Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0008608

Physical Location & Seq

Genomic Coordinates Reverse (-)

48839081 .. 48856801

Gene Structure 17721 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG241800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGCCGCTGATCGATTGCGAAGAGCGAGATAGGGTCTGGACAGAGAAACTCAATTTGGATGAGAATCCAAAATCGAGATTTGGATCAGATTATTCATCTGGAATTGATGGAGATCTGCACACCATGAGGCTCAGTCAGATCTTCACCTTGAGGCTCGGTCTCATGCATTGCATGGCCATCCAACCGATTTTCGAAGTGTTGTTCATCACGTACTATTGGCTTCTTCCATGTTGGGGTATCCAAGATCTTCTGGTATCTGACCGCCCATATATTCTGTTCAGAAACATATTTCAGTTCTATGCAAGCAGTACATATGATAAAGTAACAGTTCTGGAGTCTGAAAAACGTGCTTGGGAGAATTCGCCAGAGGCTCAGGCAGTCAGAGAAGCTCTCAATCCTTGGAGAAATCGTGATGTGGAAGCAAAGAAAGAATCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

145

Amino Acids

17.13

Weight (kDa)

5.07

Isoelectric Point (pI)

51.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0008608)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62450
fragaria_vesca	FvH4_4g16990
malus_domestica	MD16G1176900.v1.1
prunus_persica	Prupe.1G143700_v2.0.a1 Prupe.1G143700_v2.0.a1
pyrus_communis	pycom16g14840
rosa_chinensis	RchiOBHm_Chr1g0363231 RchiOBHm_Chr4g0420661
rosa_multiflora	Rmu_sc0011080.1_g000011
rosa_roxburghii	Rroxscaffold_4G00293290 Rroxscaffold_5G00363200 Rroxscaffold_6G00393620
rosa_rugosa	Rorug01G0335000 Rorug03G0345100 Rorug05G0255300 Rorug05G0255400 Rorug05G0255500
rosa_samantha	Rh4AG226800 Rh4BG229400 Rh4CG241800 Rh4DG225100
rosa_wichuraiana	Rw1G027870 Rw4G019630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	5, 262
AclWI	GGATC	1 cut(s)	91
AcoI	YGGCCR	1 cut(s)	174
AcsI	RAATTY	1 cut(s)	358
AfaI	GTAC	2 cut(s)	212, 310
AfiI	CCNNNNNNNGG	1 cut(s)	233
AjuI	GAANNNNNNNTTGG	2 cut(s)	38, 70
AluBI	AGCT	1 cut(s)	389
AluI	AGCT	1 cut(s)	389
Alw26I	GTCTC	1 cut(s)	164
AlwI	GGATC	1 cut(s)	91
AoxI	GGCC	1 cut(s)	174
ApoI	RAATTY	1 cut(s)	358
AsuHPI	GGTGA	1 cut(s)	136
AsuII	TTCGAA	1 cut(s)	192
BalI	TGGCCA	1 cut(s)	176
BccI	CCATC	2 cut(s)	101, 185
BciVI	GTATCC	1 cut(s)	248
BcoDI	GTCTC	1 cut(s)	164
BfuI	GTATCC	1 cut(s)	248
BglII	AGATCT	3 cut(s)	112, 138, 244
BisI	GCNGC	1 cut(s)	5
BlsI	GCNGC	1 cut(s)	6
BplI	GAGNNNNNCTC	2 cut(s)	375, 407
BpmI	CTGGAG	1 cut(s)	353
Bpu10I	CCTNAGC	1 cut(s)	372
Bpu14I	TTCGAA	1 cut(s)	192
BpuEI	CTTGAG	1 cut(s)	169
Bsa29I	ATCGAT	1 cut(s)	12
BsaAI	YACGTR	1 cut(s)	210
BsaBI	GATNNNNATC	3 cut(s)	63, 82, 111
BsaI	GGTCTC	1 cut(s)	164
BsaJI	CCNNGG	1 cut(s)	398
BsaXI	ACNNNNNCTCC	2 cut(s)	394, 424
Bsc4I	CCNNNNNNNGG	1 cut(s)	233
Bse3DI	GCAATG	1 cut(s)	166
Bse8I	GATNNNNATC	3 cut(s)	63, 82, 111
BseCI	ATCGAT	1 cut(s)	12
BseDI	CCNNGG	1 cut(s)	398
BseGI	GGATG	2 cut(s)	64, 177
BseJI	GATNNNNATC	3 cut(s)	63, 82, 111
BseLI	CCNNNNNNNGG	1 cut(s)	233
BseMI	GCAATG	1 cut(s)	166
BseMII	CTCAG	2 cut(s)	145, 386
BsgI	GTGCAG	1 cut(s)	101
BshFI	GGCC	1 cut(s)	176
BshVI	ATCGAT	1 cut(s)	12
BslI	CCNNNNNNNGG	1 cut(s)	233
BsmAI	GTCTC	1 cut(s)	164
BsnI	GGCC	1 cut(s)	176
Bso31I	GGTCTC	1 cut(s)	164
Bsp119I	TTCGAA	1 cut(s)	192
Bsp143I	GATC	5 cut(s)	9, 83, 112, 138, 244
BspACI	CCGC	2 cut(s)	5, 262
BspANI	GGCC	1 cut(s)	176
BspCNI	CTCAG	2 cut(s)	144, 385
BspDI	ATCGAT	1 cut(s)	12
BspPI	GGATC	1 cut(s)	91
BspQI	GCTCTTC	1 cut(s)	15
BspT104I	TTCGAA	1 cut(s)	192
BspTNI	GGTCTC	1 cut(s)	164
BsrDI	GCAATG	1 cut(s)	166
BssECI	CCNNGG	1 cut(s)	398
BssMI	GATC	5 cut(s)	9, 83, 112, 138, 244
BssT1I	CCWWGG	1 cut(s)	398
Bst4CI	ACNGT	1 cut(s)	328
Bst6I	CTCTTC	1 cut(s)	15
BstBAI	YACGTR	1 cut(s)	210
BstBI	TTCGAA	1 cut(s)	192
BstC8I	GCNNGC	1 cut(s)	304
BstDEI	CTNAG	2 cut(s)	131, 372
BstF5I	GGATG	2 cut(s)	64, 177
BstKTI	GATC	5 cut(s)	12, 86, 115, 141, 247
BstMAI	GTCTC	1 cut(s)	164
BstMBI	GATC	5 cut(s)	9, 83, 112, 138, 244
BstX2I	RGATCY	3 cut(s)	112, 138, 244
BstYI	RGATCY	3 cut(s)	112, 138, 244
Bsu15I	ATCGAT	1 cut(s)	12
BsuI	GTATCC	1 cut(s)	248
BsuRI	GGCC	1 cut(s)	176
BsuTUI	ATCGAT	1 cut(s)	12
BtsCI	GGATG	2 cut(s)	64, 177
Cac8I	GCNNGC	1 cut(s)	304
ClaI	ATCGAT	1 cut(s)	12
Csp6I	GTAC	2 cut(s)	211, 309
CviAII	CATG	4 cut(s)	124, 163, 172, 228
CviJI	RGCY	6 cut(s)	130, 154, 176, 220, 371, 389
CviKI_1	RGCY	6 cut(s)	130, 154, 176, 220, 371, 389
CviQI	GTAC	2 cut(s)	211, 309
DdeI	CTNAG	2 cut(s)	131, 372
DpnI	GATC	5 cut(s)	11, 85, 114, 140, 246
DpnII	GATC	5 cut(s)	9, 83, 112, 138, 244
EaeI	YGGCCR	1 cut(s)	174
Eam1104I	CTCTTC	1 cut(s)	15
EarI	CTCTTC	1 cut(s)	15
Eco130I	CCWWGG	1 cut(s)	398
Eco31I	GGTCTC	1 cut(s)	164
EcoRI	GAATTC	1 cut(s)	358
EcoT14I	CCWWGG	1 cut(s)	398
EcoT22I	ATGCAT	1 cut(s)	168
ErhI	CCWWGG	1 cut(s)	398
FaeI	CATG	4 cut(s)	127, 166, 175, 231
FatI	CATG	4 cut(s)	123, 162, 171, 227
FauNDI	CATATG	1 cut(s)	313
Fnu4HI	GCNGC	1 cut(s)	5
FokI	GGATG	2 cut(s)	71, 164
Fsp4HI	GCNGC	1 cut(s)	5
GluI	GCNGC	1 cut(s)	5
GsuI	CTGGAG	1 cut(s)	353
HaeIII	GGCC	1 cut(s)	176
Hin1II	CATG	4 cut(s)	127, 166, 175, 231
HinfI	GANTC	3 cut(s)	64, 335, 431
HphI	GGTGA	1 cut(s)	136
Hpy188I	TCNGA	6 cut(s)	88, 138, 259, 281, 340, 383
Hpy188III	TCNNGA	5 cut(s)	37, 75, 99, 332, 410
HpyCH4III	ACNGT	1 cut(s)	328
HpyCH4IV	ACGT	2 cut(s)	209, 346
HpyCH4V	TGCA	4 cut(s)	118, 166, 171, 302
HpyF3I	CTNAG	2 cut(s)	131, 372
HpySE526I	ACGT	2 cut(s)	209, 346
Hsp92II	CATG	4 cut(s)	127, 166, 175, 231
Kzo9I	GATC	5 cut(s)	9, 83, 112, 138, 244
LguI	GCTCTTC	1 cut(s)	15
LpnPI	CCDG	6 cut(s)	22, 84, 236, 317, 359, 378
MaeII	ACGT	2 cut(s)	209, 346
MaeIII	GTNAC	1 cut(s)	322
MalI	GATC	5 cut(s)	11, 85, 114, 140, 246
MboI	GATC	5 cut(s)	9, 83, 112, 138, 244
MboII	GAAGA	4 cut(s)	32, 133, 215, 239
MflI	RGATCY	3 cut(s)	112, 138, 244
MlsI	TGGCCA	1 cut(s)	176
MluCI	AATT	3 cut(s)	52, 102, 358
MluNI	TGGCCA	1 cut(s)	176
MlyI	GAGTC	1 cut(s)	344
MmeI	TCCRAC	1 cut(s)	205
MnlI	CCTC	3 cut(s)	120, 144, 361
Mox20I	TGGCCA	1 cut(s)	176
Mph1103I	ATGCAT	1 cut(s)	168
MscI	TGGCCA	1 cut(s)	176
Msp20I	TGGCCA	1 cut(s)	176
MspA1I	CMGCKG	1 cut(s)	7
NdeI	CATATG	1 cut(s)	313
NdeII	GATC	5 cut(s)	9, 83, 112, 138, 244
NlaIII	CATG	4 cut(s)	127, 166, 175, 231
NsiI	ATGCAT	1 cut(s)	168
NspV	TTCGAA	1 cut(s)	192
PciSI	GCTCTTC	1 cut(s)	15
PfeI	GAWTC	2 cut(s)	64, 431
PkrI	GCNGC	1 cut(s)	6
PleI	GAGTC	1 cut(s)	343
PpsI	GAGTC	1 cut(s)	343
Ppu21I	YACGTR	1 cut(s)	210
PsuI	RGATCY	3 cut(s)	112, 138, 244
RsaI	GTAC	2 cut(s)	212, 310
RsaNI	GTAC	2 cut(s)	211, 309
SapI	GCTCTTC	1 cut(s)	15
SatI	GCNGC	1 cut(s)	5
Sau3AI	GATC	5 cut(s)	9, 83, 112, 138, 244
SchI	GAGTC	1 cut(s)	344
SetI	ASST	4 cut(s)	149, 212, 349, 391
SfuI	TTCGAA	1 cut(s)	192
SmlI	CTYRAG	1 cut(s)	148
SmoI	CTYRAG	1 cut(s)	148
Sse9I	AATT	3 cut(s)	52, 102, 358
SsiI	CCGC	2 cut(s)	5, 262
StyI	CCWWGG	1 cut(s)	398
TaaI	ACNGT	1 cut(s)	328
TaiI	ACGT	2 cut(s)	212, 349
TaqI	TCGA	3 cut(s)	12, 74, 192
TaqII	GACCGA	1 cut(s)	146
TasI	AATT	3 cut(s)	52, 102, 358
TatI	WGTACW	1 cut(s)	308
TauI	GCSGC	1 cut(s)	7
TfiI	GAWTC	2 cut(s)	64, 431
TspDTI	ATGAA	2 cut(s)	84, 193
XapI	RAATTY	1 cut(s)	358
Zsp2I	ATGCAT	1 cut(s)	168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.