTC	4 cut(s)	384, 468, 485, 539
Tru1I	TTAA	1 cut(s)	624
Tru9I	TTAA	1 cut(s)	624
TseFI	GTSAC	2 cut(s)	311, 610
TseI	GCWGC	4 cut(s)	9, 231, 306, 584
Tsp45I	GTSAC	2 cut(s)	311, 610
VpaK11BI	GGWCC	2 cut(s)	75, 158
XcmI	CCANNNNNNNNNTGG	1 cut(s)	400
XspI	CTAG	4 cut(s)	71, 444, 521, 615
ZraI	GACGTC	1 cut(s)	316
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.