Rroxscaffold_2G00106190

Condensin II non structural maintenance of chromosomes subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0006247
Physical Location & Seq
Reverse (-)
29768047 .. 29769916
1870 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00106190.1

Sequence Viewer

Length: 1338 bp
ATGGAGAAGCGGCGCCGCTGCTCTCTCCAATCCTCCGCCGAAGAGTTTCTGACCTCCGCCACCAAGCTCAGCCTCAAATCCTCAAAGCCCTCTCTCAAAACCCTAATCCACAAAATCAAACCCTTCTCCGACCTCTCCTCCTCTCTCCCCATCTCTCTCTCCCACTCCATTTCCGATGCCATCCACTCCTTCCAGACCCTTCTTCTTCAACCTAACCCTTACCCTAGATCCCCTCGCTCTCCCCCCACCAAGCGCCCCCGCAGTCTGATAATTATGGAGTCGGACTCGGCGCTGGTATCGGCGATTGCTAGCTTGTGCGAGCAGTGGTGGAAGGAGGAGTTGCCGGGCCGAGAATCGCTGATCTCTCAGTCGCTTCCTTTCTTGCTCTCGAGATCTCTCACTCTGAACAAGAAGGCAGACGTCCACAGAGTCTACGCCCTCCGCGAGGCTTTCACCTGCTTCGATTTCGAGGACGAGAGCATTGAGGACTTTAAACTGTTGCTAATCCGTTCGCAGCTGTTGAAGGAGGTTTTGGCTGTGATTAAGTCTCAGATTCCGTTTGGAAGGAAGTCGATGCTGGAGGCCTACGGCGACGTTTTGTTCCGAGTTTGGAAAGTGGCAGAGGGGGAGCTGAGGAGTGAGATTGAGAACGGGTTCTTGCAGGTTTTGATTGAGGGTGCTATACACGCCAGCTATGGAGCATTTGCTGCTTCTATTAGAAGGGTTTTGGGAGGGTTTATAAACCAGAGGACCACTGCTGGTGTCGAGAAGCTTCTCTTACAGCTCTCAGAGCCTGTCATATTTCGCTCTTTGCAGGTTGCGAATTCTAATGTTCGTAAAAAAGCGCTGCATTTACTTTTGGACTTGTTCCCTCTTGAAGATCCTGATTCGACTAAAGAGGTTAAAGATTCATTGCTTGATAAGCAGTTCTTTTTATTGGGGAAATTACTTGTAGATGATTGTCCAGAGGTGAGAGTGGTTGCAGTGGAAGGTTCTTGTCGTATTCTTCATCTGTTTTGGGAAGTAATCCCTTCGCCTACCATCACAAAGTTAGTTACTAGAATTTTTGATGATATGTCACATGATACAAGTCATGAGGTCAGGCTTTCCACACTGAATGGCACTATGTATTTGTTTGGCAATCCCCTATGTCATCAATTTCTCAATGTGCTTCTACCCAGAATGGGGCATTTGATGATGGACAATGTCCTATCGATAGGAGTTGCCATGGCAGATCTCCTTCTCATAAAGGATATTCAAAATTTCCATTTCCATAAGGTCTGTCCGCAGAAGTTCTGGACTGTCCATTTTTCAATTGCACAAGTTCAACACCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Condensin2nSMC

Protein Analysis

445

Amino Acids

50.38

Weight (kDa)

8.57

Isoelectric Point (pI)

50.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Condensin2nSMC PF12422 166 - 294 4.4e-44 Condensin II non structural maintenance of chromosomes subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 740
AarI CACCTGC 1 cut(s) 464
AatII GACGTC 1 cut(s) 423
Acc36I ACCTGC 3 cut(s) 464, 652, 805
AccB1I GGYRCC 1 cut(s) 12
AccI GTMKAC 1 cut(s) 432
AccII CGCG 1 cut(s) 444
AciI CCGC 7 cut(s) 10, 16, 36, 57, 259, 442, 1286
AclWI GGATC 2 cut(s) 222, 875
AcsI RAATTY 3 cut(s) 823, 1062, 1261
AcyI GRCGYC 2 cut(s) 13, 420
AfeI AGCGCT 1 cut(s) 846
AfiI CCNNNNNNNGG 3 cut(s) 445, 1184, 1185
AgsI TTSAA 6 cut(s) 209, 523, 878, 1259, 1314, 1328
AjuI GAANNNNNNNTTGG 2 cut(s) 515, 547
AluBI AGCT 7 cut(s) 67, 312, 517, 631, 693, 772, 784
AluI AGCT 7 cut(s) 67, 312, 517, 631, 693, 772, 784
Alw26I GTCTC 1 cut(s) 552
AlwI GGATC 2 cut(s) 222, 875
AlwNI CAGNNNCTG 1 cut(s) 794
Ama87I CYCGRG 1 cut(s) 388
Aor51HI AGCGCT 1 cut(s) 846
AoxI GGCC 2 cut(s) 346, 582
ApeKI GCWGC 4 cut(s) 18, 514, 707, 847
ApoI RAATTY 3 cut(s) 823, 1062, 1261
Asp700I GAANNNNTTC 2 cut(s) 45, 653
AspLEI GCGC 4 cut(s) 15, 255, 292, 847
AspS9I GGNCC 2 cut(s) 346, 750
AsuC2I CCSGG 1 cut(s) 345
AsuHPI GGTGA 2 cut(s) 445, 982
AsuNHI GCTAGC 1 cut(s) 308
AvaI CYCGRG 1 cut(s) 388
AvaII GGWCC 1 cut(s) 750
BanI GGYRCC 1 cut(s) 12
BbvCI CCTCAGC 1 cut(s) 632
BbvI GCAGC 4 cut(s) 5, 526, 694, 834
BccI CCATC 4 cut(s) 158, 188, 1049, 1192
BceAI ACGGC 1 cut(s) 604
BcnI CCSGG 1 cut(s) 345
BcoDI GTCTC 1 cut(s) 552
BfaI CTAG 3 cut(s) 225, 309, 1059
BfoI RGCGCY 4 cut(s) 16, 256, 293, 848
BfuAI ACCTGC 3 cut(s) 464, 652, 805
BglII AGATCT 2 cut(s) 392, 1234
BisI GCNGC 6 cut(s) 11, 16, 19, 515, 708, 848
BlpI GCTNAGC 1 cut(s) 68
BlsI GCNGC 6 cut(s) 12, 17, 20, 516, 709, 849
Bme1390I CCNGG 1 cut(s) 345
Bme18I GGWCC 1 cut(s) 750
BmeT110I CYCGRG 1 cut(s) 388
BmgT120I GGNCC 2 cut(s) 346, 750
BmiI GGNNCC 1 cut(s) 14
BmrFI CCNGG 1 cut(s) 345
BmsI GCATC 2 cut(s) 166, 564
BmtI GCTAGC 1 cut(s) 312
BplI GAGNNNNNCTC 2 cut(s) 269, 301
BpmI CTGGAG 1 cut(s) 599
Bpu10I CCTNAGC 1 cut(s) 632
Bpu1102I GCTNAGC 1 cut(s) 68
BpuMI CCSGG 1 cut(s) 345
Bsa29I ATCGAT 1 cut(s) 1214
BsaHI GRCGYC 2 cut(s) 13, 420
BsaJI CCNNGG 1 cut(s) 1227
BsaXI ACNNNNNCTCC 2 cut(s) 122, 152
Bsc4I CCNNNNNNNGG 3 cut(s) 445, 1184, 1185
Bse3DI GCAATG 1 cut(s) 911
BseCI ATCGAT 1 cut(s) 1214
BseDI CCNNGG 1 cut(s) 1227
BseGI GGATG 1 cut(s) 180
BseLI CCNNNNNNNGG 3 cut(s) 445, 1184, 1185
BseMI GCAATG 1 cut(s) 911
BseMII CTCAG 5 cut(s) 82, 380, 563, 623, 801
BseRI GAGGAG 4 cut(s) 127, 130, 350, 649
BseXI GCAGC 4 cut(s) 5, 526, 694, 834
Bsh1236I CGCG 1 cut(s) 444
BshFI GGCC 2 cut(s) 348, 584
BshNI GGYRCC 1 cut(s) 12
BshVI ATCGAT 1 cut(s) 1214
BsiHKCI CYCGRG 1 cut(s) 388
BsiSI CCGG 1 cut(s) 344
BslI CCNNNNNNNGG 3 cut(s) 445, 1184, 1185
BsmAI GTCTC 1 cut(s) 552
BsnI GGCC 2 cut(s) 348, 584
BsoBI CYCGRG 1 cut(s) 388
Bsp143I GATC 5 cut(s) 227, 360, 392, 880, 1234
Bsp1720I GCTNAGC 1 cut(s) 68
Bsp19I CCATGG 1 cut(s) 1227
BspACI CCGC 7 cut(s) 10, 16, 36, 57, 259, 442, 1286
BspANI GGCC 2 cut(s) 348, 584
BspCNI CTCAG 5 cut(s) 81, 379, 562, 624, 800
BspDI ATCGAT 1 cut(s) 1214
BspFNI CGCG 1 cut(s) 444
BspHI TCATGA 1 cut(s) 1093
BspLI GGNNCC 1 cut(s) 14
BspMI ACCTGC 3 cut(s) 464, 652, 805
BspOI GCTAGC 1 cut(s) 312
BspPI GGATC 2 cut(s) 222, 875
BspT107I GGYRCC 1 cut(s) 12
BsrDI GCAATG 1 cut(s) 911
BssECI CCNNGG 1 cut(s) 1227
BssMI GATC 5 cut(s) 227, 360, 392, 880, 1234
BssNI GRCGYC 2 cut(s) 13, 420
BssT1I CCWWGG 1 cut(s) 1227
Bst4CI ACNGT 2 cut(s) 498, 1303
Bst6I CTCTTC 1 cut(s) 36
BstACI GRCGYC 2 cut(s) 13, 420
BstAPI GCANNNNNTGC 1 cut(s) 707
BstC8I GCNNGC 3 cut(s) 310, 320, 691
BstDEI CTNAG 5 cut(s) 68, 366, 549, 632, 787
BstDSI CCRYGG 1 cut(s) 1227
BstENI CCTNNNNNAGG 1 cut(s) 443
BstF5I GGATG 1 cut(s) 180
BstFNI CGCG 1 cut(s) 444
BstH2I RGCGCY 4 cut(s) 16, 256, 293, 848
BstHHI GCGC 4 cut(s) 15, 255, 292, 847
BstKTI GATC 5 cut(s) 230, 363, 395, 883, 1237
BstMAI GTCTC 1 cut(s) 552
BstMBI GATC 5 cut(s) 227, 360, 392, 880, 1234
BstMWI GCNNNNNNNGC 4 cut(s) 686, 707, 790, 922
BstSCI CCNGG 1 cut(s) 343
BstUI CGCG 1 cut(s) 444
BstV1I GCAGC 4 cut(s) 5, 526, 694, 834
BstX2I RGATCY 4 cut(s) 227, 392, 880, 1234
BstYI RGATCY 4 cut(s) 227, 392, 880, 1234
Bsu15I ATCGAT 1 cut(s) 1214
BsuRI GGCC 2 cut(s) 348, 584
BsuTUI ATCGAT 1 cut(s) 1214
BtgI CCRYGG 1 cut(s) 1227
BtsCI GGATG 1 cut(s) 180
BtsI GCAGTG 3 cut(s) 329, 753, 990
BtsIMutI CAGTG 4 cut(s) 329, 753, 990, 1112
BveI ACCTGC 3 cut(s) 464, 652, 805
Cac8I GCNNGC 3 cut(s) 310, 320, 691
CaiI CAGNNNCTG 1 cut(s) 794
CciI TCATGA 1 cut(s) 1093
CfoI GCGC 4 cut(s) 15, 255, 292, 847
Cfr13I GGNCC 2 cut(s) 346, 750
ClaI ATCGAT 1 cut(s) 1214
CviAII CATG 3 cut(s) 1082, 1094, 1228
DdeI CTNAG 5 cut(s) 68, 366, 549, 632, 787
DinI GGCGCC 1 cut(s) 14
DpnI GATC 5 cut(s) 229, 362, 394, 882, 1236
DpnII GATC 5 cut(s) 227, 360, 392, 880, 1234
DraI TTTAAA 1 cut(s) 493
Eam1104I CTCTTC 1 cut(s) 36
EarI CTCTTC 1 cut(s) 36
EciI GGCGGA 2 cut(s) 25, 46
Eco130I CCWWGG 1 cut(s) 1227
Eco147I AGGCCT 1 cut(s) 584
Eco47I GGWCC 1 cut(s) 750
Eco47III AGCGCT 1 cut(s) 846
Eco88I CYCGRG 1 cut(s) 388
EcoNI CCTNNNNNAGG 1 cut(s) 443
EcoRI GAATTC 1 cut(s) 823
EcoT14I CCWWGG 1 cut(s) 1227
EgeI GGCGCC 1 cut(s) 14
EheI GGCGCC 1 cut(s) 14
ErhI CCWWGG 1 cut(s) 1227
FaeI CATG 3 cut(s) 1085, 1097, 1231
FalI AAGNNNNNCTT 4 cut(s) 761, 793, 914, 946
FatI CATG 3 cut(s) 1081, 1093, 1227
FauI CCCGC 1 cut(s) 266
FblI GTMKAC 1 cut(s) 432
Fnu4HI GCNGC 6 cut(s) 11, 16, 19, 515, 708, 848
FokI GGATG 1 cut(s) 167
Fsp4HI GCNGC 6 cut(s) 11, 16, 19, 515, 708, 848
FspBI CTAG 3 cut(s) 225, 309, 1059
GlaI GCGC 4 cut(s) 14, 254, 291, 846
GluI GCNGC 6 cut(s) 11, 16, 19, 515, 708, 848
GsuI CTGGAG 1 cut(s) 599
HaeII RGCGCY 4 cut(s) 16, 256, 293, 848
HaeIII GGCC 2 cut(s) 348, 584
HapII CCGG 1 cut(s) 344
HhaI GCGC 4 cut(s) 15, 255, 292, 847
Hin1I GRCGYC 2 cut(s) 13, 420
Hin1II CATG 3 cut(s) 1085, 1097, 1231
Hin6I GCGC 4 cut(s) 13, 253, 290, 845
HinP1I GCGC 4 cut(s) 13, 253, 290, 845
HindIII AAGCTT 1 cut(s) 770
HinfI GANTC 7 cut(s) 278, 284, 353, 429, 553, 887, 908
HpaII CCGG 1 cut(s) 344
HphI GGTGA 2 cut(s) 445, 982
Hpy166II GTNNAC 2 cut(s) 424, 433
Hpy188I TCNGA 9 cut(s) 51, 130, 175, 267, 283, 405, 552, 605, 790
Hpy188III TCNNGA 9 cut(s) 193, 388, 390, 766, 875, 884, 965, 1094, 1297
Hpy8I GTNNAC 2 cut(s) 424, 433
Hpy99I CGWCG 1 cut(s) 596
HpyCH4III ACNGT 2 cut(s) 498, 1303
HpyCH4IV ACGT 2 cut(s) 420, 594
HpyCH4V TGCA 5 cut(s) 661, 814, 850, 983, 1319
HpyF10VI GCNNNNNNNGC 4 cut(s) 686, 707, 790, 922
HpyF3I CTNAG 5 cut(s) 68, 366, 549, 632, 787
HpySE526I ACGT 2 cut(s) 420, 594
Hsp92I GRCGYC 2 cut(s) 13, 420
Hsp92II CATG 3 cut(s) 1085, 1097, 1231
HspAI GCGC 4 cut(s) 13, 253, 290, 845
KasI GGCGCC 1 cut(s) 12
Kzo9I GATC 5 cut(s) 227, 360, 392, 880, 1234
LmnI GCTCC 2 cut(s) 628, 698
Lsp1109I GCAGC 4 cut(s) 5, 526, 694, 834
LweI GCATC 2 cut(s) 166, 564
MaeI CTAG 3 cut(s) 225, 309, 1059
MaeII ACGT 2 cut(s) 420, 594
MaeIII GTNAC 2 cut(s) 1054, 1077
MalI GATC 5 cut(s) 229, 362, 394, 882, 1236
MboI GATC 5 cut(s) 227, 360, 392, 880, 1234
MboII GAAGA 5 cut(s) 53, 194, 197, 890, 998
MfeI CAATTG 1 cut(s) 1314
MflI RGATCY 4 cut(s) 227, 392, 880, 1234
MluCI AATT 7 cut(s) 270, 823, 944, 1062, 1157, 1261, 1314
Mly113I GGCGCC 1 cut(s) 13
MlyI GAGTC 3 cut(s) 278, 287, 438
MmeI TCCRAC 2 cut(s) 153, 261
MroXI GAANNNNTTC 2 cut(s) 45, 653
MseI TTAA 3 cut(s) 492, 543, 903
MspA1I CMGCKG 2 cut(s) 18, 517
MspI CCGG 1 cut(s) 344
MspR9I CCNGG 1 cut(s) 345
MunI CAATTG 1 cut(s) 1314
MvnI CGCG 1 cut(s) 444
MwoI GCNNNNNNNGC 4 cut(s) 686, 707, 790, 922
NarI GGCGCC 1 cut(s) 13
NciI CCSGG 1 cut(s) 345
NcoI CCATGG 1 cut(s) 1227
NdeII GATC 5 cut(s) 227, 360, 392, 880, 1234
NheI GCTAGC 1 cut(s) 308
NlaIII CATG 3 cut(s) 1085, 1097, 1231
NlaIV GGNNCC 1 cut(s) 14
NmeAIII GCCGAG 2 cut(s) 266, 374
NmuCI GTSAC 1 cut(s) 1077
PaeR7I CTCGAG 1 cut(s) 388
PagI TCATGA 1 cut(s) 1093
PaqCI CACCTGC 1 cut(s) 464
PceI AGGCCT 1 cut(s) 584
PcsI WCGNNNNNNNCGW 1 cut(s) 441
PdmI GAANNNNTTC 2 cut(s) 45, 653
PfeI GAWTC 4 cut(s) 353, 553, 887, 908
PflFI GACNNNGTC 1 cut(s) 1205
PkrI GCNGC 6 cut(s) 12, 17, 20, 516, 709, 849
PleI GAGTC 3 cut(s) 278, 286, 437
PluTI GGCGCC 1 cut(s) 16
PpsI GAGTC 3 cut(s) 278, 286, 437
PsiI TTATAA 1 cut(s) 740
PspN4I GGNNCC 1 cut(s) 14
PspPI GGNCC 2 cut(s) 346, 750
PstNI CAGNNNCTG 1 cut(s) 794
PsuI RGATCY 4 cut(s) 227, 392, 880, 1234
PsyI GACNNNGTC 1 cut(s) 1205
PvuII CAGCTG 1 cut(s) 517
SaqAI TTAA 3 cut(s) 492, 543, 903
SatI GCNGC 6 cut(s) 11, 16, 19, 515, 708, 848
Sau3AI GATC 5 cut(s) 227, 360, 392, 880, 1234
Sau96I GGNCC 2 cut(s) 346, 750
SchI GAGTC 3 cut(s) 278, 287, 438
ScrFI CCNGG 1 cut(s) 345
SfaNI GCATC 2 cut(s) 166, 564
SfoI GGCGCC 1 cut(s) 14
Sfr274I CTCGAG 1 cut(s) 388
SinI GGWCC 1 cut(s) 750
SlaI CTCGAG 1 cut(s) 388
SmlI CTYRAG 1 cut(s) 388
SmoI CTYRAG 1 cut(s) 388
Sse9I AATT 7 cut(s) 270, 823, 944, 1062, 1157, 1261, 1314
SseBI AGGCCT 1 cut(s) 584
SsiI CCGC 7 cut(s) 10, 16, 36, 57, 259, 442, 1286
SspDI GGCGCC 1 cut(s) 12
SspMI CTAG 3 cut(s) 225, 309, 1059
StuI AGGCCT 1 cut(s) 584
StyD4I CCNGG 1 cut(s) 343
StyI CCWWGG 1 cut(s) 1227
TaaI ACNGT 2 cut(s) 498, 1303
TaiI ACGT 2 cut(s) 423, 597
TaqI TCGA 7 cut(s) 389, 462, 468, 572, 765, 890, 1214
TasI AATT 7 cut(s) 270, 823, 944, 1062, 1157, 1261, 1314
TauI GCSGC 2 cut(s) 13, 18
TfiI GAWTC 4 cut(s) 353, 553, 887, 908
Tru1I TTAA 3 cut(s) 492, 543, 903
Tru9I TTAA 3 cut(s) 492, 543, 903
TscAI CASTG 4 cut(s) 329, 760, 990, 1119
TseFI GTSAC 1 cut(s) 1077
TseI GCWGC 4 cut(s) 18, 514, 707, 847
Tsp45I GTSAC 1 cut(s) 1077
TspDTI ATGAA 2 cut(s) 900, 998
TspGWI ACGGA 2 cut(s) 497, 546
TspRI CASTG 4 cut(s) 329, 760, 990, 1119
Tth111I GACNNNGTC 1 cut(s) 1205
VpaK11BI GGWCC 1 cut(s) 750
XagI CCTNNNNNAGG 1 cut(s) 443
XapI RAATTY 3 cut(s) 823, 1062, 1261
XhoI CTCGAG 1 cut(s) 388
XmiI GTMKAC 1 cut(s) 432
XmnI GAANNNNTTC 2 cut(s) 45, 653
XspI CTAG 3 cut(s) 225, 309, 1059
ZraI GACGTC 1 cut(s) 421
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.