Rh2DG420900

Condensin II non structural maintenance of chromosomes subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0006247
Physical Location & Seq
Forward (+)
61039133 .. 61039920
788 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG420900.1

Sequence Viewer

Length: 702 bp
ATGGAGAAGCGGCTCCGCTCCTATCTCCAATCCTCCGCCGAAGAGTTTCTGACCTCCGCCACCAAGCTCAGCCTCAAATCCTCAAAGCCCTCTCTCAAAACCCTAATCCGCAAAATCAAACCCTCCTCCGAGAAGCTTCTTTTCCAGCTCTCGGAGCCAGTCATATTTCGCTCTTCGCAGGTTGCTAATTCTAATGTTCGTCAAAATGCGCTGCATTTACTTTTGGACTTGTTCCCTCTTGAAGATCCTGATTCGACTAAAGAGGTTAAAGATTCATTGCTTGATAAGCAGTTCTTTTTATTGGGGAAATTACTTGTAGATGATTGTCCAGAGGTGAGAGTGGTTGCAGTGGAATGTTCTTGTCGTATTCTTCATCTGTTTTGGGAAGTAATCCCTTCCCCTACCATCACAAAGTTAGTTACAAGAATTTCTGATGATATGTCACATGATACAAGTCATGAGGTTAGGCTTTCCACACTGAATGGCACTATGTATTTGTTTGGCAATCCCCTATGTCATCAATTTCTCAATGTGCTTCTACCCAGATTGGGGCATTTGATGATGGACAATGTCCTATCGATAGAAGTTGCCATGGCAGATCTCCTCCTTCTCATAAAGGATATTCAAAATTTCCGTTTCCATAAGGTACAAAGCGCTCTCAGTATTATGCTCCATATAAGTGCTTTGGGAGTTCAATCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Condensin2nSMC

Protein Analysis

233

Amino Acids

26.38

Weight (kDa)

7.74

Isoelectric Point (pI)

46.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Condensin2nSMC PF12422 33 - 82 1.8e-12 Condensin II non structural maintenance of chromosomes subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 169
AccBSI CCGCTC 1 cut(s) 18
AciI CCGC 5 cut(s) 10, 16, 36, 57, 109
AclWI GGATC 1 cut(s) 239
AcsI RAATTY 2 cut(s) 426, 628
AfaI GTAC 1 cut(s) 648
AfeI AGCGCT 1 cut(s) 655
AfiI CCNNNNNNNGG 3 cut(s) 151, 548, 549
AgsI TTSAA 3 cut(s) 242, 626, 695
AluBI AGCT 3 cut(s) 67, 136, 148
AluI AGCT 3 cut(s) 67, 136, 148
AlwI GGATC 1 cut(s) 239
Aor51HI AGCGCT 1 cut(s) 655
ApeKI GCWGC 1 cut(s) 211
ApoI RAATTY 2 cut(s) 426, 628
Asp700I GAANNNNTTC 1 cut(s) 45
AspLEI GCGC 2 cut(s) 211, 656
AsuHPI GGTGA 1 cut(s) 346
BbvI GCAGC 1 cut(s) 198
BccI CCATC 2 cut(s) 413, 556
BfoI RGCGCY 1 cut(s) 657
BfuAI ACCTGC 1 cut(s) 169
BglII AGATCT 1 cut(s) 598
BisI GCNGC 2 cut(s) 11, 212
BlpI GCTNAGC 1 cut(s) 68
BlsI GCNGC 2 cut(s) 12, 213
BmiI GGNNCC 2 cut(s) 14, 156
Bpu1102I GCTNAGC 1 cut(s) 68
Bsa29I ATCGAT 1 cut(s) 578
BsaJI CCNNGG 1 cut(s) 591
Bsc4I CCNNNNNNNGG 3 cut(s) 151, 548, 549
Bse1I ACTGG 1 cut(s) 158
Bse3DI GCAATG 1 cut(s) 275
BseCI ATCGAT 1 cut(s) 578
BseDI CCNNGG 1 cut(s) 591
BseLI CCNNNNNNNGG 3 cut(s) 151, 548, 549
BseMI GCAATG 1 cut(s) 275
BseMII CTCAG 2 cut(s) 82, 673
BseNI ACTGG 1 cut(s) 158
BseRI GAGGAG 2 cut(s) 115, 593
BseXI GCAGC 1 cut(s) 198
BshVI ATCGAT 1 cut(s) 578
BslI CCNNNNNNNGG 3 cut(s) 151, 548, 549
Bsp143I GATC 2 cut(s) 244, 598
Bsp1720I GCTNAGC 1 cut(s) 68
Bsp19I CCATGG 1 cut(s) 591
BspACI CCGC 5 cut(s) 10, 16, 36, 57, 109
BspCNI CTCAG 2 cut(s) 81, 672
BspDI ATCGAT 1 cut(s) 578
BspHI TCATGA 1 cut(s) 457
BspLI GGNNCC 2 cut(s) 14, 156
BspMI ACCTGC 1 cut(s) 169
BspPI GGATC 1 cut(s) 239
BspQI GCTCTTC 1 cut(s) 178
BsrBI CCGCTC 1 cut(s) 18
BsrDI GCAATG 1 cut(s) 275
BsrI ACTGG 1 cut(s) 158
BssECI CCNNGG 1 cut(s) 591
BssMI GATC 2 cut(s) 244, 598
BssT1I CCWWGG 1 cut(s) 591
Bst6I CTCTTC 2 cut(s) 36, 178
BstDEI CTNAG 2 cut(s) 68, 659
BstDSI CCRYGG 1 cut(s) 591
BstH2I RGCGCY 1 cut(s) 657
BstHHI GCGC 2 cut(s) 211, 656
BstKTI GATC 2 cut(s) 247, 601
BstMBI GATC 2 cut(s) 244, 598
BstMWI GCNNNNNNNGC 2 cut(s) 154, 286
BstV1I GCAGC 1 cut(s) 198
BstX2I RGATCY 2 cut(s) 244, 598
BstYI RGATCY 2 cut(s) 244, 598
Bsu15I ATCGAT 1 cut(s) 578
BsuTUI ATCGAT 1 cut(s) 578
BtgI CCRYGG 1 cut(s) 591
BtsI GCAGTG 1 cut(s) 354
BtsIMutI CAGTG 2 cut(s) 354, 476
BveI ACCTGC 1 cut(s) 169
CciI TCATGA 1 cut(s) 457
CfoI GCGC 2 cut(s) 211, 656
ClaI ATCGAT 1 cut(s) 578
Csp6I GTAC 1 cut(s) 647
CviAII CATG 3 cut(s) 446, 458, 592
CviJI RGCY 8 cut(s) 13, 67, 72, 88, 136, 148, 157, 469
CviKI_1 RGCY 8 cut(s) 13, 67, 72, 88, 136, 148, 157, 469
CviQI GTAC 1 cut(s) 647
DdeI CTNAG 2 cut(s) 68, 659
DpnI GATC 2 cut(s) 246, 600
DpnII GATC 2 cut(s) 244, 598
Eam1104I CTCTTC 2 cut(s) 36, 178
EarI CTCTTC 2 cut(s) 36, 178
EciI GGCGGA 2 cut(s) 25, 46
Eco130I CCWWGG 1 cut(s) 591
Eco47III AGCGCT 1 cut(s) 655
EcoT14I CCWWGG 1 cut(s) 591
ErhI CCWWGG 1 cut(s) 591
FaeI CATG 3 cut(s) 449, 461, 595
FalI AAGNNNNNCTT 2 cut(s) 278, 310
FatI CATG 3 cut(s) 445, 457, 591
Fnu4HI GCNGC 2 cut(s) 11, 212
Fsp4HI GCNGC 2 cut(s) 11, 212
GlaI GCGC 2 cut(s) 210, 655
GluI GCNGC 2 cut(s) 11, 212
HaeII RGCGCY 1 cut(s) 657
HhaI GCGC 2 cut(s) 211, 656
Hin1II CATG 3 cut(s) 449, 461, 595
Hin6I GCGC 2 cut(s) 209, 654
HinP1I GCGC 2 cut(s) 209, 654
HindIII AAGCTT 1 cut(s) 134
HinfI GANTC 2 cut(s) 251, 272
HphI GGTGA 1 cut(s) 346
Hpy188I TCNGA 4 cut(s) 51, 130, 154, 433
Hpy188III TCNNGA 4 cut(s) 239, 248, 329, 458
HpyAV CCTTC 2 cut(s) 405, 617
HpyCH4V TGCA 2 cut(s) 214, 347
HpyF10VI GCNNNNNNNGC 2 cut(s) 154, 286
HpyF3I CTNAG 2 cut(s) 68, 659
Hsp92II CATG 3 cut(s) 449, 461, 595
HspAI GCGC 2 cut(s) 209, 654
Kzo9I GATC 2 cut(s) 244, 598
LguI GCTCTTC 1 cut(s) 178
LmnI GCTCC 4 cut(s) 18, 23, 154, 675
LpnPI CCDG 6 cut(s) 158, 164, 171, 261, 342, 556
Lsp1109I GCAGC 1 cut(s) 198
MaeIII GTNAC 2 cut(s) 418, 441
MalI GATC 2 cut(s) 246, 600
MbiI CCGCTC 1 cut(s) 18
MboI GATC 2 cut(s) 244, 598
MboII GAAGA 4 cut(s) 53, 165, 254, 362
MflI RGATCY 2 cut(s) 244, 598
MluCI AATT 5 cut(s) 187, 308, 426, 521, 628
MroXI GAANNNNTTC 1 cut(s) 45
MseI TTAA 1 cut(s) 267
MslI CAYNNNNRTG 1 cut(s) 678
MwoI GCNNNNNNNGC 2 cut(s) 154, 286
NcoI CCATGG 1 cut(s) 591
NdeII GATC 2 cut(s) 244, 598
NlaIII CATG 3 cut(s) 449, 461, 595
NlaIV GGNNCC 2 cut(s) 14, 156
NmuCI GTSAC 1 cut(s) 441
PagI TCATGA 1 cut(s) 457
PciSI GCTCTTC 1 cut(s) 178
PdmI GAANNNNTTC 1 cut(s) 45
PfeI GAWTC 2 cut(s) 251, 272
PflFI GACNNNGTC 1 cut(s) 569
PkrI GCNGC 2 cut(s) 12, 213
PspN4I GGNNCC 2 cut(s) 14, 156
PsuI RGATCY 2 cut(s) 244, 598
PsyI GACNNNGTC 1 cut(s) 569
RsaI GTAC 1 cut(s) 648
RsaNI GTAC 1 cut(s) 647
RseI CAYNNNNRTG 1 cut(s) 678
SapI GCTCTTC 1 cut(s) 178
SaqAI TTAA 1 cut(s) 267
SatI GCNGC 2 cut(s) 11, 212
Sau3AI GATC 2 cut(s) 244, 598
SetI ASST 9 cut(s) 56, 69, 138, 150, 183, 267, 336, 465, 648
SmiMI CAYNNNNRTG 1 cut(s) 678
Sse9I AATT 5 cut(s) 187, 308, 426, 521, 628
SsiI CCGC 5 cut(s) 10, 16, 36, 57, 109
StyI CCWWGG 1 cut(s) 591
TaqI TCGA 2 cut(s) 254, 578
TasI AATT 5 cut(s) 187, 308, 426, 521, 628
TauI GCSGC 1 cut(s) 13
TfiI GAWTC 2 cut(s) 251, 272
Tru1I TTAA 1 cut(s) 267
Tru9I TTAA 1 cut(s) 267
TscAI CASTG 2 cut(s) 354, 483
TseFI GTSAC 1 cut(s) 441
TseI GCWGC 1 cut(s) 211
Tsp45I GTSAC 1 cut(s) 441
TspDTI ATGAA 2 cut(s) 264, 362
TspGWI ACGGA 1 cut(s) 623
TspRI CASTG 2 cut(s) 354, 483
Tth111I GACNNNGTC 1 cut(s) 569
XapI RAATTY 2 cut(s) 426, 628
XmnI GAANNNNTTC 1 cut(s) 45
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.