Rh2CG094700

Golgi to ER traffic protein 4

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0008175
Physical Location & Seq
Forward (+)
7739897 .. 7742938
3042 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG094700.1

Sequence Viewer

Length: 450 bp
ATGTCGAAGGAGAGAGCCAAAAGAGGCACATTGCCTCCAGCCCAAGAGCAAATTGAGAAATTTGAGAAAGTTGTAGAGGAAGGTAACTACTATGGAGCTCAGCAGCTGTACAAATCTATTAGTGCGAGATATGTAGCTGCTCAGAGGTATACTGAAGCTTTAGATATTCTTCAGTCGGGTGCATGCATCCAGTTGAAACATGGGCAGGTTACGTGTGGGGCAGAGTTAGCTGCTTTGTTTGTGGATACACTTGTCAAAGCGAGATGCCCTTATGACGATGAAACCCTCGGTCATCTATTTCTTCCATCAAGGCCGATTACATTGCTCGCCAACAGTGCAAAGCATCCTCTAGTCCTCTGCACCGATGATTCTGGGGTCTTATCTACCAGCCCTTCCAACGAGTACAACCTTGCTGCTTCTGCATTTGAATCTTCATTGGTTCCTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF410

Protein Analysis

149

Amino Acids

16.25

Weight (kDa)

5.59

Isoelectric Point (pI)

48.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GET4 PF04190 48 - 99 2.2e-12 Golgi to ER traffic protein 4
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 196
AccI GTMKAC 1 cut(s) 149
AcsI RAATTY 1 cut(s) 59
AcuI CTGAAG 2 cut(s) 155, 174
AfaI GTAC 2 cut(s) 110, 404
AflIII ACRYGT 1 cut(s) 212
AgsI TTSAA 2 cut(s) 196, 428
AluBI AGCT 5 cut(s) 98, 106, 137, 158, 230
AluI AGCT 5 cut(s) 98, 106, 137, 158, 230
Alw21I GWGCWC 1 cut(s) 100
AlwNI CAGNNNCTG 1 cut(s) 106
AoxI GGCC 1 cut(s) 311
ApeKI GCWGC 4 cut(s) 103, 137, 230, 413
ApoI RAATTY 1 cut(s) 59
BaeI ACNNNNGTAYC 2 cut(s) 237, 270
BanII GRGCYC 1 cut(s) 100
Bbv12I GWGCWC 1 cut(s) 100
BbvI GCAGC 4 cut(s) 115, 124, 217, 400
BccI CCATC 1 cut(s) 313
BcgI CGANNNNNNTGC 2 cut(s) 304, 338
BciVI GTATCC 1 cut(s) 238
BfaI CTAG 1 cut(s) 350
BfuAI ACCTGC 1 cut(s) 196
BfuI GTATCC 1 cut(s) 238
BisI GCNGC 4 cut(s) 104, 138, 231, 414
BlpI GCTNAGC 1 cut(s) 99
BlsI GCNGC 4 cut(s) 105, 139, 232, 415
BmiI GGNNCC 1 cut(s) 441
BmsI GCATC 3 cut(s) 195, 254, 352
BpmI CTGGAG 1 cut(s) 21
Bpu1102I GCTNAGC 1 cut(s) 99
BsaAI YACGTR 1 cut(s) 213
BsaJI CCNNGG 1 cut(s) 286
BsaXI ACNNNNNCTCC 2 cut(s) 19, 49
Bse1I ACTGG 1 cut(s) 190
Bse3DI GCAATG 2 cut(s) 29, 320
BseDI CCNNGG 1 cut(s) 286
BseGI GGATG 2 cut(s) 186, 343
BseMI GCAATG 2 cut(s) 29, 320
BseMII CTCAG 2 cut(s) 113, 155
BseNI ACTGG 1 cut(s) 190
BseXI GCAGC 4 cut(s) 115, 124, 217, 400
BsgI GTGCAG 1 cut(s) 343
BshFI GGCC 1 cut(s) 313
BsiHKAI GWGCWC 1 cut(s) 100
BsnI GGCC 1 cut(s) 313
Bsp1286I GDGCHC 1 cut(s) 100
Bsp1407I TGTACA 1 cut(s) 108
Bsp1720I GCTNAGC 1 cut(s) 99
BspANI GGCC 1 cut(s) 313
BspCNI CTCAG 2 cut(s) 112, 154
BspLI GGNNCC 1 cut(s) 441
BspMI ACCTGC 1 cut(s) 196
BsrDI GCAATG 2 cut(s) 29, 320
BsrGI TGTACA 1 cut(s) 108
BsrI ACTGG 1 cut(s) 190
BssECI CCNNGG 1 cut(s) 286
BssNAI GTATAC 1 cut(s) 150
Bst1107I GTATAC 1 cut(s) 150
Bst4CI ACNGT 1 cut(s) 335
BstAUI TGTACA 1 cut(s) 108
BstBAI YACGTR 1 cut(s) 213
BstC8I GCNNGC 2 cut(s) 184, 327
BstDEI CTNAG 2 cut(s) 99, 141
BstF5I GGATG 2 cut(s) 186, 343
BstMWI GCNNNNNNNGC 3 cut(s) 227, 335, 419
BstNSI RCATGY 1 cut(s) 186
BstV1I GCAGC 4 cut(s) 115, 124, 217, 400
BstZ17I GTATAC 1 cut(s) 150
BsuI GTATCC 1 cut(s) 238
BsuRI GGCC 1 cut(s) 313
BtsCI GGATG 2 cut(s) 186, 343
BtsIMutI CAGTG 1 cut(s) 340
BveI ACCTGC 1 cut(s) 196
Cac8I GCNNGC 2 cut(s) 184, 327
CaiI CAGNNNCTG 1 cut(s) 106
Csp6I GTAC 2 cut(s) 109, 403
CviAII CATG 2 cut(s) 183, 200
CviJI RGCY 9 cut(s) 17, 41, 98, 106, 137, 158, 230, 313, 390
CviKI_1 RGCY 9 cut(s) 17, 41, 98, 106, 137, 158, 230, 313, 390
CviQI GTAC 2 cut(s) 109, 403
DdeI CTNAG 2 cut(s) 99, 141
Ecl136II GAGCTC 1 cut(s) 98
Eco24I GRGCYC 1 cut(s) 100
Eco53kI GAGCTC 1 cut(s) 98
Eco57I CTGAAG 2 cut(s) 155, 174
EcoICRI GAGCTC 1 cut(s) 98
EcoT22I ATGCAT 1 cut(s) 188
EcoT38I GRGCYC 1 cut(s) 100
FaeI CATG 2 cut(s) 186, 203
FaiI YATR 6 cut(s) 93, 132, 150, 184, 201, 273
FatI CATG 2 cut(s) 182, 199
FblI GTMKAC 1 cut(s) 149
Fnu4HI GCNGC 4 cut(s) 104, 138, 231, 414
FokI GGATG 2 cut(s) 173, 330
FriOI GRGCYC 1 cut(s) 100
Fsp4HI GCNGC 4 cut(s) 104, 138, 231, 414
FspBI CTAG 1 cut(s) 350
GluI GCNGC 4 cut(s) 104, 138, 231, 414
GsuI CTGGAG 1 cut(s) 21
HaeIII GGCC 1 cut(s) 313
Hin1II CATG 2 cut(s) 186, 203
HindIII AAGCTT 1 cut(s) 156
HinfI GANTC 2 cut(s) 368, 428
Hpy166II GTNNAC 1 cut(s) 150
Hpy188I TCNGA 1 cut(s) 144
Hpy8I GTNNAC 1 cut(s) 150
HpyAV CCTTC 2 cut(s) 74, 402
HpyCH4III ACNGT 1 cut(s) 335
HpyCH4IV ACGT 1 cut(s) 212
HpyCH4V TGCA 5 cut(s) 182, 186, 338, 360, 422
HpyF10VI GCNNNNNNNGC 3 cut(s) 227, 335, 419
HpyF3I CTNAG 2 cut(s) 99, 141
HpySE526I ACGT 1 cut(s) 212
Hsp92II CATG 2 cut(s) 186, 203
LmnI GCTCC 1 cut(s) 95
LpnPI CCDG 5 cut(s) 51, 191, 203, 357, 400
Lsp1109I GCAGC 4 cut(s) 115, 124, 217, 400
LweI GCATC 3 cut(s) 195, 254, 352
MaeI CTAG 1 cut(s) 350
MaeII ACGT 1 cut(s) 212
MaeIII GTNAC 2 cut(s) 83, 208
MboII GAAGA 3 cut(s) 161, 293, 423
MhlI GDGCHC 1 cut(s) 100
MluCI AATT 3 cut(s) 51, 59, 445
MmeI TCCRAC 1 cut(s) 420
MnlI CCTC 7 cut(s) 17, 45, 70, 138, 296, 357, 365
Mph1103I ATGCAT 1 cut(s) 188
MseI TTAA 1 cut(s) 448
MspA1I CMGCKG 1 cut(s) 106
MwoI GCNNNNNNNGC 3 cut(s) 227, 335, 419
NlaIII CATG 2 cut(s) 186, 203
NlaIV GGNNCC 1 cut(s) 441
NsiI ATGCAT 1 cut(s) 188
NspI RCATGY 1 cut(s) 186
PaeI GCATGC 1 cut(s) 186
PfeI GAWTC 2 cut(s) 368, 428
PkrI GCNGC 4 cut(s) 105, 139, 232, 415
Ppu21I YACGTR 1 cut(s) 213
Psp124BI GAGCTC 1 cut(s) 100
PspN4I GGNNCC 1 cut(s) 441
PstNI CAGNNNCTG 1 cut(s) 106
PvuII CAGCTG 1 cut(s) 106
RsaI GTAC 2 cut(s) 110, 404
RsaNI GTAC 2 cut(s) 109, 403
SacI GAGCTC 1 cut(s) 100
SaqAI TTAA 1 cut(s) 448
SatI GCNGC 4 cut(s) 104, 138, 231, 414
SduI GDGCHC 1 cut(s) 100
SfaNI GCATC 3 cut(s) 195, 254, 352
SphI GCATGC 1 cut(s) 186
Sse9I AATT 3 cut(s) 51, 59, 445
SspMI CTAG 1 cut(s) 350
SstI GAGCTC 1 cut(s) 100
TaaI ACNGT 1 cut(s) 335
TaiI ACGT 1 cut(s) 215
TaqI TCGA 1 cut(s) 5
TaqII GACCGA 1 cut(s) 278
TasI AATT 3 cut(s) 51, 59, 445
TatI WGTACW 2 cut(s) 108, 402
TfiI GAWTC 2 cut(s) 368, 428
Tru1I TTAA 1 cut(s) 448
Tru9I TTAA 1 cut(s) 448
TscAI CASTG 1 cut(s) 340
TseI GCWGC 4 cut(s) 103, 137, 230, 413
TspDTI ATGAA 2 cut(s) 294, 423
TspRI CASTG 1 cut(s) 340
XapI RAATTY 1 cut(s) 59
XceI RCATGY 1 cut(s) 186
XcmI CCANNNNNNNNNTGG 1 cut(s) 197
XmiI GTMKAC 1 cut(s) 149
XspI CTAG 1 cut(s) 350
Zsp2I ATGCAT 1 cut(s) 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.