Rroxscaffold_2G00106050

Condensin II non structural maintenance of chromosomes subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0006247
Physical Location & Seq
Reverse (-)
29565012 .. 29570312
5301 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00106050.1

Sequence Viewer

Length: 3756 bp
ATGGAGAAGCGGCTCCGCTCCTCTCTCCAATCCTCCGCCGAAGGGTTTCTGACCTCCGCCACCAATCTCAGCCTCAAATCCTCAAAGCCCTCTCTCAAAACCCTAATCCACAAAATCAAACCCTCCTCCGACCTCTCCTCCTCTCTCCCCATCTCTCTCTCCCACTCCATTTCCGACGCCATCCTCTCCTTCCAGACCCTTCTTCTTCAACCCAACCCCAACCCTAGATCCCCTCGCTCTCCCCCCACCAAGCGCCCCCGCAGGTCCAGCCGGAGCTCCAAGACCCGACCCGACCGCGAACCCGAACCAGACCTCCATCCGGACCCGAATCCTGAAGAGGAGAAGCATCAACTGCTCTCGAAGCTTCAGATTCTCGCCTGTATCGCGCAACTATGCGCCGGGCATCCGGCGAAGGCGTTCCAGCCGTTGGATTTGTTGCCGGGAGTTCAAGCGCTTCACGACAATCTGATAATTCTGGAGTCGGACTCGGCGCTGGTATCGGCGATTGCGAGCTTGTGCGAGCAGTGGTGGAAGGAGGAGTTGCCGGGCCGAGAATCGCTGATCTCTCAGTCGCTCCCTTTCTTGCTCTCGAGATCTCTCACTCTGAACAAGAAGGCAGACGTTCACAGAGTCTACGCCCTCCGCGAGGCTTTCACCTGCTTCGATTTCGAGGACGAGAGCATTGAGGACTTGAAGCTGTTGCTAATCCGGTGCGTGATTTCGCCGCTGTTTCTAAAAACAGAGGAGGGGAGGAAGTTTCTGGCGTTTCTGTTTGGGTTGAGTTCGCAGCTGTTGAAGGAGGTTTTGGCTGTGATCAAGTCTCAGATTCCGTTTGGAAGGAAGTCGATGCTGGAGGCCTACGGTGACGTTTTGTTCCGGGCTTGGAAAGTTGCAGAGGGGGAGCTGAGGAGTGAGATTGAGAACGGGTTCTTGCAGGTTTTGATTGAGGGTGCTATACACGCCACCTCTGGAGCATTTGCTGCATCTATTAGAAGGGTTTTGGGAGGGTTTATAAACCAGAGGACCACTGCTGGTGTCGAGAAGCTTCTTTTCCAGCTCTCCGAGCCTGTCATATTTCGCTCTTTGCAGGTTGCAAATTCTAATGTTCGTCAAAATGCGCTGCATTTACTTTTGGACTTGTTCCCTCTTGAAGATCCTGATTCAACTAAAGAGGTTAAAGATTCATTGCTTGATAAGCAGTTCTTTTTATTGGGGAAATTACTTGTAGATGATTGCCCAGAGGTGAGAGTGGTTGCAGTGGAAGGTTCTTGTCGTATTCTTCATCTGTTTTGGGAAGTAATCCCTTCGCCTACCATCACAAAGTTAGTCACTAGAATTTTTGATGATATGTCACATGATACAAGTCATGAGGTTAGGCTTTCCACACTGAATGGCACTATGTATTTGTTTGGCAATCCTCTCTGTCATCAATTTCTCAATGTGCTTCTACCCAGATTGGGGCATTTGATGATGGACAATGTCCTATCAATAAGAGTTGCCATGGTAGATCTCCTCCTTCTCATAAGGGATATTCAAAACTTCCAGTTCCATAAGGTAGTGAAGTTAGATGTACTATTATCTACCCTTGAAAATGATCAATCTCAAGTTGCTCAGAAAATTACAAGGTTGCTTATGCCATCATACTTTCCCTCAAAAGAAACTGTTGAAACAGCATGCAATCGTTGTACTACACTTGTAAAAAGGTCTCCGATGGCTGGAGCAAGGTTTTGTGAATTTGCTGCGTCCCAAGGGGCATCTCTTATGTCTCTGATGGAACTTGTTAGGGTAATGATTACTTTGGTCCTTCCACCTAATAATCTGGATGAACAACAAGTTGAGGGTTTACTTACTTCTTCTTCCAACCTTTGCAATACCCTAGCTGGTGATCCAGTTTTCAAGAAGGAGCTTAAAGAATTCTTTGATGGTGAAAAGTTGAAGTACTTGATTGCTGCTGCACCTACCGGGCCTGCTCAGTCTTGTGTATTCAACATTGTTTCAACTGTCTCTCCTGATGATGTGGCTGGACTTCTTGATGAATGTATGCATCTGGTGACTAATTGTAGTGGTTTATCCAAAAATGTGGAGAAGCAATCTGAAGTGAGGTCTGCTCACAATTTGTTGCTGTCTTGTGATGCGATTGATGGTATGCTGGAAGCTCTAACAGCACTTCTGCAGAAATCAGCCTATCGTTGCCATATTAAATATGGCAGTGAAATTAAGAACTTAAGTGTTTTCTCTGCGAAAAGAAAGAAATCAAAGTCCTCTGGCAAAATTTCAGCTCGACAGAAACATGTTAGTGGAAAAAAAGTCACCAGTTTTGAGGACGATTATTCAGTCGCGGCAGGAATAGCCTGGCAAATCAGGGACTTGCTTGTATCTGTCAATACTCGGAAGGCTATATTGGGATCTCAAACTCTAGAATCTTTACTAATATGTCTAAAGGTCATTTCTGAGGTCAGCATTGTGCAGTGCATGGATTATGAATATGTGGACACATTTCCTGTTTCAGCATATACAGCTCTTGCGCTGCATTTGTCGGTTCAAAATGTCTCTTCCAATAAGAATGACGGGACGGATTCATCAGGGTCTACTTTGGAGCAGACCAAGTTGGAACCGGCATTGGATCATGTGCTTAATTGTACAGAGAAGCTATGTGGAATAGGCGATTCTGGACAGTCTAGCAGAGTTTATTCAGAATCTAAGCATGCTAGTGATAAGTCTGCGAGTCGTCGTGAAAAAAGGCACAGAGAACCTCAAACACATGCCTCCATTGCAAGTGATAGTGGAAATGTATATACTGAACCAAAGAAGTTGGCGAACAAGGTGAAGATGCTTACTGCAGTACAAAGGTTCATGGTTGATGCTGCTACAATAGGTTTTGCTCCTCAAACTCTGGAAAGGTGCTTAAGATCCACATCAGGTCATATACGATGTGTCATATCTACTTTGGAGCAACAACCTCGTGAGCAAATTGATTTTGAGGAGGAAGATTTGAAGGATGTAGTTCTCTGTTTGAAAAGCTCCTCCACCTATGCAGCAAAGTTACTTAATCTAGCTCTTAAAGATGCTACTGAAGCTTCACCACCTCCAGCAGAAGCTTCTGATCTTGCCAACGATATGCTTGATTTAATTATCTCGATTGAATTATATTTGGGCTCAACCTATGCTGGACATGTGGTGGCAGCAGTGAAGCCTTGGGTTCCTGACTTGATTTTGGCATTAGGATCTGGGCACATTATGAAACAGATTATAGGAGAAGAGGGTCAAACGAGTCCAGCTGATCGCATCAGAGTCCACTTTCCATCATGGCTCTTAATTTTAGCCAAGAATGAGCTCTCTGAAGCTAGTGAAGTCCGGCCAGAAGATGATGGAGACTCTGAACCTGAGGAGTTTCCTGCTTTCAAAAAACTTCTTACAATGATTGTCAAATTGTTAAAAGAAAATCTCAGCATGCAGGGTGTGTTTGGGGCGATCTTAATGATTGGCGCTATAGTAGGGCTGGAAAAGAAAAATTTTGGGCTGGTTTTCGGACTTCTACAGTTTGTATGCCTGAAGATATTCAAGCATGATGATAGAGAATGGGGTGATTTGACGTTGGCATTTCTGCAAGATATCTACCCTCAGATCGAGAGAGAAATTGAGGAAGAGTGTGATGAAGATGGAAGGGAAAAACTGGAAAAAGCCAAGGACTTGCTGGAACCTATTTGGTTGTATCATCTGCATGAAACTGGGAGGGTCACTATGATGGAGGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Condensin2nSMC

Protein Analysis

1251

Amino Acids

138.92

Weight (kDa)

5.94

Isoelectric Point (pI)

51.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Condensin2nSMC PF12422 237 - 385 2.1e-56 Condensin II non structural maintenance of chromosomes subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1013
AarI CACCTGC 1 cut(s) 665
Acc36I ACCTGC 4 cut(s) 252, 665, 925, 1078
AccB7I CCANNNNNTGG 1 cut(s) 427
AccBSI CCGCTC 1 cut(s) 18
AccI GTMKAC 2 cut(s) 633, 2588
AccII CGCG 4 cut(s) 297, 386, 645, 2339
AccIII TCCGGA 1 cut(s) 319
AciI CCGC 9 cut(s) 10, 16, 36, 57, 259, 295, 643, 725, 2339
AclWI GGATC 7 cut(s) 222, 1148, 1880, 2413, 2631, 2904, 3232
AcoI YGGCCR 1 cut(s) 3356
AcsI RAATTY 6 cut(s) 1096, 1335, 1733, 1913, 2271, 3511
AcuI CTGAAG 6 cut(s) 350, 354, 2115, 3093, 3360, 3572
AcyI GRCGYC 1 cut(s) 177
AfaI GTAC 5 cut(s) 1572, 1687, 1940, 2641, 2844
AfeI AGCGCT 1 cut(s) 453
AfiI CCNNNNNNNGG 7 cut(s) 42, 319, 427, 646, 1457, 1458, 1715
AflII CTTAAG 2 cut(s) 2224, 2905
AflIII ACRYGT 2 cut(s) 2290, 3172
AjnI CCWGG 1 cut(s) 2351
AjuI GAANNNNNNNTTGG 4 cut(s) 788, 820, 2384, 2416
AloI GAACNNNNNNTCC 2 cut(s) 297, 329
Alw21I GWGCWC 2 cut(s) 278, 3336
Alw26I GTCTC 6 cut(s) 825, 1710, 1770, 2008, 2554, 3366
AlwI GGATC 7 cut(s) 222, 1148, 1880, 2413, 2631, 2904, 3232
Ama87I CYCGRG 1 cut(s) 589
Aor13HI TCCGGA 1 cut(s) 319
Aor51HI AGCGCT 1 cut(s) 453
AoxI GGCC 4 cut(s) 547, 855, 1964, 3356
ApoI RAATTY 6 cut(s) 1096, 1335, 1733, 1913, 2271, 3511
Asp700I GAANNNNTTC 4 cut(s) 45, 416, 926, 3557
AspLEI GCGC 8 cut(s) 255, 388, 398, 454, 493, 1120, 2527, 3488
AspS9I GGNCC 6 cut(s) 264, 322, 547, 1023, 1801, 1964
AsuC2I CCSGG 5 cut(s) 400, 441, 546, 878, 1963
AvaI CYCGRG 1 cut(s) 589
AvaII GGWCC 4 cut(s) 264, 322, 1023, 1801
AxyI CCTNAGG 1 cut(s) 3384
BaeGI GKGCMC 1 cut(s) 3234
BanII GRGCYC 3 cut(s) 278, 3158, 3336
BauI CACGAG 1 cut(s) 2961
Bbv12I GWGCWC 2 cut(s) 278, 3336
BbvCI CCTCAGC 1 cut(s) 905
BceAI ACGGC 1 cut(s) 409
BcgI CGANNNNNNTGC 2 cut(s) 2942, 2976
BciT130I CCWGG 1 cut(s) 2353
BclI TGATCA 2 cut(s) 813, 1594
BcnI CCSGG 5 cut(s) 400, 441, 546, 878, 1963
BcoDI GTCTC 6 cut(s) 825, 1710, 1770, 2008, 2554, 3366
BfaI CTAG 8 cut(s) 225, 1332, 1877, 2417, 2679, 2709, 3053, 3345
BfmI CTRYAG 4 cut(s) 2171, 2838, 3489, 3536
BfoI RGCGCY 4 cut(s) 256, 455, 494, 3489
BfrI CTTAAG 2 cut(s) 2224, 2905
BfuAI ACCTGC 4 cut(s) 252, 665, 925, 1078
BglII AGATCT 2 cut(s) 593, 1507
BmcAI AGTACT 1 cut(s) 1940
Bme1390I CCNGG 6 cut(s) 400, 441, 546, 878, 1963, 2353
Bme18I GGWCC 4 cut(s) 264, 322, 1023, 1801
BmeT110I CYCGRG 1 cut(s) 589
BmgT120I GGNCC 6 cut(s) 264, 322, 547, 1023, 1801, 1964
BmiI GGNNCC 5 cut(s) 14, 324, 2613, 3201, 3699
BmrFI CCNGG 6 cut(s) 400, 441, 546, 878, 1963, 2353
BmrI ACTGGG 1 cut(s) 3738
BmuI ACTGGG 1 cut(s) 3738
BplI GAGNNNNNCTC 4 cut(s) 470, 502, 2092, 2124
BpmI CTGGAG 5 cut(s) 497, 872, 990, 1737, 3072
Bpu10I CCTNAGC 1 cut(s) 905
BpuEI CTTGAG 1 cut(s) 1587
BpuMI CCSGG 5 cut(s) 400, 441, 546, 878, 1963
BsaBI GATNNNNATC 1 cut(s) 2914
BsaHI GRCGYC 1 cut(s) 177
BsaI GGTCTC 1 cut(s) 1710
BsaJI CCNNGG 4 cut(s) 1500, 1747, 3194, 3684
BsaWI WCCGGW 2 cut(s) 319, 708
BsaXI ACNNNNNCTCC 6 cut(s) 122, 152, 297, 327, 1990, 2020
Bsc4I CCNNNNNNNGG 7 cut(s) 42, 319, 427, 646, 1457, 1458, 1715
Bse118I RCCGGY 1 cut(s) 2614
Bse1I ACTGG 5 cut(s) 1543, 1889, 2313, 3678, 3733
Bse21I CCTNAGG 1 cut(s) 3384
Bse3DI GCAATG 2 cut(s) 1184, 2769
Bse8I GATNNNNATC 1 cut(s) 2914
BseAI TCCGGA 1 cut(s) 319
BseBI CCWGG 1 cut(s) 2353
BseDI CCNNGG 4 cut(s) 1500, 1747, 3194, 3684
BseGI GGATG 5 cut(s) 180, 316, 403, 1828, 3004
BseJI GATNNNNATC 1 cut(s) 2914
BseLI CCNNNNNNNGG 7 cut(s) 42, 319, 427, 646, 1457, 1458, 1715
BseMI GCAATG 2 cut(s) 1184, 2769
BseNI ACTGG 5 cut(s) 1543, 1889, 2313, 3678, 3733
BseSI GKGCMC 1 cut(s) 3234
BsgI GTGCAG 2 cut(s) 1938, 2486
Bsh1236I CGCG 4 cut(s) 297, 386, 645, 2339
Bsh1285I CGRYCG 1 cut(s) 295
BshFI GGCC 4 cut(s) 549, 857, 1966, 3358
BsiEI CGRYCG 1 cut(s) 295
BsiHKAI GWGCWC 2 cut(s) 278, 3336
BsiHKCI CYCGRG 1 cut(s) 589
BslFI GGGAC 3 cut(s) 1729, 2378, 2584
BslI CCNNNNNNNGG 7 cut(s) 42, 319, 427, 646, 1457, 1458, 1715
BsmAI GTCTC 6 cut(s) 825, 1710, 1770, 2008, 2554, 3366
BsmFI GGGAC 3 cut(s) 1729, 2378, 2584
BsnI GGCC 4 cut(s) 549, 857, 1966, 3358
Bso31I GGTCTC 1 cut(s) 1710
BsoBI CYCGRG 1 cut(s) 589
Bsp1286I GDGCHC 4 cut(s) 278, 3158, 3234, 3336
Bsp13I TCCGGA 1 cut(s) 319
Bsp1407I TGTACA 1 cut(s) 2639
Bsp19I CCATGG 1 cut(s) 1500
BspACI CCGC 9 cut(s) 10, 16, 36, 57, 259, 295, 643, 725, 2339
BspANI GGCC 4 cut(s) 549, 857, 1966, 3358
BspEI TCCGGA 1 cut(s) 319
BspFNI CGCG 4 cut(s) 297, 386, 645, 2339
BspHI TCATGA 1 cut(s) 1366
BspLI GGNNCC 5 cut(s) 14, 324, 2613, 3201, 3699
BspMAI CTGCAG 2 cut(s) 2175, 2842
BspMI ACCTGC 4 cut(s) 252, 665, 925, 1078
BspPI GGATC 7 cut(s) 222, 1148, 1880, 2413, 2631, 2904, 3232
BspTI CTTAAG 2 cut(s) 2224, 2905
BspTNI GGTCTC 1 cut(s) 1710
BsrBI CCGCTC 1 cut(s) 18
BsrDI GCAATG 2 cut(s) 1184, 2769
BsrFI RCCGGY 1 cut(s) 2614
BsrGI TGTACA 1 cut(s) 2639
BsrI ACTGG 5 cut(s) 1543, 1889, 2313, 3678, 3733
BssAI RCCGGY 1 cut(s) 2614
BssECI CCNNGG 4 cut(s) 1500, 1747, 3194, 3684
BssNI GRCGYC 1 cut(s) 177
BssSI CACGAG 1 cut(s) 2961
BssT1I CCWWGG 4 cut(s) 1500, 1747, 3194, 3684
Bst2BI CACGAG 1 cut(s) 2961
Bst2UI CCWGG 1 cut(s) 2353
Bst4CI ACNGT 5 cut(s) 863, 1663, 2002, 2676, 3540
Bst6I CTCTTC 4 cut(s) 330, 2557, 3252, 3639
BstACI GRCGYC 1 cut(s) 177
BstAFI CTTAAG 2 cut(s) 2224, 2905
BstAPI GCANNNNNTGC 2 cut(s) 352, 980
BstAUI TGTACA 1 cut(s) 2639
BstC8I GCNNGC 6 cut(s) 511, 521, 1675, 1968, 2706, 3452
BstDSI CCRYGG 1 cut(s) 1500
BstENI CCTNNNNNAGG 1 cut(s) 644
BstF5I GGATG 5 cut(s) 180, 316, 403, 1828, 3004
BstFNI CGCG 4 cut(s) 297, 386, 645, 2339
BstH2I RGCGCY 4 cut(s) 256, 455, 494, 3489
BstHHI GCGC 8 cut(s) 255, 388, 398, 454, 493, 1120, 2527, 3488
BstMAI GTCTC 6 cut(s) 825, 1710, 1770, 2008, 2554, 3366
BstMCI CGRYCG 1 cut(s) 295
BstNI CCWGG 1 cut(s) 2353
BstNSI RCATGY 6 cut(s) 1677, 2294, 2708, 2765, 3176, 3454
BstSCI CCNGG 6 cut(s) 398, 439, 544, 876, 1961, 2351
BstSFI CTRYAG 4 cut(s) 2171, 2838, 3489, 3536
BstSLI GKGCMC 1 cut(s) 3234
BstUI CGCG 4 cut(s) 297, 386, 645, 2339
BstX2I RGATCY 7 cut(s) 227, 593, 1153, 1507, 2405, 2909, 3224
BstXI CCANNNNNNTGG 1 cut(s) 2080
BstYI RGATCY 7 cut(s) 227, 593, 1153, 1507, 2405, 2909, 3224
Bsu36I CCTNAGG 1 cut(s) 3384
BsuRI GGCC 4 cut(s) 549, 857, 1966, 3358
BtgI CCRYGG 1 cut(s) 1500
BtsCI GGATG 5 cut(s) 180, 316, 403, 1828, 3004
BtsI GCAGTG 6 cut(s) 530, 1026, 1263, 2215, 2474, 3192
BtsIMutI CAGTG 7 cut(s) 530, 1026, 1263, 1385, 2215, 2474, 3192
BveI ACCTGC 4 cut(s) 252, 665, 925, 1078
Cac8I GCNNGC 6 cut(s) 511, 521, 1675, 1968, 2706, 3452
CciI TCATGA 1 cut(s) 1366
CfoI GCGC 8 cut(s) 255, 388, 398, 454, 493, 1120, 2527, 3488
Cfr10I RCCGGY 1 cut(s) 2614
Cfr13I GGNCC 6 cut(s) 264, 322, 547, 1023, 1801, 1964
CseI GACGC 2 cut(s) 185, 1731
Csp6I GTAC 5 cut(s) 1571, 1686, 1939, 2640, 2843
CviQI GTAC 5 cut(s) 1571, 1686, 1939, 2640, 2843
EaeI YGGCCR 1 cut(s) 3356
Eam1104I CTCTTC 4 cut(s) 330, 2557, 3252, 3639
EarI CTCTTC 4 cut(s) 330, 2557, 3252, 3639
EciI GGCGGA 2 cut(s) 25, 46
Ecl136II GAGCTC 2 cut(s) 276, 3334
Eco130I CCWWGG 4 cut(s) 1500, 1747, 3194, 3684
Eco147I AGGCCT 1 cut(s) 857
Eco24I GRGCYC 3 cut(s) 278, 3158, 3336
Eco31I GGTCTC 1 cut(s) 1710
Eco32I GATATC 1 cut(s) 3613
Eco47I GGWCC 4 cut(s) 264, 322, 1023, 1801
Eco47III AGCGCT 1 cut(s) 453
Eco53kI GAGCTC 2 cut(s) 276, 3334
Eco57I CTGAAG 6 cut(s) 350, 354, 2115, 3093, 3360, 3572
Eco81I CCTNAGG 1 cut(s) 3384
Eco88I CYCGRG 1 cut(s) 589
EcoICRI GAGCTC 2 cut(s) 276, 3334
EcoNI CCTNNNNNAGG 1 cut(s) 644
EcoRI GAATTC 1 cut(s) 1913
EcoRII CCWGG 1 cut(s) 2351
EcoRV GATATC 1 cut(s) 3613
EcoT14I CCWWGG 4 cut(s) 1500, 1747, 3194, 3684
EcoT22I ATGCAT 1 cut(s) 2046
EcoT38I GRGCYC 3 cut(s) 278, 3158, 3336
ErhI CCWWGG 4 cut(s) 1500, 1747, 3194, 3684
FalI AAGNNNNNCTT 2 cut(s) 1187, 1219
FaqI GGGAC 3 cut(s) 1729, 2378, 2584
FauI CCCGC 1 cut(s) 266
FbaI TGATCA 2 cut(s) 813, 1594
FblI GTMKAC 2 cut(s) 633, 2588
FokI GGATG 5 cut(s) 167, 303, 390, 1835, 3011
FriOI GRGCYC 3 cut(s) 278, 3158, 3336
FspBI CTAG 8 cut(s) 225, 1332, 1877, 2417, 2679, 2709, 3053, 3345
GlaI GCGC 8 cut(s) 254, 387, 397, 453, 492, 1119, 2526, 3487
GsuI CTGGAG 5 cut(s) 497, 872, 990, 1737, 3072
HaeII RGCGCY 4 cut(s) 256, 455, 494, 3489
HaeIII GGCC 4 cut(s) 549, 857, 1966, 3358
HgaI GACGC 2 cut(s) 185, 1731
HhaI GCGC 8 cut(s) 255, 388, 398, 454, 493, 1120, 2527, 3488
Hin1I GRCGYC 1 cut(s) 177
Hin6I GCGC 8 cut(s) 253, 386, 396, 452, 491, 1118, 2525, 3486
HinP1I GCGC 8 cut(s) 253, 386, 396, 452, 491, 1118, 2525, 3486
HindIII AAGCTT 4 cut(s) 362, 1043, 3075, 3096
Hpy166II GTNNAC 6 cut(s) 625, 634, 1844, 2491, 2589, 3295
Hpy8I GTNNAC 6 cut(s) 625, 634, 1844, 2491, 2589, 3295
Hpy99I CGWCG 2 cut(s) 179, 2733
HpyCH4III ACNGT 5 cut(s) 863, 1663, 2002, 2676, 3540
HpyCH4IV ACGT 3 cut(s) 621, 867, 3593
HpySE526I ACGT 3 cut(s) 621, 867, 3593
Hsp92I GRCGYC 1 cut(s) 177
HspAI GCGC 8 cut(s) 253, 386, 396, 452, 491, 1118, 2525, 3486
Kpn2I TCCGGA 1 cut(s) 319
Ksp22I TGATCA 2 cut(s) 813, 1594
MaeI CTAG 8 cut(s) 225, 1332, 1877, 2417, 2679, 2709, 3053, 3345
MaeII ACGT 3 cut(s) 621, 867, 3593
MaeIII GTNAC 7 cut(s) 863, 1327, 1350, 2050, 2308, 3042, 3736
MbiI CCGCTC 1 cut(s) 18
MflI RGATCY 7 cut(s) 227, 593, 1153, 1507, 2405, 2909, 3224
MhlI GDGCHC 4 cut(s) 278, 3158, 3234, 3336
MlyI GAGTC 7 cut(s) 479, 488, 639, 2734, 3280, 3300, 3368
MmeI TCCRAC 6 cut(s) 153, 198, 408, 462, 1884, 2589
Mph1103I ATGCAT 1 cut(s) 2046
MroI TCCGGA 1 cut(s) 319
MroXI GAANNNNTTC 4 cut(s) 45, 416, 926, 3557
MslI CAYNNNNRTG 4 cut(s) 2295, 2709, 3720, 3743
MspA1I CMGCKG 3 cut(s) 727, 790, 3278
MspCI CTTAAG 2 cut(s) 2224, 2905
MspR9I CCNGG 6 cut(s) 400, 441, 546, 878, 1963, 2353
MvaI CCWGG 1 cut(s) 2353
MvnI CGCG 4 cut(s) 297, 386, 645, 2339
NciI CCSGG 5 cut(s) 400, 441, 546, 878, 1963
NcoI CCATGG 1 cut(s) 1500
NlaIV GGNNCC 5 cut(s) 14, 324, 2613, 3201, 3699
NmeAIII GCCGAG 2 cut(s) 467, 575
NmuCI GTSAC 6 cut(s) 863, 1327, 1350, 2050, 2308, 3736
NsiI ATGCAT 1 cut(s) 2046
NspI RCATGY 6 cut(s) 1677, 2294, 2708, 2765, 3176, 3454
PaeI GCATGC 3 cut(s) 1677, 2708, 3454
PaeR7I CTCGAG 1 cut(s) 589
PagI TCATGA 1 cut(s) 1366
PaqCI CACCTGC 1 cut(s) 665
PceI AGGCCT 1 cut(s) 857
PciI ACATGT 2 cut(s) 2290, 3172
PcsI WCGNNNNNNNCGW 2 cut(s) 506, 642
PdmI GAANNNNTTC 4 cut(s) 45, 416, 926, 3557
PflFI GACNNNGTC 1 cut(s) 1478
PflMI CCANNNNNTGG 1 cut(s) 427
PleI GAGTC 7 cut(s) 479, 487, 638, 2733, 3279, 3299, 3368
PpsI GAGTC 7 cut(s) 479, 487, 638, 2733, 3279, 3299, 3368
PscI ACATGT 2 cut(s) 2290, 3172
PsiI TTATAA 1 cut(s) 1013
Psp124BI GAGCTC 2 cut(s) 278, 3336
Psp6I CCWGG 1 cut(s) 2351
PspGI CCWGG 1 cut(s) 2351
PspN4I GGNNCC 5 cut(s) 14, 324, 2613, 3201, 3699
PspPI GGNCC 6 cut(s) 264, 322, 547, 1023, 1801, 1964
PstI CTGCAG 2 cut(s) 2175, 2842
PsuI RGATCY 7 cut(s) 227, 593, 1153, 1507, 2405, 2909, 3224
PsyI GACNNNGTC 1 cut(s) 1478
PvuII CAGCTG 2 cut(s) 790, 3278
RsaI GTAC 5 cut(s) 1572, 1687, 1940, 2641, 2844
RsaNI GTAC 5 cut(s) 1571, 1686, 1939, 2640, 2843
RseI CAYNNNNRTG 4 cut(s) 2295, 2709, 3720, 3743
SacI GAGCTC 2 cut(s) 278, 3336
Sau96I GGNCC 6 cut(s) 264, 322, 547, 1023, 1801, 1964
ScaI AGTACT 1 cut(s) 1940
SchI GAGTC 7 cut(s) 479, 488, 639, 2734, 3280, 3300, 3368
ScrFI CCNGG 6 cut(s) 400, 441, 546, 878, 1963, 2353
SduI GDGCHC 4 cut(s) 278, 3158, 3234, 3336
SfcI CTRYAG 4 cut(s) 2171, 2838, 3489, 3536
Sfr274I CTCGAG 1 cut(s) 589
SinI GGWCC 4 cut(s) 264, 322, 1023, 1801
SlaI CTCGAG 1 cut(s) 589
SmiMI CAYNNNNRTG 4 cut(s) 2295, 2709, 3720, 3743
SmlI CTYRAG 4 cut(s) 589, 1602, 2224, 2905
SmoI CTYRAG 4 cut(s) 589, 1602, 2224, 2905
SphI GCATGC 3 cut(s) 1677, 2708, 3454
SseBI AGGCCT 1 cut(s) 857
SsiI CCGC 9 cut(s) 10, 16, 36, 57, 259, 295, 643, 725, 2339
SspMI CTAG 8 cut(s) 225, 1332, 1877, 2417, 2679, 2709, 3053, 3345
SstI GAGCTC 2 cut(s) 278, 3336
StuI AGGCCT 1 cut(s) 857
StyD4I CCNGG 6 cut(s) 398, 439, 544, 876, 1961, 2351
StyI CCWWGG 4 cut(s) 1500, 1747, 3194, 3684
TaaI ACNGT 5 cut(s) 863, 1663, 2002, 2676, 3540
TaiI ACGT 3 cut(s) 624, 870, 3596
TaqI TCGA 9 cut(s) 359, 590, 663, 669, 845, 1038, 2281, 3137, 3627
TatI WGTACW 5 cut(s) 1570, 1685, 1938, 2639, 2842
TauI GCSGC 3 cut(s) 13, 727, 2342
TscAI CASTG 7 cut(s) 530, 1033, 1263, 1392, 2215, 2474, 3192
TseFI GTSAC 6 cut(s) 863, 1327, 1350, 2050, 2308, 3736
Tsp45I GTSAC 6 cut(s) 863, 1327, 1350, 2050, 2308, 3736
TspGWI ACGGA 2 cut(s) 819, 2588
TspRI CASTG 7 cut(s) 530, 1033, 1263, 1392, 2215, 2474, 3192
Tth111I GACNNNGTC 1 cut(s) 1478
Van91I CCANNNNNTGG 1 cut(s) 427
Vha464I CTTAAG 2 cut(s) 2224, 2905
VpaK11BI GGWCC 4 cut(s) 264, 322, 1023, 1801
XagI CCTNNNNNAGG 1 cut(s) 644
XapI RAATTY 6 cut(s) 1096, 1335, 1733, 1913, 2271, 3511
XbaI TCTAGA 1 cut(s) 2416
XceI RCATGY 6 cut(s) 1677, 2294, 2708, 2765, 3176, 3454
XcmI CCANNNNNNNNNTGG 2 cut(s) 2201, 3691
XhoI CTCGAG 1 cut(s) 589
XmiI GTMKAC 2 cut(s) 633, 2588
XmnI GAANNNNTTC 4 cut(s) 45, 416, 926, 3557
XspI CTAG 8 cut(s) 225, 1332, 1877, 2417, 2679, 2709, 3053, 3345
ZrmI AGTACT 1 cut(s) 1940
Zsp2I ATGCAT 1 cut(s) 2046
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.