Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0008175

Physical Location & Seq

Genomic Coordinates Reverse (-)

12482002 .. 12489337

Gene Structure 7336 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG161600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGGCCATAGGTAGTGATGTATCTCAACAGCTTTTCATCTTCCTCAGGGGACCAAAGGCCCCTCTTAACCTTTCGTTCTTTGCAGCAATAGTGGTGACCCATTGTGACAATGAAGAAGTGCAGCTATTTTACATTGTCGATGAGTCTGAAAGAGCTCCTGCAGACGATCCTCTGTTGCTATGGTTCAATGGAGGCCCAGGTTGCTCTGGTCTTGCTGGATTCTTTTTTGAGAGTGGTATTTTCTCGTCCTTCATTACATCAGTTTCTGAAAACATGTTGCACAAAGCTATGAATTTCTGCAGAAGTGCAAAGCATCCTCTAGTCCTCTGCACCGATGATTCTGGGGTCTTTTCTACCAGCCCTTCCAACGAGTACAACCTTGCTGCTTCTGCATTTGGTCTTGGAAGGAGGGAAATATTTCAGCTAACGAGAAATTCGTGCAAGTTTATATTTGCAGATGATGGAGTGAAGAGAGAATTAAAGGAGATTTTTAGTTCACCAGAACAGAAGCTCGACCAATCTTTCGAATTTAGGGGCATATGCAGAAACGCTGATCATTTCATAAGTTGTATTATCAACTGCTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004000 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006152 GO:0006154 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009116 GO:0009119 GO:0009163 GO:0009164 GO:0009987 GO:0016787 GO:0016810 GO:0016814 GO:0017144 GO:0018130 GO:0019239 GO:0019438 GO:0019439 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0034656 GO:0042278 GO:0042451 GO:0042454 GO:0042455 GO:0042737 GO:0043094 GO:0043101 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044271 GO:0044281 GO:0044282 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046085 GO:0046102 GO:0046103 GO:0046128 GO:0046129 GO:0046130 GO:0046483 GO:0046700 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0072523 GO:1901135 GO:1901136 GO:1901137 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576 GO:1901657 GO:1901658 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 ko05340 map00230 map01100 map05340

Pfam Domains

Protein Families

A_deaminase

Protein Analysis

195

Amino Acids

21.71

Weight (kDa)

5.05

Isoelectric Point (pI)

47.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S10	PF00450	36 - 82	3.1e-15	Serine carboxypeptidase
A_deaminase	PF00962	78 - 162	1.4e-07	Adenosine deaminase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008175)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0149411 RchiOBHm_Chr2g0153331 RchiOBHm_Chr5g0038701 RchiOBHm_Chr5g0051251
rosa_laevigata	RLG00000019964 RLG00000020187 RLG00000028845 RLG00000031303
rosa_multiflora	Rmu_sc0008209.1_g000012
rosa_samantha	Rh2BG092200 Rh2CG094700 Rh2DG128800 Rh2DG223800 Rh2DG416500 Rh3AG050600 Rh3BG051800 Rh3CG051900 Rh3DG052500 Rh4CG087700 Rh5BG349200 Rh5CG265300 Rh7BG161600
rosa_wichuraiana	Rw2G037510 Rw7G005930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	161
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	3 cut(s)	292, 433, 527
AfaI	GTAC	1 cut(s)	374
AflIII	ACRYGT	1 cut(s)	273
AgsI	TTSAA	1 cut(s)	187
AjnI	CCWGG	1 cut(s)	196
AluBI	AGCT	6 cut(s)	31, 124, 155, 287, 424, 511
AluI	AGCT	6 cut(s)	31, 124, 155, 287, 424, 511
Alw21I	GWGCWC	1 cut(s)	157
AlwI	GGATC	1 cut(s)	161
AlwNI	CAGNNNCTG	1 cut(s)	266
AoxI	GGCC	3 cut(s)	3, 57, 193
ApeKI	GCWGC	3 cut(s)	83, 121, 383
ApoI	RAATTY	3 cut(s)	292, 433, 527
ArsI	GACNNNNNNTTYG	2 cut(s)	506, 538
Asp700I	GAANNNNTTC	1 cut(s)	417
AspS9I	GGNCC	3 cut(s)	50, 58, 194
AsuHPI	GGTGA	2 cut(s)	106, 489
AsuII	TTCGAA	1 cut(s)	525
AvaII	GGWCC	1 cut(s)	50
AxyI	CCTNAGG	1 cut(s)	44
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	157
Bbv12I	GWGCWC	1 cut(s)	157
BbvI	GCAGC	3 cut(s)	95, 133, 370
BccI	CCATC	1 cut(s)	455
BciT130I	CCWGG	1 cut(s)	198
BclI	TGATCA	1 cut(s)	553
BfaI	CTAG	1 cut(s)	320
BfmI	CTRYAG	2 cut(s)	159, 298
BisI	GCNGC	3 cut(s)	84, 122, 384
BlsI	GCNGC	3 cut(s)	85, 123, 385
Bme1390I	CCNGG	1 cut(s)	198
Bme18I	GGWCC	1 cut(s)	50
BmgT120I	GGNCC	3 cut(s)	50, 58, 194
BmiI	GGNNCC	2 cut(s)	51, 60
BmrFI	CCNGG	1 cut(s)	198
BmsI	GCATC	1 cut(s)	322
Bpu14I	TTCGAA	1 cut(s)	525
BsaJI	CCNNGG	1 cut(s)	196
Bse21I	CCTNAGG	1 cut(s)	44
BseBI	CCWGG	1 cut(s)	198
BseDI	CCNNGG	1 cut(s)	196
BseGI	GGATG	1 cut(s)	313
BseMII	CTCAG	1 cut(s)	58
BseXI	GCAGC	3 cut(s)	95, 133, 370
BsgI	GTGCAG	2 cut(s)	140, 313
BshFI	GGCC	3 cut(s)	5, 59, 195
BsiHKAI	GWGCWC	1 cut(s)	157
BslFI	GGGAC	1 cut(s)	63
BsmFI	GGGAC	1 cut(s)	63
BsnI	GGCC	3 cut(s)	5, 59, 195
Bsp119I	TTCGAA	1 cut(s)	525
Bsp1286I	GDGCHC	1 cut(s)	157
Bsp143I	GATC	2 cut(s)	166, 553
BspANI	GGCC	3 cut(s)	5, 59, 195
BspCNI	CTCAG	1 cut(s)	57
BspLI	GGNNCC	2 cut(s)	51, 60
BspMAI	CTGCAG	2 cut(s)	163, 302
BspPI	GGATC	1 cut(s)	161
BspT104I	TTCGAA	1 cut(s)	525
BssECI	CCNNGG	1 cut(s)	196
BssMI	GATC	2 cut(s)	166, 553
Bst2UI	CCWGG	1 cut(s)	198
Bst6I	CTCTTC	1 cut(s)	464
BstBI	TTCGAA	1 cut(s)	525
BstDEI	CTNAG	1 cut(s)	44
BstEII	GGTNACC	1 cut(s)	94
BstF5I	GGATG	1 cut(s)	313
BstKTI	GATC	2 cut(s)	169, 556
BstMBI	GATC	2 cut(s)	166, 553
BstMWI	GCNNNNNNNGC	2 cut(s)	201, 389
BstNI	CCWGG	1 cut(s)	198
BstNSI	RCATGY	1 cut(s)	277
BstPI	GGTNACC	1 cut(s)	94
BstSCI	CCNGG	1 cut(s)	196
BstSFI	CTRYAG	2 cut(s)	159, 298
BstV1I	GCAGC	3 cut(s)	95, 133, 370
Bsu36I	CCTNAGG	1 cut(s)	44
BsuRI	GGCC	3 cut(s)	5, 59, 195
BtsCI	GGATG	1 cut(s)	313
CaiI	CAGNNNCTG	1 cut(s)	266
Cfr13I	GGNCC	3 cut(s)	50, 58, 194
Csp6I	GTAC	1 cut(s)	373
CviAII	CATG	1 cut(s)	274
CviQI	GTAC	1 cut(s)	373
DdeI	CTNAG	1 cut(s)	44
DpnI	GATC	2 cut(s)	168, 555
DpnII	GATC	2 cut(s)	166, 553
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	464
EarI	CTCTTC	1 cut(s)	464
Ecl136II	GAGCTC	1 cut(s)	155
Eco24I	GRGCYC	1 cut(s)	157
Eco47I	GGWCC	1 cut(s)	50
Eco53kI	GAGCTC	1 cut(s)	155
Eco81I	CCTNAGG	1 cut(s)	44
Eco91I	GGTNACC	1 cut(s)	94
EcoICRI	GAGCTC	1 cut(s)	155
EcoO109I	RGGNCCY	1 cut(s)	58
EcoO65I	GGTNACC	1 cut(s)	94
EcoRII	CCWGG	1 cut(s)	196
EcoT38I	GRGCYC	1 cut(s)	157
FaeI	CATG	1 cut(s)	277
FaiI	YATR	8 cut(s)	8, 181, 275, 290, 449, 539, 541, 563
FaqI	GGGAC	1 cut(s)	63
FatI	CATG	1 cut(s)	273
FauNDI	CATATG	1 cut(s)	539
FbaI	TGATCA	1 cut(s)	553
Fnu4HI	GCNGC	3 cut(s)	84, 122, 384
FokI	GGATG	1 cut(s)	300
FriOI	GRGCYC	1 cut(s)	157
Fsp4HI	GCNGC	3 cut(s)	84, 122, 384
FspBI	CTAG	1 cut(s)	320
GluI	GCNGC	3 cut(s)	84, 122, 384
HaeIII	GGCC	3 cut(s)	5, 59, 195
Hin1II	CATG	1 cut(s)	277
HinfI	GANTC	3 cut(s)	143, 219, 338
HphI	GGTGA	2 cut(s)	106, 489
Hpy166II	GTNNAC	1 cut(s)	497
Hpy188I	TCNGA	2 cut(s)	148, 268
Hpy8I	GTNNAC	1 cut(s)	497
HpyAV	CCTTC	3 cut(s)	259, 372, 399
HpyF10VI	GCNNNNNNNGC	2 cut(s)	201, 389
HpyF3I	CTNAG	1 cut(s)	44
Hsp92II	CATG	1 cut(s)	277
Ksp22I	TGATCA	1 cut(s)	553
Kzo9I	GATC	2 cut(s)	166, 553
LmnI	GCTCC	1 cut(s)	160
LpnPI	CCDG	9 cut(s)	31, 171, 183, 192, 201, 210, 327, 370, 513
Lsp1109I	GCAGC	3 cut(s)	95, 133, 370
LweI	GCATC	1 cut(s)	322
MaeI	CTAG	1 cut(s)	320
MaeIII	GTNAC	2 cut(s)	94, 104
MalI	GATC	2 cut(s)	168, 555
MboI	GATC	2 cut(s)	166, 553
MboII	GAAGA	3 cut(s)	31, 125, 481
MhlI	GDGCHC	1 cut(s)	157
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	4 cut(s)	292, 433, 476, 527
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	152
MmeI	TCCRAC	1 cut(s)	390
MnlI	CCTC	7 cut(s)	53, 72, 180, 185, 327, 335, 402
Mox20I	TGGCCA	1 cut(s)	5
MroXI	GAANNNNTTC	1 cut(s)	417
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	66, 479
Msp20I	TGGCCA	1 cut(s)	5
MspR9I	CCNGG	1 cut(s)	198
MvaI	CCWGG	1 cut(s)	198
MwoI	GCNNNNNNNGC	2 cut(s)	201, 389
NdeI	CATATG	1 cut(s)	539
NdeII	GATC	2 cut(s)	166, 553
NlaIII	CATG	1 cut(s)	277
NlaIV	GGNNCC	2 cut(s)	51, 60
NmuCI	GTSAC	2 cut(s)	94, 104
NspI	RCATGY	1 cut(s)	277
NspV	TTCGAA	1 cut(s)	525
PciI	ACATGT	1 cut(s)	273
PcsI	WCGNNNNNNNCGW	1 cut(s)	434
PdmI	GAANNNNTTC	1 cut(s)	417
PfeI	GAWTC	2 cut(s)	219, 338
PkrI	GCNGC	3 cut(s)	85, 123, 385
PleI	GAGTC	1 cut(s)	151
PpsI	GAGTC	1 cut(s)	151
PscI	ACATGT	1 cut(s)	273
Psp124BI	GAGCTC	1 cut(s)	157
Psp6I	CCWGG	1 cut(s)	196
PspEI	GGTNACC	1 cut(s)	94
PspGI	CCWGG	1 cut(s)	196
PspN4I	GGNNCC	2 cut(s)	51, 60
PspPI	GGNCC	3 cut(s)	50, 58, 194
PstI	CTGCAG	2 cut(s)	163, 302
PstNI	CAGNNNCTG	1 cut(s)	266
RsaI	GTAC	1 cut(s)	374
RsaNI	GTAC	1 cut(s)	373
SacI	GAGCTC	1 cut(s)	157
SaqAI	TTAA	2 cut(s)	66, 479
SatI	GCNGC	3 cut(s)	84, 122, 384
Sau3AI	GATC	2 cut(s)	166, 553
Sau96I	GGNCC	3 cut(s)	50, 58, 194
SchI	GAGTC	1 cut(s)	152
ScrFI	CCNGG	1 cut(s)	198
SduI	GDGCHC	1 cut(s)	157
SfaNI	GCATC	1 cut(s)	322
SfcI	CTRYAG	2 cut(s)	159, 298
SfuI	TTCGAA	1 cut(s)	525
SinI	GGWCC	1 cut(s)	50
Sse9I	AATT	4 cut(s)	292, 433, 476, 527
SspI	AATATT	1 cut(s)	417
SspMI	CTAG	1 cut(s)	320
SstI	GAGCTC	1 cut(s)	157
StyD4I	CCNGG	1 cut(s)	196
TaqI	TCGA	3 cut(s)	138, 513, 525
TasI	AATT	4 cut(s)	292, 433, 476, 527
TatI	WGTACW	1 cut(s)	372
TfiI	GAWTC	2 cut(s)	219, 338
Tru1I	TTAA	2 cut(s)	66, 479
Tru9I	TTAA	2 cut(s)	66, 479
TseFI	GTSAC	2 cut(s)	94, 104
TseI	GCWGC	3 cut(s)	83, 121, 383
Tsp45I	GTSAC	2 cut(s)	94, 104
TspDTI	ATGAA	5 cut(s)	25, 126, 241, 305, 550
VpaK11BI	GGWCC	1 cut(s)	50
XapI	RAATTY	3 cut(s)	292, 433, 527
XceI	RCATGY	1 cut(s)	277
XmnI	GAANNNNTTC	1 cut(s)	417
XspI	CTAG	1 cut(s)	320

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.