Rw2G032560

Condensin II non structural maintenance of chromosomes subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0006247
Physical Location & Seq
Forward (+)
53546342 .. 53547134
793 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G032560.1

Sequence Viewer

Length: 624 bp
ATGCAGGAGGCCTACGGTGACGTTTTGTTCCGGGCTTGGAAAGTGGCAGAGGGGGAGCTGAGGAGTGAGATTGAGAACGGGTTCTTGCAGGTTTTGATTGAGGGTGCTATACACGCCAGCTTTGGAGCATTTGCTGCATCTATTAGAAGGGTTTTGGGAGGGTTTATAAACCAGAGGACCACTGCTGGTGTCGAGAAGCTTCTTTTCCAGCTCTCCGAGCCTGTCATATTTCGCTCTTTGCAGGTTGCGAATTCTAATGTTCGTCAAAATGCGCTGCATTTACTTTTGGACTTGTTCCCTCTTGAAGATCCTGATTCGACTAAAGAGGTTAAAGATTCATTGCTTGATAAGCAGTTCTTTTTATTGGGGAAATTACTTGTAGATGATTGTCCAGAGGTCAGAGTGGTTGCAGTGGAAGGTTCTTGTCGTATTCTTCATCTGTTCTGGGAAGTAATCCCTTCGCCTACCATCACAAAGTTAGTTACTAGAATTTTTGATGATATGTCACATGATACTAGTCATGAGATTGGGGCATTTGATGATGGACAATGTCCTATCAATAAGAGTTGCCATGGTAGATCTCCTCCTTCTCATAAGGGATATTCAAAACTTCCAGTTCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Condensin2nSMC

Protein Analysis

207

Amino Acids

23.04

Weight (kDa)

5.63

Isoelectric Point (pI)

53.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Condensin2nSMC PF12422 3 - 103 1.2e-37 Condensin II non structural maintenance of chromosomes subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 167
Acc36I ACCTGC 2 cut(s) 79, 232
AclWI GGATC 1 cut(s) 302
AcsI RAATTY 2 cut(s) 250, 489
AgsI TTSAA 2 cut(s) 305, 606
AhlI ACTAGT 1 cut(s) 515
AluBI AGCT 4 cut(s) 58, 120, 199, 211
AluI AGCT 4 cut(s) 58, 120, 199, 211
AlwI GGATC 1 cut(s) 302
AoxI GGCC 1 cut(s) 9
ApeKI GCWGC 2 cut(s) 134, 274
ApoI RAATTY 2 cut(s) 250, 489
Asp700I GAANNNNTTC 1 cut(s) 80
AspLEI GCGC 1 cut(s) 274
AspS9I GGNCC 1 cut(s) 177
AsuC2I CCSGG 1 cut(s) 32
AsuHPI GGTGA 1 cut(s) 29
AvaII GGWCC 1 cut(s) 177
BbvCI CCTCAGC 1 cut(s) 59
BbvI GCAGC 2 cut(s) 121, 261
BccI CCATC 2 cut(s) 476, 536
BcnI CCSGG 1 cut(s) 32
BcuI ACTAGT 1 cut(s) 515
BfaI CTAG 2 cut(s) 486, 516
BfuAI ACCTGC 2 cut(s) 79, 232
BglII AGATCT 1 cut(s) 578
BisI GCNGC 2 cut(s) 135, 275
BlsI GCNGC 2 cut(s) 136, 276
Bme1390I CCNGG 1 cut(s) 32
Bme18I GGWCC 1 cut(s) 177
BmgT120I GGNCC 1 cut(s) 177
BmrFI CCNGG 1 cut(s) 32
BmsI GCATC 1 cut(s) 146
Bpu10I CCTNAGC 1 cut(s) 59
BpuMI CCSGG 1 cut(s) 32
BsaJI CCNNGG 1 cut(s) 571
Bse1I ACTGG 1 cut(s) 614
Bse3DI GCAATG 1 cut(s) 338
BseDI CCNNGG 1 cut(s) 571
BseMI GCAATG 1 cut(s) 338
BseMII CTCAG 1 cut(s) 50
BseNI ACTGG 1 cut(s) 614
BseRI GAGGAG 2 cut(s) 76, 573
BseXI GCAGC 2 cut(s) 121, 261
BshFI GGCC 1 cut(s) 11
BsiSI CCGG 1 cut(s) 31
BsnI GGCC 1 cut(s) 11
Bsp143I GATC 2 cut(s) 307, 578
Bsp19I CCATGG 1 cut(s) 571
BspANI GGCC 1 cut(s) 11
BspCNI CTCAG 1 cut(s) 51
BspHI TCATGA 1 cut(s) 520
BspMI ACCTGC 2 cut(s) 79, 232
BspPI GGATC 1 cut(s) 302
BsrDI GCAATG 1 cut(s) 338
BsrI ACTGG 1 cut(s) 614
BssECI CCNNGG 1 cut(s) 571
BssMI GATC 2 cut(s) 307, 578
BssT1I CCWWGG 1 cut(s) 571
Bst4CI ACNGT 1 cut(s) 17
BstAPI GCANNNNNTGC 1 cut(s) 134
BstC8I GCNNGC 1 cut(s) 118
BstDEI CTNAG 1 cut(s) 59
BstDSI CCRYGG 1 cut(s) 571
BstHHI GCGC 1 cut(s) 274
BstKTI GATC 2 cut(s) 310, 581
BstMBI GATC 2 cut(s) 307, 578
BstMWI GCNNNNNNNGC 4 cut(s) 113, 134, 217, 349
BstSCI CCNGG 1 cut(s) 30
BstV1I GCAGC 2 cut(s) 121, 261
BstX2I RGATCY 2 cut(s) 307, 578
BstYI RGATCY 2 cut(s) 307, 578
BsuRI GGCC 1 cut(s) 11
BtgI CCRYGG 1 cut(s) 571
BtsI GCAGTG 2 cut(s) 180, 417
BtsIMutI CAGTG 2 cut(s) 180, 417
BveI ACCTGC 2 cut(s) 79, 232
Cac8I GCNNGC 1 cut(s) 118
CciI TCATGA 1 cut(s) 520
CfoI GCGC 1 cut(s) 274
Cfr13I GGNCC 1 cut(s) 177
CviAII CATG 3 cut(s) 509, 521, 572
CviJI RGCY 7 cut(s) 11, 35, 58, 120, 199, 211, 220
CviKI_1 RGCY 7 cut(s) 11, 35, 58, 120, 199, 211, 220
DdeI CTNAG 1 cut(s) 59
DpnI GATC 2 cut(s) 309, 580
DpnII GATC 2 cut(s) 307, 578
Eco130I CCWWGG 1 cut(s) 571
Eco147I AGGCCT 1 cut(s) 11
Eco47I GGWCC 1 cut(s) 177
EcoRI GAATTC 1 cut(s) 250
EcoT14I CCWWGG 1 cut(s) 571
ErhI CCWWGG 1 cut(s) 571
FaeI CATG 3 cut(s) 512, 524, 575
FaiI YATR 9 cut(s) 110, 167, 227, 503, 510, 522, 573, 594, 622
FalI AAGNNNNNCTT 2 cut(s) 341, 373
FatI CATG 3 cut(s) 508, 520, 571
Fnu4HI GCNGC 2 cut(s) 135, 275
Fsp4HI GCNGC 2 cut(s) 135, 275
FspBI CTAG 2 cut(s) 486, 516
GlaI GCGC 1 cut(s) 273
GluI GCNGC 2 cut(s) 135, 275
HaeIII GGCC 1 cut(s) 11
HapII CCGG 1 cut(s) 31
HhaI GCGC 1 cut(s) 274
Hin1II CATG 3 cut(s) 512, 524, 575
Hin6I GCGC 1 cut(s) 272
HinP1I GCGC 1 cut(s) 272
HindIII AAGCTT 1 cut(s) 197
HinfI GANTC 2 cut(s) 314, 335
HpaII CCGG 1 cut(s) 31
HphI GGTGA 1 cut(s) 29
Hpy188I TCNGA 2 cut(s) 217, 401
Hpy188III TCNNGA 5 cut(s) 193, 302, 311, 392, 521
HpyAV CCTTC 4 cut(s) 141, 410, 468, 597
HpyCH4III ACNGT 1 cut(s) 17
HpyCH4IV ACGT 1 cut(s) 21
HpyCH4V TGCA 6 cut(s) 4, 88, 137, 241, 277, 410
HpyF10VI GCNNNNNNNGC 4 cut(s) 113, 134, 217, 349
HpyF3I CTNAG 1 cut(s) 59
HpySE526I ACGT 1 cut(s) 21
Hsp92II CATG 3 cut(s) 512, 524, 575
HspAI GCGC 1 cut(s) 272
Kzo9I GATC 2 cut(s) 307, 578
LmnI GCTCC 2 cut(s) 55, 125
Lsp1109I GCAGC 2 cut(s) 121, 261
LweI GCATC 1 cut(s) 146
MaeI CTAG 2 cut(s) 486, 516
MaeII ACGT 1 cut(s) 21
MaeIII GTNAC 3 cut(s) 17, 481, 504
MalI GATC 2 cut(s) 309, 580
MboI GATC 2 cut(s) 307, 578
MboII GAAGA 2 cut(s) 317, 425
MflI RGATCY 2 cut(s) 307, 578
MluCI AATT 3 cut(s) 250, 371, 489
MnlI CCTC 9 cut(s) 43, 54, 94, 152, 168, 309, 319, 388, 594
MroXI GAANNNNTTC 1 cut(s) 80
MseI TTAA 1 cut(s) 330
MspI CCGG 1 cut(s) 31
MspR9I CCNGG 1 cut(s) 32
MwoI GCNNNNNNNGC 4 cut(s) 113, 134, 217, 349
NciI CCSGG 1 cut(s) 32
NcoI CCATGG 1 cut(s) 571
NdeII GATC 2 cut(s) 307, 578
NlaIII CATG 3 cut(s) 512, 524, 575
NmuCI GTSAC 2 cut(s) 17, 504
PagI TCATGA 1 cut(s) 520
PceI AGGCCT 1 cut(s) 11
PdmI GAANNNNTTC 1 cut(s) 80
PfeI GAWTC 2 cut(s) 314, 335
PflFI GACNNNGTC 1 cut(s) 549
PkrI GCNGC 2 cut(s) 136, 276
PsiI TTATAA 1 cut(s) 167
PspPI GGNCC 1 cut(s) 177
PsuI RGATCY 2 cut(s) 307, 578
PsyI GACNNNGTC 1 cut(s) 549
SaqAI TTAA 1 cut(s) 330
SatI GCNGC 2 cut(s) 135, 275
Sau3AI GATC 2 cut(s) 307, 578
Sau96I GGNCC 1 cut(s) 177
ScrFI CCNGG 1 cut(s) 32
SfaNI GCATC 1 cut(s) 146
SinI GGWCC 1 cut(s) 177
SpeI ACTAGT 1 cut(s) 515
Sse9I AATT 3 cut(s) 250, 371, 489
SseBI AGGCCT 1 cut(s) 11
SspMI CTAG 2 cut(s) 486, 516
StuI AGGCCT 1 cut(s) 11
StyD4I CCNGG 1 cut(s) 30
StyI CCWWGG 1 cut(s) 571
TaaI ACNGT 1 cut(s) 17
TaiI ACGT 1 cut(s) 24
TaqI TCGA 2 cut(s) 192, 317
TasI AATT 3 cut(s) 250, 371, 489
TfiI GAWTC 2 cut(s) 314, 335
Tru1I TTAA 1 cut(s) 330
Tru9I TTAA 1 cut(s) 330
TscAI CASTG 2 cut(s) 187, 417
TseFI GTSAC 2 cut(s) 17, 504
TseI GCWGC 2 cut(s) 134, 274
Tsp45I GTSAC 2 cut(s) 17, 504
TspDTI ATGAA 2 cut(s) 327, 425
TspRI CASTG 2 cut(s) 187, 417
Tth111I GACNNNGTC 1 cut(s) 549
VpaK11BI GGWCC 1 cut(s) 177
XapI RAATTY 2 cut(s) 250, 489
XmnI GAANNNNTTC 1 cut(s) 80
XspI CTAG 2 cut(s) 486, 516
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.