Rh2BG407600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0006247
Physical Location & Seq
Reverse (-)
57783023 .. 57783316
294 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG407600.1

Sequence Viewer

Length: 294 bp
ATGCGCCGGGCATCCGGCGAACGCGTTCCCGCCGTTGGATTTGTTGCCGGGAGTTCAAGCACTTCACGACAGTCTGATAATTCTGGAGTCGGACTCGGCGCTGGTATCGGCGATTACGAGCTTGTGCGAGCAGTGGTGGAAGGAGGAGTTGCCGGGCCGAGAATCACTGATCTCTCAGTCGCTACCTTTCTTGCTCTCGAGAACTCTCACTCTGAACAAGAAGGCAGACGTCCACAGAGTCTACACCCTACGCGAGGCTTTCACCTGCTTCGATTTCAAGGACGAGAGCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

97

Amino Acids

10.3

Weight (kDa)

8.55

Isoelectric Point (pI)

48.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 273
AatII GACGTC 1 cut(s) 232
Acc36I ACCTGC 1 cut(s) 273
AccI GTMKAC 1 cut(s) 241
AccII CGCG 2 cut(s) 24, 253
AciI CCGC 1 cut(s) 30
AcyI GRCGYC 1 cut(s) 229
AfiI CCNNNNNNNGG 2 cut(s) 35, 254
AflIII ACRYGT 1 cut(s) 22
AgsI TTSAA 2 cut(s) 57, 278
AluBI AGCT 1 cut(s) 121
AluI AGCT 1 cut(s) 121
Ama87I CYCGRG 1 cut(s) 197
AoxI GGCC 1 cut(s) 155
Asp700I GAANNNNTTC 1 cut(s) 24
AspLEI GCGC 2 cut(s) 6, 101
AspS9I GGNCC 1 cut(s) 155
AsuC2I CCSGG 3 cut(s) 8, 49, 154
AsuHPI GGTGA 1 cut(s) 254
AvaI CYCGRG 1 cut(s) 197
BceAI ACGGC 1 cut(s) 17
BcnI CCSGG 3 cut(s) 8, 49, 154
BfoI RGCGCY 1 cut(s) 102
BfuAI ACCTGC 1 cut(s) 273
Bme1390I CCNGG 3 cut(s) 8, 49, 154
BmeT110I CYCGRG 1 cut(s) 197
BmgT120I GGNCC 1 cut(s) 155
BmrFI CCNGG 3 cut(s) 8, 49, 154
BmsI GCATC 1 cut(s) 20
BplI GAGNNNNNCTC 2 cut(s) 78, 110
BpmI CTGGAG 1 cut(s) 105
BpuMI CCSGG 3 cut(s) 8, 49, 154
BsaHI GRCGYC 1 cut(s) 229
Bsc4I CCNNNNNNNGG 2 cut(s) 35, 254
BseGI GGATG 1 cut(s) 11
BseLI CCNNNNNNNGG 2 cut(s) 35, 254
BseMII CTCAG 1 cut(s) 189
BseRI GAGGAG 1 cut(s) 159
Bsh1236I CGCG 2 cut(s) 24, 253
BshFI GGCC 1 cut(s) 157
BsiHKCI CYCGRG 1 cut(s) 197
BsiSI CCGG 4 cut(s) 7, 15, 48, 153
BslI CCNNNNNNNGG 2 cut(s) 35, 254
BsnI GGCC 1 cut(s) 157
BsoBI CYCGRG 1 cut(s) 197
Bsp143I GATC 1 cut(s) 169
BspACI CCGC 1 cut(s) 30
BspANI GGCC 1 cut(s) 157
BspCNI CTCAG 1 cut(s) 188
BspFNI CGCG 2 cut(s) 24, 253
BspMI ACCTGC 1 cut(s) 273
BssMI GATC 1 cut(s) 169
BssNI GRCGYC 1 cut(s) 229
Bst4CI ACNGT 1 cut(s) 72
BstACI GRCGYC 1 cut(s) 229
BstC8I GCNNGC 1 cut(s) 129
BstDEI CTNAG 1 cut(s) 175
BstENI CCTNNNNNAGG 1 cut(s) 252
BstF5I GGATG 1 cut(s) 11
BstFNI CGCG 2 cut(s) 24, 253
BstH2I RGCGCY 1 cut(s) 102
BstHHI GCGC 2 cut(s) 6, 101
BstKTI GATC 1 cut(s) 172
BstMBI GATC 1 cut(s) 169
BstSCI CCNGG 3 cut(s) 6, 47, 152
BstUI CGCG 2 cut(s) 24, 253
BsuRI GGCC 1 cut(s) 157
BtsCI GGATG 1 cut(s) 11
BtsI GCAGTG 1 cut(s) 138
BtsIMutI CAGTG 2 cut(s) 138, 165
BveI ACCTGC 1 cut(s) 273
Cac8I GCNNGC 1 cut(s) 129
CfoI GCGC 2 cut(s) 6, 101
Cfr13I GGNCC 1 cut(s) 155
CviJI RGCY 3 cut(s) 121, 157, 258
CviKI_1 RGCY 3 cut(s) 121, 157, 258
DdeI CTNAG 1 cut(s) 175
DpnI GATC 1 cut(s) 171
DpnII GATC 1 cut(s) 169
Eco88I CYCGRG 1 cut(s) 197
EcoNI CCTNNNNNAGG 1 cut(s) 252
FauI CCCGC 1 cut(s) 37
FblI GTMKAC 1 cut(s) 241
GlaI GCGC 2 cut(s) 5, 100
GsuI CTGGAG 1 cut(s) 105
HaeII RGCGCY 1 cut(s) 102
HaeIII GGCC 1 cut(s) 157
HapII CCGG 4 cut(s) 7, 15, 48, 153
HhaI GCGC 2 cut(s) 6, 101
Hin1I GRCGYC 1 cut(s) 229
Hin6I GCGC 2 cut(s) 4, 99
HinP1I GCGC 2 cut(s) 4, 99
HinfI GANTC 4 cut(s) 87, 93, 162, 238
HpaII CCGG 4 cut(s) 7, 15, 48, 153
HphI GGTGA 1 cut(s) 254
Hpy166II GTNNAC 2 cut(s) 233, 242
Hpy188I TCNGA 3 cut(s) 76, 92, 214
Hpy188III TCNNGA 4 cut(s) 66, 84, 197, 199
Hpy8I GTNNAC 2 cut(s) 233, 242
HpyAV CCTTC 2 cut(s) 134, 215
HpyCH4III ACNGT 1 cut(s) 72
HpyCH4IV ACGT 1 cut(s) 229
HpyF3I CTNAG 1 cut(s) 175
HpySE526I ACGT 1 cut(s) 229
Hsp92I GRCGYC 1 cut(s) 229
HspAI GCGC 2 cut(s) 4, 99
Kzo9I GATC 1 cut(s) 169
LpnPI CCDG 7 cut(s) 20, 28, 61, 69, 87, 166, 278
LweI GCATC 1 cut(s) 20
MaeII ACGT 1 cut(s) 229
MalI GATC 1 cut(s) 171
MboI GATC 1 cut(s) 169
MluCI AATT 1 cut(s) 79
MluI ACGCGT 1 cut(s) 22
MlyI GAGTC 3 cut(s) 87, 96, 247
MmeI TCCRAC 2 cut(s) 16, 70
MnlI CCTC 2 cut(s) 137, 248
MroXI GAANNNNTTC 1 cut(s) 24
MspI CCGG 4 cut(s) 7, 15, 48, 153
MspR9I CCNGG 3 cut(s) 8, 49, 154
MvnI CGCG 2 cut(s) 24, 253
NciI CCSGG 3 cut(s) 8, 49, 154
NdeII GATC 1 cut(s) 169
NmeAIII GCCGAG 2 cut(s) 75, 183
PaeR7I CTCGAG 1 cut(s) 197
PaqCI CACCTGC 1 cut(s) 273
PcsI WCGNNNNNNNCGW 1 cut(s) 114
PdmI GAANNNNTTC 1 cut(s) 24
PfeI GAWTC 1 cut(s) 162
PleI GAGTC 3 cut(s) 87, 95, 246
PpsI GAGTC 3 cut(s) 87, 95, 246
PspPI GGNCC 1 cut(s) 155
Sau3AI GATC 1 cut(s) 169
Sau96I GGNCC 1 cut(s) 155
SchI GAGTC 3 cut(s) 87, 96, 247
ScrFI CCNGG 3 cut(s) 8, 49, 154
SetI ASST 4 cut(s) 123, 188, 232, 267
SfaNI GCATC 1 cut(s) 20
Sfr274I CTCGAG 1 cut(s) 197
SlaI CTCGAG 1 cut(s) 197
SmlI CTYRAG 1 cut(s) 197
SmoI CTYRAG 1 cut(s) 197
Sse9I AATT 1 cut(s) 79
SsiI CCGC 1 cut(s) 30
StyD4I CCNGG 3 cut(s) 6, 47, 152
TaaI ACNGT 1 cut(s) 72
TaiI ACGT 1 cut(s) 232
TaqI TCGA 2 cut(s) 198, 271
TasI AATT 1 cut(s) 79
TfiI GAWTC 1 cut(s) 162
TscAI CASTG 2 cut(s) 138, 172
TspRI CASTG 2 cut(s) 138, 172
XagI CCTNNNNNAGG 1 cut(s) 252
XhoI CTCGAG 1 cut(s) 197
XmiI GTMKAC 1 cut(s) 241
XmnI GAANNNNTTC 1 cut(s) 24
ZraI GACGTC 1 cut(s) 230
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.