Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0008608

Physical Location & Seq

Genomic Coordinates Reverse (-)

28540683 .. 28541558

Gene Structure 876 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0255500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGGTGATTGGGGATTTCAATGAGATTCTGAATAGAGGGGAGAAGATTGCAAGTCCTATCCTGCCGGAGAGACAGATGCGAGGCTTTCGGGAGGCGTTAGGTTACTGTGATCTTCTGGATGTATGTTTTAAAGGGGCGATGGCTACTTGGTGGAATTCTGATACCTTGCTGCAGCTTGATAGGGCTATTTGCACTCCCTCTTGGATCGACATCTTTCACTATGCTAGAGTTTTTCATTTAGCGCCATCAGATTCTGATCACGTTCCTCTCTTGCTACGAGTTAGTTCGGTTCCTCTGTTGGCTAGGCCTAAGTGTCACCGCTTCAAATTCGAAACGTTTTGGCTTCAGCATGAGGATTGTGATAGAGGGGTGATGGAGGCTTGGGGAACGGATGTGTCAGGTACACCCATGTTTTGCGTTACCAAGAAGATCACGCACACTAGAATTCATTTGAATAAATGGCAGAAGGAGGTGTTCCGGGGCCGGCAATTACAAATGATTGGCATTCGCTCTAGATTGGAGGAGTTATTGAGTGTGTTCCTATCAGAGAGAATGCAAATTGAAACGAAGGAGTTGATGGACAAACTGCAGAATTTACTATTCCAAGAGGAGTTGTTTTGGAAGCAACGAGCTAAAATCACATGGTTGGAAGACGGGGACCGTAATACGGTCTTCTTCCATCGGAAAACAGAAAATAGGAAGCGAAAGAATACCTTGCAAGGGCTGTTTGATGAGTATGGGATTTGGCATGAAGATGATGCGGGTATTGAGAGAGTAATTACTGCCTATTTTTCCAAAATGTTTCGAGCCTTTGAAGTTGATGTGGACGCAATGGATGTGACTCTTGCGGCCATTAATCCTTGTGTTACTGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

291

Amino Acids

34.21

Weight (kDa)

6.33

Isoelectric Point (pI)

39.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008608)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62450
fragaria_vesca	FvH4_4g16990
malus_domestica	MD16G1176900.v1.1
prunus_persica	Prupe.1G143700_v2.0.a1 Prupe.1G143700_v2.0.a1
pyrus_communis	pycom16g14840
rosa_chinensis	RchiOBHm_Chr1g0363231 RchiOBHm_Chr4g0420661
rosa_multiflora	Rmu_sc0011080.1_g000011
rosa_roxburghii	Rroxscaffold_4G00293290 Rroxscaffold_5G00363200 Rroxscaffold_6G00393620
rosa_rugosa	Rorug01G0335000 Rorug03G0345100 Rorug05G0255300 Rorug05G0255400 Rorug05G0255500
rosa_samantha	Rh4AG226800 Rh4BG229400 Rh4CG241800 Rh4DG225100
rosa_wichuraiana	Rw1G027870 Rw4G019630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	319, 761, 848
AclI	AACGTT	1 cut(s)	335
AclWI	GGATC	1 cut(s)	212
AcoI	YGGCCR	1 cut(s)	849
AcsI	RAATTY	4 cut(s)	154, 326, 444, 592
AcuI	CTGAAG	1 cut(s)	329
AfaI	GTAC	1 cut(s)	403
AfiI	CCNNNNNNNGG	2 cut(s)	667, 720
AgsI	TTSAA	5 cut(s)	19, 325, 454, 563, 815
AluBI	AGCT	2 cut(s)	175, 632
AluI	AGCT	2 cut(s)	175, 632
Alw26I	GTCTC	1 cut(s)	64
AlwI	GGATC	1 cut(s)	212
AlwNI	CAGNNNCTG	1 cut(s)	254
AoxI	GGCC	3 cut(s)	305, 481, 849
ApeKI	GCWGC	2 cut(s)	169, 172
ApoI	RAATTY	4 cut(s)	154, 326, 444, 592
AseI	ATTAAT	1 cut(s)	855
AspLEI	GCGC	1 cut(s)	244
AspS9I	GGNCC	2 cut(s)	481, 658
AsuC2I	CCSGG	1 cut(s)	479
AsuHPI	GGTGA	3 cut(s)	16, 308, 382
AsuII	TTCGAA	1 cut(s)	330
AvaII	GGWCC	1 cut(s)	658
BbsI	GAAGAC	2 cut(s)	657, 664
BbvI	GCAGC	2 cut(s)	156, 184
BccI	CCATC	5 cut(s)	133, 253, 367, 571, 687
BclI	TGATCA	1 cut(s)	256
BcnI	CCSGG	1 cut(s)	479
BcoDI	GTCTC	1 cut(s)	64
BfaI	CTAG	4 cut(s)	225, 303, 441, 513
BfmI	CTRYAG	2 cut(s)	170, 587
BfoI	RGCGCY	1 cut(s)	245
BisI	GCNGC	3 cut(s)	170, 173, 849
BlsI	GCNGC	3 cut(s)	171, 174, 850
Bme1390I	CCNGG	1 cut(s)	479
Bme18I	GGWCC	1 cut(s)	658
BmgT120I	GGNCC	2 cut(s)	481, 658
BmiI	GGNNCC	3 cut(s)	291, 482, 659
BmrFI	CCNGG	1 cut(s)	479
BmsI	GCATC	2 cut(s)	66, 748
BpiI	GAAGAC	2 cut(s)	657, 664
Bpu14I	TTCGAA	1 cut(s)	330
BpuMI	CCSGG	1 cut(s)	479
BsaBI	GATNNNNATC	2 cut(s)	209, 255
BsaJI	CCNNGG	1 cut(s)	478
Bsc4I	CCNNNNNNNGG	2 cut(s)	667, 720
Bse118I	RCCGGY	1 cut(s)	483
Bse3DI	GCAATG	1 cut(s)	837
Bse8I	GATNNNNATC	2 cut(s)	209, 255
BseDI	CCNNGG	1 cut(s)	478
BseGI	GGATG	3 cut(s)	124, 397, 841
BseJI	GATNNNNATC	2 cut(s)	209, 255
BseLI	CCNNNNNNNGG	2 cut(s)	667, 720
BseMI	GCAATG	1 cut(s)	837
BseMII	CTCAG	1 cut(s)	861
BseRI	GAGGAG	2 cut(s)	536, 623
BseXI	GCAGC	2 cut(s)	156, 184
BshFI	GGCC	3 cut(s)	307, 483, 851
BsiSI	CCGG	3 cut(s)	65, 478, 484
BslFI	GGGAC	1 cut(s)	671
BslI	CCNNNNNNNGG	2 cut(s)	667, 720
BsmAI	GTCTC	1 cut(s)	64
BsmFI	GGGAC	1 cut(s)	671
BsmI	GAATGC	2 cut(s)	504, 558
BsnI	GGCC	3 cut(s)	307, 483, 851
Bsp119I	TTCGAA	1 cut(s)	330
Bsp143I	GATC	4 cut(s)	109, 204, 256, 429
BspACI	CCGC	3 cut(s)	319, 761, 848
BspANI	GGCC	3 cut(s)	307, 483, 851
BspCNI	CTCAG	1 cut(s)	862
BspLI	GGNNCC	3 cut(s)	291, 482, 659
BspMAI	CTGCAG	2 cut(s)	174, 591
BspPI	GGATC	1 cut(s)	212
BspT104I	TTCGAA	1 cut(s)	330
BsrDI	GCAATG	1 cut(s)	837
BsrFI	RCCGGY	1 cut(s)	483
BssAI	RCCGGY	1 cut(s)	483
BssECI	CCNNGG	1 cut(s)	478
BssMI	GATC	4 cut(s)	109, 204, 256, 429
Bst4CI	ACNGT	3 cut(s)	107, 662, 670
BstBI	TTCGAA	1 cut(s)	330
BstC8I	GCNNGC	1 cut(s)	485
BstDEI	CTNAG	2 cut(s)	309, 870
BstF5I	GGATG	3 cut(s)	124, 397, 841
BstH2I	RGCGCY	1 cut(s)	245
BstHHI	GCGC	1 cut(s)	244
BstKTI	GATC	4 cut(s)	112, 207, 259, 432
BstMAI	GTCTC	1 cut(s)	64
BstMBI	GATC	4 cut(s)	109, 204, 256, 429
BstSCI	CCNGG	1 cut(s)	477
BstSFI	CTRYAG	2 cut(s)	170, 587
BstV1I	GCAGC	2 cut(s)	156, 184
BstV2I	GAAGAC	2 cut(s)	657, 664
BsuRI	GGCC	3 cut(s)	307, 483, 851
BtgZI	GCGATG	1 cut(s)	152
BtsCI	GGATG	3 cut(s)	124, 397, 841
Cac8I	GCNNGC	1 cut(s)	485
CaiI	CAGNNNCTG	1 cut(s)	254
CfoI	GCGC	1 cut(s)	244
Cfr10I	RCCGGY	1 cut(s)	483
Cfr13I	GGNCC	2 cut(s)	481, 658
CseI	GACGC	1 cut(s)	836
Csp6I	GTAC	1 cut(s)	402
CviAII	CATG	4 cut(s)	350, 409, 642, 749
CviQI	GTAC	1 cut(s)	402
DdeI	CTNAG	2 cut(s)	309, 870
DpnI	GATC	4 cut(s)	111, 206, 258, 431
DpnII	GATC	4 cut(s)	109, 204, 256, 429
DraI	TTTAAA	1 cut(s)	130
EaeI	YGGCCR	1 cut(s)	849
Eco147I	AGGCCT	1 cut(s)	307
Eco47I	GGWCC	1 cut(s)	658
Eco57I	CTGAAG	1 cut(s)	329
EcoRI	GAATTC	2 cut(s)	154, 444
FaeI	CATG	4 cut(s)	353, 412, 645, 752
FaiI	YATR	7 cut(s)	124, 222, 351, 410, 643, 738, 750
FalI	AAGNNNNNCTT	2 cut(s)	698, 730
FaqI	GGGAC	1 cut(s)	671
FatI	CATG	4 cut(s)	349, 408, 641, 748
FauI	CCCGC	1 cut(s)	754
FbaI	TGATCA	1 cut(s)	256
Fnu4HI	GCNGC	3 cut(s)	170, 173, 849
FokI	GGATG	3 cut(s)	131, 404, 848
Fsp4HI	GCNGC	3 cut(s)	170, 173, 849
FspBI	CTAG	4 cut(s)	225, 303, 441, 513
GlaI	GCGC	1 cut(s)	243
GluI	GCNGC	3 cut(s)	170, 173, 849
HaeII	RGCGCY	1 cut(s)	245
HaeIII	GGCC	3 cut(s)	307, 483, 851
HapII	CCGG	3 cut(s)	65, 478, 484
HgaI	GACGC	1 cut(s)	836
HhaI	GCGC	1 cut(s)	244
Hin1II	CATG	4 cut(s)	353, 412, 645, 752
Hin6I	GCGC	1 cut(s)	242
HinP1I	GCGC	1 cut(s)	242
HinfI	GANTC	3 cut(s)	25, 251, 841
HpaII	CCGG	3 cut(s)	65, 478, 484
HphI	GGTGA	3 cut(s)	16, 308, 382
Hpy166II	GTNNAC	2 cut(s)	404, 826
Hpy188I	TCNGA	6 cut(s)	30, 160, 250, 256, 547, 684
Hpy188III	TCNNGA	3 cut(s)	89, 116, 513
Hpy8I	GTNNAC	2 cut(s)	404, 826
HpyAV	CCTTC	2 cut(s)	460, 562
HpyCH4III	ACNGT	3 cut(s)	107, 662, 670
HpyCH4IV	ACGT	2 cut(s)	261, 335
HpyCH4V	TGCA	6 cut(s)	50, 172, 192, 556, 589, 718
HpyF3I	CTNAG	2 cut(s)	309, 870
HpySE526I	ACGT	2 cut(s)	261, 335
Hsp92II	CATG	4 cut(s)	353, 412, 645, 752
HspAI	GCGC	1 cut(s)	242
KroI	GCCGGC	1 cut(s)	483
KroNI	GCCGGC	1 cut(s)	485
Ksp22I	TGATCA	1 cut(s)	256
Kzo9I	GATC	4 cut(s)	109, 204, 256, 429
LpnPI	CCDG	6 cut(s)	74, 78, 101, 384, 491, 497
Lsp1109I	GCAGC	2 cut(s)	156, 184
LweI	GCATC	2 cut(s)	66, 748
MaeI	CTAG	4 cut(s)	225, 303, 441, 513
MaeII	ACGT	2 cut(s)	261, 335
MaeIII	GTNAC	5 cut(s)	101, 314, 418, 838, 865
MalI	GATC	4 cut(s)	111, 206, 258, 431
MboI	GATC	4 cut(s)	109, 204, 256, 429
MboII	GAAGA	7 cut(s)	55, 104, 439, 662, 664, 667, 764
MluCI	AATT	7 cut(s)	154, 326, 444, 488, 558, 592, 777
MlyI	GAGTC	1 cut(s)	835
MmeI	TCCRAC	1 cut(s)	627
MroNI	GCCGGC	1 cut(s)	483
MseI	TTAA	2 cut(s)	129, 855
MslI	CAYNNNNRTG	1 cut(s)	753
MspI	CCGG	3 cut(s)	65, 478, 484
MspR9I	CCNGG	1 cut(s)	479
Mva1269I	GAATGC	2 cut(s)	504, 558
NaeI	GCCGGC	1 cut(s)	485
NciI	CCSGG	1 cut(s)	479
NdeII	GATC	4 cut(s)	109, 204, 256, 429
NgoMIV	GCCGGC	1 cut(s)	483
NlaIII	CATG	4 cut(s)	353, 412, 645, 752
NlaIV	GGNNCC	3 cut(s)	291, 482, 659
NmuCI	GTSAC	2 cut(s)	314, 838
NspV	TTCGAA	1 cut(s)	330
PceI	AGGCCT	1 cut(s)	307
PctI	GAATGC	2 cut(s)	504, 558
PdiI	GCCGGC	1 cut(s)	485
PfeI	GAWTC	2 cut(s)	25, 251
PkrI	GCNGC	3 cut(s)	171, 174, 850
PleI	GAGTC	1 cut(s)	835
PpsI	GAGTC	1 cut(s)	835
PshBI	ATTAAT	1 cut(s)	855
Psp1406I	AACGTT	1 cut(s)	335
PspN4I	GGNNCC	3 cut(s)	291, 482, 659
PspPI	GGNCC	2 cut(s)	481, 658
PstI	CTGCAG	2 cut(s)	174, 591
PstNI	CAGNNNCTG	1 cut(s)	254
RsaI	GTAC	1 cut(s)	403
RsaNI	GTAC	1 cut(s)	402
RseI	CAYNNNNRTG	1 cut(s)	753
SaqAI	TTAA	2 cut(s)	129, 855
SatI	GCNGC	3 cut(s)	170, 173, 849
Sau3AI	GATC	4 cut(s)	109, 204, 256, 429
Sau96I	GGNCC	2 cut(s)	481, 658
SchI	GAGTC	1 cut(s)	835
ScrFI	CCNGG	1 cut(s)	479
SetI	ASST	9 cut(s)	103, 167, 177, 264, 338, 403, 474, 634, 716
SfaNI	GCATC	2 cut(s)	66, 748
SfcI	CTRYAG	2 cut(s)	170, 587
SfuI	TTCGAA	1 cut(s)	330
SinI	GGWCC	1 cut(s)	658
SmiMI	CAYNNNNRTG	1 cut(s)	753
Sse9I	AATT	7 cut(s)	154, 326, 444, 488, 558, 592, 777
SseBI	AGGCCT	1 cut(s)	307
SsiI	CCGC	3 cut(s)	319, 761, 848
SspMI	CTAG	4 cut(s)	225, 303, 441, 513
StuI	AGGCCT	1 cut(s)	307
StyD4I	CCNGG	1 cut(s)	477
TaaI	ACNGT	3 cut(s)	107, 662, 670
TaiI	ACGT	2 cut(s)	264, 338
TaqI	TCGA	3 cut(s)	207, 330, 805
TasI	AATT	7 cut(s)	154, 326, 444, 488, 558, 592, 777
TauI	GCSGC	1 cut(s)	851
TfiI	GAWTC	2 cut(s)	25, 251
Tru1I	TTAA	2 cut(s)	129, 855
Tru9I	TTAA	2 cut(s)	129, 855
TseFI	GTSAC	2 cut(s)	314, 838
TseI	GCWGC	2 cut(s)	169, 172
Tsp45I	GTSAC	2 cut(s)	314, 838
TspDTI	ATGAA	3 cut(s)	224, 437, 765
TspGWI	ACGGA	1 cut(s)	404
VpaK11BI	GGWCC	1 cut(s)	658
VspI	ATTAAT	1 cut(s)	855
XapI	RAATTY	4 cut(s)	154, 326, 444, 592
XbaI	TCTAGA	1 cut(s)	512
XspI	CTAG	4 cut(s)	225, 303, 441, 513

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.