Rorug03G0345100

divergent subfamily of APPLE domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000412
Physical Location & Seq
Forward (+)
41695962 .. 41703470
7509 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0345100.1

Sequence Viewer

Length: 507 bp
ATGAGTCGGCACCCGGAGGTTCTTTGGGCGCAGCGGTCCGATAAAGTATACCTGACGGTGGCGTTACCGGATGCGAAAGACATAAGCGTCAAGTGTGAGCCCGAGGGCTTGTTCGCCTTCTCCGCCACCGGAGTCCAAGGAGAGTCCTTTCACTTCACTTTGGAGCTCTACGGACAGATACTACCTCAGAGATGGGAGCTCGGGAATTCGTTGTTGCAGGGTTGTAAAACTAAGGCTGGCTCAAGGAACATCCTCTGCTCCATCCAGAAACTACACAAAGCTTGGTGGCAACGACTTCTCAAGACCCAAGAAAAACCTGCCCCTTACATTAAGGTCGATTGGAACAATTGGTGCGACGAGGACGACGAACTAGACTCCACTTCTAATTTGGCCTCTGATGATGATGATTCTGATGCTGATGCTGCGAATATCGGCGAAGATGAAGGAAGCAGCGAAGATGAAGGAATGCTCTATCTTCCCGACCTGGAGAAGGCACGAAAAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin GUB_WAK_bind PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

168

Amino Acids

18.96

Weight (kDa)

4.63

Isoelectric Point (pI)

45.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000412)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03230 AT4G03230 AT4G03230 AT4G03230 AT4G03230 AT4G03230 AT4G03230 AT4G03230
fragaria_vesca FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44244 FvH4_6g44245 FvH4_6g44245 FvH4_6g44260
malus_domestica MD04G1084700.v1.1 MD09G1099700.v1.1 MD09G1099800.v1.1 MD09G1099900.v1.1 MD09G1100000.v1.1 MD09G1100100.v1.1 MD17G1087900.v1.1
prunus_persica Prupe.3G226000_v2.0.a1 Prupe.3G226200_v2.0.a1 Prupe.3G226300_v2.0.a1 Prupe.3G226300_v2.0.a1 Prupe.3G226600_v2.0.a1 Prupe.3G226700_v2.0.a1
pyrus_communis pycom02g23070 pycom07g15320 pycom09g02310 pycom09g02330 pycom09g02340 pycom09g02350 pycom09g02360 pycom09g02400 pycom09g02410 pycom09g02430 pycom10g07020 pycom17g08490
rosa_chinensis RchiOBHm_Chr1g0328701 RchiOBHm_Chr2g0161021 RchiOBHm_Chr2g0161031 RchiOBHm_Chr2g0161081 RchiOBHm_Chr2g0161101
rosa_laevigata RLG00000021249 RLG00000021250 RLG00000021251 RLG00000021253 RLG00000021257 RLG00000029922
rosa_multiflora Rmu_sc0000955.1_g000023 Rmu_sc0000955.1_g000025 Rmu_sc0000955.1_g000041 Rmu_sc0002312.1_g000012 Rmu_sc0002481.1_g000021 Rmu_sc0002481.1_g000026 Rmu_sc0002481.1_g000028 Rmu_sc0002481.1_g000039 Rmu_sc0006420.1_g000017
rosa_roxburghii Rroxscaffold_2G00089160 Rroxscaffold_2G00089200 Rroxscaffold_2G00089220 Rroxscaffold_2G00089270 Rroxscaffold_2G00089300 Rroxscaffold_4G00321430
rosa_rugosa Rorug02G0485900 Rorug02G0486100 Rorug03G0345100
rosa_samantha Rh1AG094100 Rh1DG097200 Rh2AG552000 Rh2AG552100 Rh2AG552200 Rh2AG552300 Rh2AG552500 Rh2BG566400 Rh2BG566500 Rh2CG535800 Rh2CG535900 Rh2CG536100 Rh2CG536200 Rh2DG575000 Rh2DG575100 Rh2DG575400 Rh2DG575500 Rh2DG575600 Rh4AG077200 Rh4CG082400
rosa_wichuraiana Rw2G045690 Rw2G045700 Rw2G045710 Rw4G006230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 86
Acc36I ACCTGC 1 cut(s) 325
AccB1I GGYRCC 1 cut(s) 9
AccI GTMKAC 1 cut(s) 48
AciI CCGC 2 cut(s) 34, 123
AcsI RAATTY 1 cut(s) 205
AfiI CCNNNNNNNGG 2 cut(s) 58, 490
AjnI CCWGG 1 cut(s) 483
AluBI AGCT 3 cut(s) 166, 199, 281
AluI AGCT 3 cut(s) 166, 199, 281
Alw21I GWGCWC 2 cut(s) 168, 201
Ama87I CYCGRG 2 cut(s) 101, 200
AoxI GGCC 1 cut(s) 390
ApeKI GCWGC 3 cut(s) 31, 422, 450
ApoI RAATTY 1 cut(s) 205
AspLEI GCGC 1 cut(s) 31
AspS9I GGNCC 1 cut(s) 36
AsuC2I CCSGG 1 cut(s) 14
AvaI CYCGRG 2 cut(s) 101, 200
AvaII GGWCC 1 cut(s) 36
BanI GGYRCC 1 cut(s) 9
BanII GRGCYC 3 cut(s) 102, 168, 201
Bbv12I GWGCWC 2 cut(s) 168, 201
BbvI GCAGC 3 cut(s) 43, 409, 462
BccI CCATC 2 cut(s) 186, 269
BciT130I CCWGG 1 cut(s) 485
BcnI CCSGG 1 cut(s) 14
BfaI CTAG 1 cut(s) 371
BfuAI ACCTGC 1 cut(s) 325
BisI GCNGC 3 cut(s) 32, 423, 451
BlsI GCNGC 3 cut(s) 33, 424, 452
Bme1390I CCNGG 2 cut(s) 14, 485
Bme18I GGWCC 1 cut(s) 36
BmeT110I CYCGRG 2 cut(s) 101, 200
BmgT120I GGNCC 1 cut(s) 36
BmiI GGNNCC 1 cut(s) 11
BmrFI CCNGG 2 cut(s) 14, 485
BmsI GCATC 3 cut(s) 61, 403, 409
BpmI CTGGAG 1 cut(s) 506
BpuEI CTTGAG 2 cut(s) 226, 284
BpuMI CCSGG 1 cut(s) 14
BsaJI CCNNGG 2 cut(s) 102, 136
BsaWI WCCGGW 2 cut(s) 67, 128
Bsc4I CCNNNNNNNGG 2 cut(s) 58, 490
BseBI CCWGG 1 cut(s) 485
BseDI CCNNGG 2 cut(s) 102, 136
BseGI GGATG 3 cut(s) 76, 249, 261
BseLI CCNNNNNNNGG 2 cut(s) 58, 490
BseMII CTCAG 1 cut(s) 200
BseXI GCAGC 3 cut(s) 43, 409, 462
BshFI GGCC 1 cut(s) 392
BshNI GGYRCC 1 cut(s) 9
BsiHKAI GWGCWC 2 cut(s) 168, 201
BsiHKCI CYCGRG 2 cut(s) 101, 200
BsiSI CCGG 3 cut(s) 14, 68, 129
BslI CCNNNNNNNGG 2 cut(s) 58, 490
BsmI GAATGC 1 cut(s) 471
BsnI GGCC 1 cut(s) 392
BsoBI CYCGRG 2 cut(s) 101, 200
Bsp1286I GDGCHC 3 cut(s) 102, 168, 201
BspACI CCGC 2 cut(s) 34, 123
BspANI GGCC 1 cut(s) 392
BspCNI CTCAG 1 cut(s) 199
BspLI GGNNCC 1 cut(s) 11
BspMI ACCTGC 1 cut(s) 325
BspT107I GGYRCC 1 cut(s) 9
BssECI CCNNGG 2 cut(s) 102, 136
BssNAI GTATAC 1 cut(s) 49
BssT1I CCWWGG 1 cut(s) 136
Bst1107I GTATAC 1 cut(s) 49
Bst2UI CCWGG 1 cut(s) 485
Bst4CI ACNGT 1 cut(s) 58
BstC8I GCNNGC 1 cut(s) 238
BstDEI CTNAG 2 cut(s) 186, 231
BstENI CCTNNNNNAGG 1 cut(s) 488
BstF5I GGATG 3 cut(s) 76, 249, 261
BstHHI GCGC 1 cut(s) 31
BstMWI GCNNNNNNNGC 2 cut(s) 122, 422
BstNI CCWGG 1 cut(s) 485
BstSCI CCNGG 2 cut(s) 12, 483
BstV1I GCAGC 3 cut(s) 43, 409, 462
BstZ17I GTATAC 1 cut(s) 49
BsuRI GGCC 1 cut(s) 392
BtsCI GGATG 3 cut(s) 76, 249, 261
BveI ACCTGC 1 cut(s) 325
Cac8I GCNNGC 1 cut(s) 238
CfoI GCGC 1 cut(s) 31
Cfr13I GGNCC 1 cut(s) 36
CpoI CGGWCCG 1 cut(s) 36
CseI GACGC 1 cut(s) 76
CspI CGGWCCG 1 cut(s) 36
CviJI RGCY 8 cut(s) 100, 108, 166, 199, 236, 240, 281, 392
CviKI_1 RGCY 8 cut(s) 100, 108, 166, 199, 236, 240, 281, 392
DdeI CTNAG 2 cut(s) 186, 231
DrdI GACNNNNNNGTC 1 cut(s) 86
DseDI GACNNNNNNGTC 1 cut(s) 86
EciI GGCGGA 1 cut(s) 112
Ecl136II GAGCTC 2 cut(s) 166, 199
Eco130I CCWWGG 1 cut(s) 136
Eco24I GRGCYC 3 cut(s) 102, 168, 201
Eco47I GGWCC 1 cut(s) 36
Eco53kI GAGCTC 2 cut(s) 166, 199
Eco88I CYCGRG 2 cut(s) 101, 200
EcoICRI GAGCTC 2 cut(s) 166, 199
EcoNI CCTNNNNNAGG 1 cut(s) 488
EcoRI GAATTC 1 cut(s) 205
EcoRII CCWGG 1 cut(s) 483
EcoT14I CCWWGG 1 cut(s) 136
EcoT38I GRGCYC 3 cut(s) 102, 168, 201
ErhI CCWWGG 1 cut(s) 136
FaiI YATR 2 cut(s) 49, 83
FblI GTMKAC 1 cut(s) 48
Fnu4HI GCNGC 3 cut(s) 32, 423, 451
FokI GGATG 3 cut(s) 83, 236, 248
FriOI GRGCYC 3 cut(s) 102, 168, 201
Fsp4HI GCNGC 3 cut(s) 32, 423, 451
FspBI CTAG 1 cut(s) 371
GlaI GCGC 1 cut(s) 30
GluI GCNGC 3 cut(s) 32, 423, 451
GsuI CTGGAG 1 cut(s) 506
HaeIII GGCC 1 cut(s) 392
HapII CCGG 3 cut(s) 14, 68, 129
HgaI GACGC 1 cut(s) 76
HhaI GCGC 1 cut(s) 31
Hin6I GCGC 1 cut(s) 29
HinP1I GCGC 1 cut(s) 29
HindIII AAGCTT 1 cut(s) 279
HinfI GANTC 5 cut(s) 4, 132, 143, 374, 407
HpaII CCGG 3 cut(s) 14, 68, 129
Hpy166II GTNNAC 1 cut(s) 49
Hpy188I TCNGA 4 cut(s) 40, 189, 397, 412
Hpy188III TCNNGA 4 cut(s) 202, 265, 301, 479
Hpy8I GTNNAC 1 cut(s) 49
Hpy99I CGWCG 2 cut(s) 359, 368
HpyAV CCTTC 4 cut(s) 127, 437, 455, 484
HpyCH4III ACNGT 1 cut(s) 58
HpyCH4V TGCA 1 cut(s) 217
HpyF10VI GCNNNNNNNGC 2 cut(s) 122, 422
HpyF3I CTNAG 2 cut(s) 186, 231
HspAI GCGC 1 cut(s) 29
LmnI GCTCC 3 cut(s) 163, 196, 263
Lsp1109I GCAGC 3 cut(s) 43, 409, 462
LweI GCATC 3 cut(s) 61, 403, 409
MaeI CTAG 1 cut(s) 371
MaeIII GTNAC 1 cut(s) 63
MboII GAAGA 3 cut(s) 449, 467, 467
MfeI CAATTG 1 cut(s) 346
MhlI GDGCHC 3 cut(s) 102, 168, 201
MluCI AATT 3 cut(s) 205, 346, 385
MlyI GAGTC 4 cut(s) 13, 141, 152, 368
MnlI CCTC 6 cut(s) 10, 97, 195, 263, 352, 403
MseI TTAA 1 cut(s) 330
MspA1I CMGCKG 1 cut(s) 34
MspI CCGG 3 cut(s) 14, 68, 129
MspR9I CCNGG 2 cut(s) 14, 485
MunI CAATTG 1 cut(s) 346
Mva1269I GAATGC 1 cut(s) 471
MvaI CCWGG 1 cut(s) 485
MwoI GCNNNNNNNGC 2 cut(s) 122, 422
NciI CCSGG 1 cut(s) 14
NlaIV GGNNCC 1 cut(s) 11
PcsI WCGNNNNNNNCGW 1 cut(s) 363
PctI GAATGC 1 cut(s) 471
PfeI GAWTC 1 cut(s) 407
PkrI GCNGC 3 cut(s) 33, 424, 452
PleI GAGTC 4 cut(s) 12, 140, 151, 368
PpsI GAGTC 4 cut(s) 12, 140, 151, 368
Psp124BI GAGCTC 2 cut(s) 168, 201
Psp6I CCWGG 1 cut(s) 483
PspGI CCWGG 1 cut(s) 483
PspN4I GGNNCC 1 cut(s) 11
PspPI GGNCC 1 cut(s) 36
Rsr2I CGGWCCG 1 cut(s) 36
RsrII CGGWCCG 1 cut(s) 36
SacI GAGCTC 2 cut(s) 168, 201
SaqAI TTAA 1 cut(s) 330
SatI GCNGC 3 cut(s) 32, 423, 451
Sau96I GGNCC 1 cut(s) 36
SchI GAGTC 4 cut(s) 13, 141, 152, 368
ScrFI CCNGG 2 cut(s) 14, 485
SduI GDGCHC 3 cut(s) 102, 168, 201
SetI ASST 9 cut(s) 21, 54, 168, 187, 201, 283, 319, 336, 486
SfaNI GCATC 3 cut(s) 61, 403, 409
SinI GGWCC 1 cut(s) 36
SmlI CTYRAG 2 cut(s) 241, 299
SmoI CTYRAG 2 cut(s) 241, 299
Sse9I AATT 3 cut(s) 205, 346, 385
SsiI CCGC 2 cut(s) 34, 123
SspMI CTAG 1 cut(s) 371
SstI GAGCTC 2 cut(s) 168, 201
StyD4I CCNGG 2 cut(s) 12, 483
StyI CCWWGG 1 cut(s) 136
TaaI ACNGT 1 cut(s) 58
TaqI TCGA 1 cut(s) 336
TasI AATT 3 cut(s) 205, 346, 385
TfiI GAWTC 1 cut(s) 407
Tru1I TTAA 1 cut(s) 330
Tru9I TTAA 1 cut(s) 330
TseI GCWGC 3 cut(s) 31, 422, 450
TspDTI ATGAA 2 cut(s) 456, 474
TspGWI ACGGA 1 cut(s) 186
VpaK11BI GGWCC 1 cut(s) 36
XagI CCTNNNNNAGG 1 cut(s) 488
XapI RAATTY 1 cut(s) 205
XcmI CCANNNNNNNNNTGG 1 cut(s) 385
XmiI GTMKAC 1 cut(s) 48
XspI CTAG 1 cut(s) 371
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.