Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011080.1

Orthogroup ID

OG0008608

Physical Location & Seq

Genomic Coordinates Reverse (-)

40610 .. 43181

Gene Structure 2572 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011080.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

atgattagtggagtaattgcggaggcgtaccggaacttccttgcgccagaaaaggccaagaccacggcaatcatcactacaaggggagcatatgacgccatcgaaccccaagaaagagaagaggagagatcccaggattgtagtcgacctgtggagcaagtgaatatgaagtttctagattggtatttgaagatcgcattcgggtcggctctcattggagcttccatggagtttttcatgatcaaaaccggcttctatgataaagtaacagttctggagtctgaaaaacgtgcttgggagaattcgccagaggctcaggcagtcagagaagctctcaatccttggagaaatcgtgatgtggaagcaaagaaagaatcctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

126

Amino Acids

14.44

Weight (kDa)

5.16

Isoelectric Point (pI)

48.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008608)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62450
fragaria_vesca	FvH4_4g16990
malus_domestica	MD16G1176900.v1.1
prunus_persica	Prupe.1G143700_v2.0.a1 Prupe.1G143700_v2.0.a1
pyrus_communis	pycom16g14840
rosa_chinensis	RchiOBHm_Chr1g0363231 RchiOBHm_Chr4g0420661
rosa_multiflora	Rmu_sc0011080.1_g000011
rosa_roxburghii	Rroxscaffold_4G00293290 Rroxscaffold_5G00363200 Rroxscaffold_6G00393620
rosa_rugosa	Rorug01G0335000 Rorug03G0345100 Rorug05G0255300 Rorug05G0255400 Rorug05G0255500
rosa_samantha	Rh4AG226800 Rh4BG229400 Rh4CG241800 Rh4DG225100
rosa_wichuraiana	Rw1G027870 Rw4G019630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	145
AciI	CCGC	1 cut(s)	20
AclWI	GGATC	1 cut(s)	123
AcsI	RAATTY	1 cut(s)	301
AcyI	GRCGYC	1 cut(s)	96
AfaI	GTAC	1 cut(s)	29
AgsI	TTSAA	1 cut(s)	190
AjnI	CCWGG	1 cut(s)	132
AluBI	AGCT	2 cut(s)	221, 332
AluI	AGCT	2 cut(s)	221, 332
AlwI	GGATC	1 cut(s)	123
AoxI	GGCC	1 cut(s)	54
ApoI	RAATTY	1 cut(s)	301
AspLEI	GCGC	1 cut(s)	46
BarI	GAAGNNNNNNTAC	2 cut(s)	20, 52
BccI	CCATC	1 cut(s)	107
BceAI	ACGGC	1 cut(s)	81
BcgI	CGANNNNNNTGC	2 cut(s)	186, 220
BciT130I	CCWGG	1 cut(s)	134
BclI	TGATCA	1 cut(s)	240
BfaI	CTAG	1 cut(s)	176
Bme1390I	CCNGG	1 cut(s)	134
BmrFI	CCNGG	1 cut(s)	134
BplI	GAGNNNNNCTC	2 cut(s)	318, 350
BpmI	CTGGAG	1 cut(s)	296
Bpu10I	CCTNAGC	1 cut(s)	315
BsaHI	GRCGYC	1 cut(s)	96
BsaJI	CCNNGG	4 cut(s)	63, 132, 225, 341
BsaWI	WCCGGW	1 cut(s)	30
BsaXI	ACNNNNNCTCC	2 cut(s)	337, 367
Bse118I	RCCGGY	1 cut(s)	248
BseBI	CCWGG	1 cut(s)	134
BseDI	CCNNGG	4 cut(s)	63, 132, 225, 341
BseMII	CTCAG	1 cut(s)	329
BseRI	GAGGAG	1 cut(s)	137
BshFI	GGCC	1 cut(s)	56
BsiSI	CCGG	2 cut(s)	31, 249
BsmI	GAATGC	1 cut(s)	197
BsnI	GGCC	1 cut(s)	56
Bsp143I	GATC	3 cut(s)	128, 192, 240
Bsp19I	CCATGG	1 cut(s)	225
BspACI	CCGC	1 cut(s)	20
BspANI	GGCC	1 cut(s)	56
BspCNI	CTCAG	1 cut(s)	328
BspHI	TCATGA	1 cut(s)	237
BspPI	GGATC	1 cut(s)	123
BsrFI	RCCGGY	1 cut(s)	248
BssAI	RCCGGY	1 cut(s)	248
BssECI	CCNNGG	4 cut(s)	63, 132, 225, 341
BssMI	GATC	3 cut(s)	128, 192, 240
BssNI	GRCGYC	1 cut(s)	96
BssT1I	CCWWGG	2 cut(s)	225, 341
Bst2UI	CCWGG	1 cut(s)	134
Bst4CI	ACNGT	1 cut(s)	271
Bst6I	CTCTTC	1 cut(s)	114
BstACI	GRCGYC	1 cut(s)	96
BstDEI	CTNAG	1 cut(s)	315
BstDSI	CCRYGG	2 cut(s)	63, 225
BstHHI	GCGC	1 cut(s)	46
BstKTI	GATC	3 cut(s)	131, 195, 243
BstMBI	GATC	3 cut(s)	128, 192, 240
BstMWI	GCNNNNNNNGC	1 cut(s)	95
BstNI	CCWGG	1 cut(s)	134
BstSCI	CCNGG	1 cut(s)	132
BstX2I	RGATCY	1 cut(s)	128
BstYI	RGATCY	1 cut(s)	128
BsuRI	GGCC	1 cut(s)	56
BtgI	CCRYGG	2 cut(s)	63, 225
CciI	TCATGA	1 cut(s)	237
CfoI	GCGC	1 cut(s)	46
Cfr10I	RCCGGY	1 cut(s)	248
CseI	GACGC	1 cut(s)	104
Csp6I	GTAC	1 cut(s)	28
CviAII	CATG	2 cut(s)	226, 238
CviJI	RGCY	6 cut(s)	56, 209, 221, 252, 314, 332
CviKI_1	RGCY	6 cut(s)	56, 209, 221, 252, 314, 332
CviQI	GTAC	1 cut(s)	28
DdeI	CTNAG	1 cut(s)	315
DpnI	GATC	3 cut(s)	130, 194, 242
DpnII	GATC	3 cut(s)	128, 192, 240
Eam1104I	CTCTTC	1 cut(s)	114
EarI	CTCTTC	1 cut(s)	114
Eco130I	CCWWGG	2 cut(s)	225, 341
EcoRI	GAATTC	1 cut(s)	301
EcoRII	CCWGG	1 cut(s)	132
EcoT14I	CCWWGG	2 cut(s)	225, 341
ErhI	CCWWGG	2 cut(s)	225, 341
FaeI	CATG	2 cut(s)	229, 241
FaiI	YATR	6 cut(s)	91, 93, 167, 227, 239, 258
FatI	CATG	2 cut(s)	225, 237
FauNDI	CATATG	1 cut(s)	91
FbaI	TGATCA	1 cut(s)	240
FblI	GTMKAC	1 cut(s)	145
FspBI	CTAG	1 cut(s)	176
GlaI	GCGC	1 cut(s)	45
GsuI	CTGGAG	1 cut(s)	296
HaeIII	GGCC	1 cut(s)	56
HapII	CCGG	2 cut(s)	31, 249
HgaI	GACGC	1 cut(s)	104
HhaI	GCGC	1 cut(s)	46
Hin1I	GRCGYC	1 cut(s)	96
Hin1II	CATG	2 cut(s)	229, 241
Hin6I	GCGC	1 cut(s)	44
HinP1I	GCGC	1 cut(s)	44
HincII	GTYRAC	1 cut(s)	146
HindII	GTYRAC	1 cut(s)	146
HinfI	GANTC	2 cut(s)	278, 374
HpaII	CCGG	2 cut(s)	31, 249
Hpy166II	GTNNAC	1 cut(s)	146
Hpy188I	TCNGA	2 cut(s)	283, 326
Hpy188III	TCNNGA	4 cut(s)	176, 238, 275, 353
Hpy8I	GTNNAC	1 cut(s)	146
HpyCH4III	ACNGT	1 cut(s)	271
HpyCH4IV	ACGT	1 cut(s)	289
HpyF10VI	GCNNNNNNNGC	1 cut(s)	95
HpyF3I	CTNAG	1 cut(s)	315
HpySE526I	ACGT	1 cut(s)	289
Hsp92I	GRCGYC	1 cut(s)	96
Hsp92II	CATG	2 cut(s)	229, 241
HspAI	GCGC	1 cut(s)	44
Ksp22I	TGATCA	1 cut(s)	240
Kzo9I	GATC	3 cut(s)	128, 192, 240
LmnI	GCTCC	3 cut(s)	86, 154, 218
LpnPI	CCDG	9 cut(s)	44, 60, 119, 146, 162, 260, 262, 302, 321
MaeI	CTAG	1 cut(s)	176
MaeII	ACGT	1 cut(s)	289
MaeIII	GTNAC	1 cut(s)	265
MalI	GATC	3 cut(s)	130, 194, 242
MboI	GATC	3 cut(s)	128, 192, 240
MboII	GAAGA	2 cut(s)	131, 202
MflI	RGATCY	1 cut(s)	128
MluCI	AATT	2 cut(s)	15, 301
MlyI	GAGTC	1 cut(s)	287
MnlI	CCTC	3 cut(s)	16, 115, 304
MspI	CCGG	2 cut(s)	31, 249
MspR9I	CCNGG	1 cut(s)	134
Mva1269I	GAATGC	1 cut(s)	197
MvaI	CCWGG	1 cut(s)	134
MwoI	GCNNNNNNNGC	1 cut(s)	95
NcoI	CCATGG	1 cut(s)	225
NdeI	CATATG	1 cut(s)	91
NdeII	GATC	3 cut(s)	128, 192, 240
NlaIII	CATG	2 cut(s)	229, 241
PagI	TCATGA	1 cut(s)	237
PctI	GAATGC	1 cut(s)	197
PfeI	GAWTC	1 cut(s)	374
PleI	GAGTC	1 cut(s)	286
PpsI	GAGTC	1 cut(s)	286
Psp6I	CCWGG	1 cut(s)	132
PspGI	CCWGG	1 cut(s)	132
PsuI	RGATCY	1 cut(s)	128
RsaI	GTAC	1 cut(s)	29
RsaNI	GTAC	1 cut(s)	28
SalI	GTCGAC	1 cut(s)	144
Sau3AI	GATC	3 cut(s)	128, 192, 240
SchI	GAGTC	1 cut(s)	287
ScrFI	CCNGG	1 cut(s)	134
SetI	ASST	4 cut(s)	151, 223, 292, 334
Sse9I	AATT	2 cut(s)	15, 301
SsiI	CCGC	1 cut(s)	20
SspMI	CTAG	1 cut(s)	176
StyD4I	CCNGG	1 cut(s)	132
StyI	CCWWGG	2 cut(s)	225, 341
TaaI	ACNGT	1 cut(s)	271
TaiI	ACGT	1 cut(s)	292
TaqI	TCGA	2 cut(s)	102, 145
TasI	AATT	2 cut(s)	15, 301
TfiI	GAWTC	1 cut(s)	374
TspDTI	ATGAA	2 cut(s)	182, 226
XapI	RAATTY	1 cut(s)	301
XbaI	TCTAGA	1 cut(s)	175
XmiI	GTMKAC	1 cut(s)	145
XspI	CTAG	1 cut(s)	176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.