Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009453.1

Orthogroup ID

OG0006247

Physical Location & Seq

Genomic Coordinates Forward (+)

24974 .. 25961

Gene Structure 988 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009453.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

atgcaggaggcctacggtgacgttttgttccgggcttggaaagtggcagagggggagctgaggagtgagattgagaacggaagggttttgggagggtttataaaccagaggaccactgctggtgtcgagaagcttcttttccagctctccgagcctgtcatatttcgctctttgcaggttgcgaattctaatgttcgtcaaaatgcgctgcatttacttttggacttgttccctcttgaagatcctgattcgactaaagaggttaaagattcattgcttgataagcagttctttttattggggaaattacttgtagatgattgtccagaggtcagagtggttgcagtggaaggttcttgtcgtattcttcatctgttttgggaagtaatcccttcgcctaccatcacaaagttagttactagaatttttgatgatatgtcacatgatactagtcatgaggttaggctttccacactgaatggcactatgtatttgtttggcaatcctctatgtcatcaatttctcaatgtgcttctactcagattggggcatttgatgatggacaatgtcctatcaataagagttgccatggtagaactcctccttctcataagggatattcaaaacttccatttccataaggtagtgaagttagatgtactattatctacgcttgaaaatgatcaatctcaagttgctcagaaaattacctatgggcatgcccttttggagatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Condensin2nSMC

Protein Analysis

245

Amino Acids

27.9

Weight (kDa)

5.57

Isoelectric Point (pI)

32.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006247)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64960 AT1G64960
fragaria_vesca	FvH4_6g31560 FvH4_6g31560
malus_domestica	MD02G1184600.v1.1
prunus_persica	Prupe.6G221900_v2.0.a1 Prupe.6G221900_v2.0.a1 Prupe.6G221900_v2.0.a1 Prupe.6G221900_v2.0.a1 Prupe.6G221900_v2.0.a1
pyrus_communis	pycom02g14970
rosa_chinensis	RchiOBHm_Chr2g0138631
rosa_laevigata	RLG00000019748
rosa_multiflora	Rmu_sc0009453.1_g000003 Rmu_ssc0000210.1_g000002
rosa_roxburghii	Rroxscaffold_2G00106050 Rroxscaffold_2G00106190 Rroxscaffold_2G00106270
rosa_rugosa	Rorug02G0351800
rosa_samantha	Rh2AG401000 Rh2BG406500 Rh2BG407600 Rh2CG387100 Rh2DG420900 Rh2DG421300
rosa_wichuraiana	Rw2G032560 Rw2G032600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	101
Acc36I	ACCTGC	1 cut(s)	166
AclWI	GGATC	1 cut(s)	236
AcsI	RAATTY	2 cut(s)	184, 423
AfaI	GTAC	1 cut(s)	660
AgsI	TTSAA	3 cut(s)	239, 623, 677
AhlI	ACTAGT	1 cut(s)	449
AluBI	AGCT	3 cut(s)	58, 133, 145
AluI	AGCT	3 cut(s)	58, 133, 145
AlwI	GGATC	1 cut(s)	236
AoxI	GGCC	1 cut(s)	9
ApeKI	GCWGC	1 cut(s)	208
ApoI	RAATTY	2 cut(s)	184, 423
AspLEI	GCGC	1 cut(s)	208
AspS9I	GGNCC	1 cut(s)	111
AsuC2I	CCSGG	1 cut(s)	32
AsuHPI	GGTGA	1 cut(s)	29
AvaII	GGWCC	1 cut(s)	111
BbvCI	CCTCAGC	1 cut(s)	59
BbvI	GCAGC	1 cut(s)	195
BccI	CCATC	2 cut(s)	410, 553
BclI	TGATCA	1 cut(s)	682
BcnI	CCSGG	1 cut(s)	32
BcuI	ACTAGT	1 cut(s)	449
BfaI	CTAG	2 cut(s)	420, 450
BfuAI	ACCTGC	1 cut(s)	166
BisI	GCNGC	1 cut(s)	209
BlsI	GCNGC	1 cut(s)	210
Bme1390I	CCNGG	1 cut(s)	32
Bme18I	GGWCC	1 cut(s)	111
BmgT120I	GGNCC	1 cut(s)	111
BmrFI	CCNGG	1 cut(s)	32
Bpu10I	CCTNAGC	1 cut(s)	59
BpuEI	CTTGAG	1 cut(s)	675
BpuMI	CCSGG	1 cut(s)	32
BsaJI	CCNNGG	1 cut(s)	588
Bse3DI	GCAATG	1 cut(s)	272
BseDI	CCNNGG	1 cut(s)	588
BseMI	GCAATG	1 cut(s)	272
BseMII	CTCAG	3 cut(s)	50, 553, 713
BseRI	GAGGAG	2 cut(s)	76, 590
BseXI	GCAGC	1 cut(s)	195
BshFI	GGCC	1 cut(s)	11
BsiSI	CCGG	1 cut(s)	31
BsnI	GGCC	1 cut(s)	11
Bsp143I	GATC	2 cut(s)	241, 682
Bsp19I	CCATGG	1 cut(s)	588
BspANI	GGCC	1 cut(s)	11
BspCNI	CTCAG	3 cut(s)	51, 552, 712
BspHI	TCATGA	1 cut(s)	454
BspMI	ACCTGC	1 cut(s)	166
BspPI	GGATC	1 cut(s)	236
BsrDI	GCAATG	1 cut(s)	272
BssECI	CCNNGG	1 cut(s)	588
BssMI	GATC	2 cut(s)	241, 682
BssT1I	CCWWGG	1 cut(s)	588
Bst4CI	ACNGT	1 cut(s)	17
BstC8I	GCNNGC	1 cut(s)	720
BstDEI	CTNAG	3 cut(s)	59, 539, 699
BstDSI	CCRYGG	1 cut(s)	588
BstHHI	GCGC	1 cut(s)	208
BstKTI	GATC	2 cut(s)	244, 685
BstMBI	GATC	2 cut(s)	241, 682
BstMWI	GCNNNNNNNGC	2 cut(s)	151, 283
BstNSI	RCATGY	1 cut(s)	722
BstSCI	CCNGG	1 cut(s)	30
BstV1I	GCAGC	1 cut(s)	195
BstX2I	RGATCY	1 cut(s)	241
BstYI	RGATCY	1 cut(s)	241
BsuRI	GGCC	1 cut(s)	11
BtgI	CCRYGG	1 cut(s)	588
BtsI	GCAGTG	2 cut(s)	114, 351
BtsIMutI	CAGTG	3 cut(s)	114, 351, 473
BveI	ACCTGC	1 cut(s)	166
Cac8I	GCNNGC	1 cut(s)	720
CciI	TCATGA	1 cut(s)	454
CfoI	GCGC	1 cut(s)	208
Cfr13I	GGNCC	1 cut(s)	111
Csp6I	GTAC	1 cut(s)	659
CviAII	CATG	4 cut(s)	443, 455, 589, 719
CviJI	RGCY	7 cut(s)	11, 35, 58, 133, 145, 154, 466
CviKI_1	RGCY	7 cut(s)	11, 35, 58, 133, 145, 154, 466
CviQI	GTAC	1 cut(s)	659
DdeI	CTNAG	3 cut(s)	59, 539, 699
DpnI	GATC	2 cut(s)	243, 684
DpnII	GATC	2 cut(s)	241, 682
Eco130I	CCWWGG	1 cut(s)	588
Eco147I	AGGCCT	1 cut(s)	11
Eco47I	GGWCC	1 cut(s)	111
EcoRI	GAATTC	1 cut(s)	184
EcoT14I	CCWWGG	1 cut(s)	588
ErhI	CCWWGG	1 cut(s)	588
FaeI	CATG	4 cut(s)	446, 458, 592, 722
FalI	AAGNNNNNCTT	2 cut(s)	275, 307
FatI	CATG	4 cut(s)	442, 454, 588, 718
FbaI	TGATCA	1 cut(s)	682
Fnu4HI	GCNGC	1 cut(s)	209
Fsp4HI	GCNGC	1 cut(s)	209
FspBI	CTAG	2 cut(s)	420, 450
GlaI	GCGC	1 cut(s)	207
GluI	GCNGC	1 cut(s)	209
HaeIII	GGCC	1 cut(s)	11
HapII	CCGG	1 cut(s)	31
HhaI	GCGC	1 cut(s)	208
Hin1II	CATG	4 cut(s)	446, 458, 592, 722
Hin6I	GCGC	1 cut(s)	206
HinP1I	GCGC	1 cut(s)	206
HindIII	AAGCTT	1 cut(s)	131
HinfI	GANTC	2 cut(s)	248, 269
HpaII	CCGG	1 cut(s)	31
HphI	GGTGA	1 cut(s)	29
Hpy188I	TCNGA	4 cut(s)	151, 335, 542, 702
Hpy188III	TCNNGA	5 cut(s)	127, 236, 245, 326, 455
HpyAV	CCTTC	4 cut(s)	75, 344, 402, 614
HpyCH4III	ACNGT	1 cut(s)	17
HpyCH4IV	ACGT	1 cut(s)	21
HpyCH4V	TGCA	4 cut(s)	4, 175, 211, 344
HpyF10VI	GCNNNNNNNGC	2 cut(s)	151, 283
HpyF3I	CTNAG	3 cut(s)	59, 539, 699
HpySE526I	ACGT	1 cut(s)	21
Hsp92II	CATG	4 cut(s)	446, 458, 592, 722
HspAI	GCGC	1 cut(s)	206
Ksp22I	TGATCA	1 cut(s)	682
Kzo9I	GATC	2 cut(s)	241, 682
LmnI	GCTCC	1 cut(s)	55
LpnPI	CCDG	8 cut(s)	44, 105, 119, 155, 161, 168, 258, 339
Lsp1109I	GCAGC	1 cut(s)	195
MaeI	CTAG	2 cut(s)	420, 450
MaeII	ACGT	1 cut(s)	21
MaeIII	GTNAC	3 cut(s)	17, 415, 438
MalI	GATC	2 cut(s)	243, 684
MboI	GATC	2 cut(s)	241, 682
MboII	GAAGA	2 cut(s)	251, 359
MflI	RGATCY	1 cut(s)	241
MluCI	AATT	5 cut(s)	184, 305, 423, 518, 705
MseI	TTAA	1 cut(s)	264
MspI	CCGG	1 cut(s)	31
MspR9I	CCNGG	1 cut(s)	32
MwoI	GCNNNNNNNGC	2 cut(s)	151, 283
NciI	CCSGG	1 cut(s)	32
NcoI	CCATGG	1 cut(s)	588
NdeII	GATC	2 cut(s)	241, 682
NlaIII	CATG	4 cut(s)	446, 458, 592, 722
NmuCI	GTSAC	2 cut(s)	17, 438
NspI	RCATGY	1 cut(s)	722
PaeI	GCATGC	1 cut(s)	722
PagI	TCATGA	1 cut(s)	454
PceI	AGGCCT	1 cut(s)	11
PfeI	GAWTC	2 cut(s)	248, 269
PflFI	GACNNNGTC	1 cut(s)	566
PkrI	GCNGC	1 cut(s)	210
PsiI	TTATAA	1 cut(s)	101
PspPI	GGNCC	1 cut(s)	111
PsuI	RGATCY	1 cut(s)	241
PsyI	GACNNNGTC	1 cut(s)	566
RsaI	GTAC	1 cut(s)	660
RsaNI	GTAC	1 cut(s)	659
SaqAI	TTAA	1 cut(s)	264
SatI	GCNGC	1 cut(s)	209
Sau3AI	GATC	2 cut(s)	241, 682
Sau96I	GGNCC	1 cut(s)	111
ScrFI	CCNGG	1 cut(s)	32
SinI	GGWCC	1 cut(s)	111
SmlI	CTYRAG	1 cut(s)	690
SmoI	CTYRAG	1 cut(s)	690
SpeI	ACTAGT	1 cut(s)	449
SphI	GCATGC	1 cut(s)	722
Sse9I	AATT	5 cut(s)	184, 305, 423, 518, 705
SseBI	AGGCCT	1 cut(s)	11
SspMI	CTAG	2 cut(s)	420, 450
StuI	AGGCCT	1 cut(s)	11
StyD4I	CCNGG	1 cut(s)	30
StyI	CCWWGG	1 cut(s)	588
TaaI	ACNGT	1 cut(s)	17
TaiI	ACGT	1 cut(s)	24
TaqI	TCGA	2 cut(s)	126, 251
TasI	AATT	5 cut(s)	184, 305, 423, 518, 705
TatI	WGTACW	1 cut(s)	658
TfiI	GAWTC	2 cut(s)	248, 269
Tru1I	TTAA	1 cut(s)	264
Tru9I	TTAA	1 cut(s)	264
TscAI	CASTG	3 cut(s)	121, 351, 480
TseFI	GTSAC	2 cut(s)	17, 438
TseI	GCWGC	1 cut(s)	208
Tsp45I	GTSAC	2 cut(s)	17, 438
TspDTI	ATGAA	2 cut(s)	261, 359
TspGWI	ACGGA	1 cut(s)	93
TspRI	CASTG	3 cut(s)	121, 351, 480
Tth111I	GACNNNGTC	1 cut(s)	566
VpaK11BI	GGWCC	1 cut(s)	111
XapI	RAATTY	2 cut(s)	184, 423
XceI	RCATGY	1 cut(s)	722
XspI	CTAG	2 cut(s)	420, 450

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.