Rh4BG229400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0008608
Physical Location & Seq
Reverse (-)
39377735 .. 39385118
7384 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG229400.1

Sequence Viewer

Length: 327 bp
ATGACGACTGTAAGATCACTGATGACACTAGAGTCCGAGCAGCTATCCCCACCATCAAGTACTTGCTCGGAAATGGTGCCAGAGTCATCCTCGCTTCCCGCTTGTGAATATGAAGTTTCTAGATTGGTATTTGAAGATCGCATTCGGGTCGGCTCTCATTGGAGCTTCCATGGAGTTTTTCATGATCAAAACCGGCTTCTGTATGATAAAGTAACAGTTCTGGAGTCTGAAAAACGTGCTTGGGAGAATTCGCCAGAGGCTCAGGCAGTCAGAGAAGCTCTCAATCCTTGGAGAAATCGTGATGTGGAAGCAAAGAAAGAATCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

108

Amino Acids

12.44

Weight (kDa)

5.19

Isoelectric Point (pI)

61.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 31
AccB1I GGYRCC 1 cut(s) 76
AciI CCGC 1 cut(s) 99
AcsI RAATTY 1 cut(s) 247
AfaI GTAC 1 cut(s) 61
AgsI TTSAA 1 cut(s) 134
AluBI AGCT 3 cut(s) 43, 165, 278
AluI AGCT 3 cut(s) 43, 165, 278
ApeKI GCWGC 1 cut(s) 40
ApoI RAATTY 1 cut(s) 247
BanI GGYRCC 1 cut(s) 76
BbvI GCAGC 1 cut(s) 52
BccI CCATC 1 cut(s) 61
BcgI CGANNNNNNTGC 2 cut(s) 130, 164
BclI TGATCA 1 cut(s) 184
BfaI CTAG 2 cut(s) 29, 120
BisI GCNGC 1 cut(s) 41
BlsI GCNGC 1 cut(s) 42
BmcAI AGTACT 1 cut(s) 61
BmiI GGNNCC 1 cut(s) 78
BplI GAGNNNNNCTC 4 cut(s) 74, 106, 264, 296
BpmI CTGGAG 1 cut(s) 242
Bpu10I CCTNAGC 1 cut(s) 261
BsaJI CCNNGG 2 cut(s) 169, 287
BsaXI ACNNNNNCTCC 2 cut(s) 283, 313
Bse118I RCCGGY 1 cut(s) 192
BseDI CCNNGG 2 cut(s) 169, 287
BseGI GGATG 1 cut(s) 86
BseMII CTCAG 1 cut(s) 275
BseXI GCAGC 1 cut(s) 52
BshNI GGYRCC 1 cut(s) 76
BsiSI CCGG 1 cut(s) 193
BsmI GAATGC 1 cut(s) 141
Bsp143I GATC 3 cut(s) 14, 136, 184
Bsp19I CCATGG 1 cut(s) 169
BspACI CCGC 1 cut(s) 99
BspCNI CTCAG 1 cut(s) 274
BspHI TCATGA 1 cut(s) 181
BspLI GGNNCC 1 cut(s) 78
BspT107I GGYRCC 1 cut(s) 76
BsrFI RCCGGY 1 cut(s) 192
BssAI RCCGGY 1 cut(s) 192
BssECI CCNNGG 2 cut(s) 169, 287
BssMI GATC 3 cut(s) 14, 136, 184
BssT1I CCWWGG 2 cut(s) 169, 287
Bst4CI ACNGT 2 cut(s) 10, 217
BstDEI CTNAG 1 cut(s) 261
BstDSI CCRYGG 1 cut(s) 169
BstF5I GGATG 1 cut(s) 86
BstKTI GATC 3 cut(s) 17, 139, 187
BstMBI GATC 3 cut(s) 14, 136, 184
BstV1I GCAGC 1 cut(s) 52
BtgI CCRYGG 1 cut(s) 169
BtsCI GGATG 1 cut(s) 86
BtsIMutI CAGTG 1 cut(s) 17
CciI TCATGA 1 cut(s) 181
Cfr10I RCCGGY 1 cut(s) 192
Csp6I GTAC 1 cut(s) 60
CviAII CATG 2 cut(s) 170, 182
CviJI RGCY 6 cut(s) 43, 153, 165, 196, 260, 278
CviKI_1 RGCY 6 cut(s) 43, 153, 165, 196, 260, 278
CviQI GTAC 1 cut(s) 60
DdeI CTNAG 1 cut(s) 261
DpnI GATC 3 cut(s) 16, 138, 186
DpnII GATC 3 cut(s) 14, 136, 184
DrdI GACNNNNNNGTC 1 cut(s) 31
DseDI GACNNNNNNGTC 1 cut(s) 31
Eco130I CCWWGG 2 cut(s) 169, 287
EcoRI GAATTC 1 cut(s) 247
EcoT14I CCWWGG 2 cut(s) 169, 287
ErhI CCWWGG 2 cut(s) 169, 287
FaeI CATG 2 cut(s) 173, 185
FaiI YATR 4 cut(s) 111, 171, 183, 204
FatI CATG 2 cut(s) 169, 181
FauI CCCGC 1 cut(s) 106
FbaI TGATCA 1 cut(s) 184
Fnu4HI GCNGC 1 cut(s) 41
FokI GGATG 1 cut(s) 73
Fsp4HI GCNGC 1 cut(s) 41
FspBI CTAG 2 cut(s) 29, 120
GluI GCNGC 1 cut(s) 41
GsuI CTGGAG 1 cut(s) 242
HapII CCGG 1 cut(s) 193
Hin1II CATG 2 cut(s) 173, 185
HinfI GANTC 4 cut(s) 32, 83, 224, 320
HpaII CCGG 1 cut(s) 193
Hpy188I TCNGA 4 cut(s) 37, 70, 229, 272
Hpy188III TCNNGA 4 cut(s) 120, 182, 221, 299
HpyCH4III ACNGT 2 cut(s) 10, 217
HpyCH4IV ACGT 1 cut(s) 235
HpyF3I CTNAG 1 cut(s) 261
HpySE526I ACGT 1 cut(s) 235
Hsp92II CATG 2 cut(s) 173, 185
Ksp22I TGATCA 1 cut(s) 184
Kzo9I GATC 3 cut(s) 14, 136, 184
LmnI GCTCC 1 cut(s) 162
LpnPI CCDG 5 cut(s) 93, 206, 206, 248, 267
Lsp1109I GCAGC 1 cut(s) 52
MaeI CTAG 2 cut(s) 29, 120
MaeII ACGT 1 cut(s) 235
MaeIII GTNAC 1 cut(s) 211
MalI GATC 3 cut(s) 16, 138, 186
MboI GATC 3 cut(s) 14, 136, 184
MboII GAAGA 1 cut(s) 146
MluCI AATT 1 cut(s) 247
MlyI GAGTC 3 cut(s) 41, 92, 233
MnlI CCTC 2 cut(s) 100, 250
MspI CCGG 1 cut(s) 193
Mva1269I GAATGC 1 cut(s) 141
NcoI CCATGG 1 cut(s) 169
NdeII GATC 3 cut(s) 14, 136, 184
NlaIII CATG 2 cut(s) 173, 185
NlaIV GGNNCC 1 cut(s) 78
PagI TCATGA 1 cut(s) 181
PctI GAATGC 1 cut(s) 141
PfeI GAWTC 1 cut(s) 320
PkrI GCNGC 1 cut(s) 42
PleI GAGTC 3 cut(s) 40, 91, 232
PpsI GAGTC 3 cut(s) 40, 91, 232
PspN4I GGNNCC 1 cut(s) 78
RsaI GTAC 1 cut(s) 61
RsaNI GTAC 1 cut(s) 60
SatI GCNGC 1 cut(s) 41
Sau3AI GATC 3 cut(s) 14, 136, 184
ScaI AGTACT 1 cut(s) 61
SchI GAGTC 3 cut(s) 41, 92, 233
SetI ASST 4 cut(s) 45, 167, 238, 280
Sse9I AATT 1 cut(s) 247
SsiI CCGC 1 cut(s) 99
SspMI CTAG 2 cut(s) 29, 120
StyI CCWWGG 2 cut(s) 169, 287
TaaI ACNGT 2 cut(s) 10, 217
TaiI ACGT 1 cut(s) 238
TasI AATT 1 cut(s) 247
TatI WGTACW 1 cut(s) 59
TfiI GAWTC 1 cut(s) 320
TscAI CASTG 1 cut(s) 24
TseI GCWGC 1 cut(s) 40
TspDTI ATGAA 2 cut(s) 126, 170
TspRI CASTG 1 cut(s) 24
XapI RAATTY 1 cut(s) 247
XbaI TCTAGA 1 cut(s) 119
XspI CTAG 2 cut(s) 29, 120
ZrmI AGTACT 1 cut(s) 61
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.