Rmu_sc0002481.1_g000039

PAN-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002481.1
OG0000412
Physical Location & Seq
Reverse (-)
142626 .. 143384
759 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002481.1_g000039.1.cds

Sequence Viewer

Length: 759 bp
atgctatcttccatcttcttatcatatgaactcttgttgtgcttttctcaccccttctgctctgctagagatacaataaccgaagatgatccaattatagatgatggatcagaaggtcttgtttcaactggaggaaaatttgaactgggattctttcccctacatggaagaggaagctcaggcagttatagaagatatgttggcatatggtatcacaacatgactccaaggacagttatatgggttgccaacagagacaagccactacttgccaatcacactggagttcttgcaattaatcagggtaccctccaagtgttggatataacttctagaaagtctttatggtcggcagaggtcgaagtaataccttctttcaatcggacagtgaaactcaaggatgatgggaacttggtgttaagtgatattgatgcacatatggcagcagttctgtggcaaagctttgaaaatcctactgatacattcattcctgggatgataatggataaaaacttaattctgacttcatggaacgacaaacatgacccaagaaccgggaactttacctttgaagtagatgaagacaaccagtatatcaagaaatcagctgcaggttactggagaagtgaaccaccaaatggtaattctttcagctcagatgaaatgcctgctgcagttgcttgcttactatcaaatttcagcaagagttattcatcaaaaagttccagcaaaattttcaatgcttcgggttcacactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

252

Amino Acids

28.02

Weight (kDa)

5.46

Isoelectric Point (pI)

25.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000412)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03230 AT4G03230 AT4G03230 AT4G03230 AT4G03230 AT4G03230 AT4G03230 AT4G03230
fragaria_vesca FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44244 FvH4_6g44245 FvH4_6g44245 FvH4_6g44260
malus_domestica MD04G1084700.v1.1 MD09G1099700.v1.1 MD09G1099800.v1.1 MD09G1099900.v1.1 MD09G1100000.v1.1 MD09G1100100.v1.1 MD17G1087900.v1.1
prunus_persica Prupe.3G226000_v2.0.a1 Prupe.3G226200_v2.0.a1 Prupe.3G226300_v2.0.a1 Prupe.3G226300_v2.0.a1 Prupe.3G226600_v2.0.a1 Prupe.3G226700_v2.0.a1
pyrus_communis pycom02g23070 pycom07g15320 pycom09g02310 pycom09g02330 pycom09g02340 pycom09g02350 pycom09g02360 pycom09g02400 pycom09g02410 pycom09g02430 pycom10g07020 pycom17g08490
rosa_chinensis RchiOBHm_Chr1g0328701 RchiOBHm_Chr2g0161021 RchiOBHm_Chr2g0161031 RchiOBHm_Chr2g0161081 RchiOBHm_Chr2g0161101
rosa_laevigata RLG00000021249 RLG00000021250 RLG00000021251 RLG00000021253 RLG00000021257 RLG00000029922
rosa_multiflora Rmu_sc0000955.1_g000023 Rmu_sc0000955.1_g000025 Rmu_sc0000955.1_g000041 Rmu_sc0002312.1_g000012 Rmu_sc0002481.1_g000021 Rmu_sc0002481.1_g000026 Rmu_sc0002481.1_g000028 Rmu_sc0002481.1_g000039 Rmu_sc0006420.1_g000017
rosa_roxburghii Rroxscaffold_2G00089160 Rroxscaffold_2G00089200 Rroxscaffold_2G00089220 Rroxscaffold_2G00089270 Rroxscaffold_2G00089300 Rroxscaffold_4G00321430
rosa_rugosa Rorug02G0485900 Rorug02G0486100 Rorug03G0345100
rosa_samantha Rh1AG094100 Rh1DG097200 Rh2AG552000 Rh2AG552100 Rh2AG552200 Rh2AG552300 Rh2AG552500 Rh2BG566400 Rh2BG566500 Rh2CG535800 Rh2CG535900 Rh2CG536100 Rh2CG536200 Rh2DG575000 Rh2DG575100 Rh2DG575400 Rh2DG575500 Rh2DG575600 Rh4AG077200 Rh4CG082400
rosa_wichuraiana Rw2G045690 Rw2G045700 Rw2G045710 Rw4G006230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 602
Acc65I GGTACC 1 cut(s) 305
AccB1I GGYRCC 1 cut(s) 305
AccB7I CCANNNNNTGG 2 cut(s) 319, 638
AclWI GGATC 2 cut(s) 83, 115
AcsI RAATTY 3 cut(s) 137, 694, 732
AfaI GTAC 1 cut(s) 307
AfiI CCNNNNNNNGG 4 cut(s) 164, 319, 554, 638
AgsI TTSAA 6 cut(s) 126, 143, 379, 467, 572, 739
AjnI CCWGG 1 cut(s) 490
AjuI GAANNNNNNNTTGG 2 cut(s) 628, 660
AluBI AGCT 4 cut(s) 177, 462, 608, 654
AluI AGCT 4 cut(s) 177, 462, 608, 654
Alw26I GTCTC 1 cut(s) 249
AlwI GGATC 2 cut(s) 83, 115
ApeKI GCWGC 3 cut(s) 443, 608, 671
ApoI RAATTY 3 cut(s) 137, 694, 732
AseI ATTAAT 1 cut(s) 297
Asp718I GGTACC 1 cut(s) 305
AsuC2I CCSGG 1 cut(s) 556
AsuHPI GGTGA 1 cut(s) 41
BanI GGYRCC 1 cut(s) 305
BbsI GAAGAC 1 cut(s) 588
BbvI GCAGC 3 cut(s) 455, 595, 658
BccI CCATC 3 cut(s) 20, 98, 398
BciT130I CCWGG 1 cut(s) 492
BcnI CCSGG 1 cut(s) 556
BcoDI GTCTC 1 cut(s) 249
BfaI CTAG 3 cut(s) 66, 333, 757
BfmI CTRYAG 2 cut(s) 609, 672
BfuAI ACCTGC 1 cut(s) 602
BisI GCNGC 3 cut(s) 444, 609, 672
BlsI GCNGC 3 cut(s) 445, 610, 673
Bme1390I CCNGG 2 cut(s) 492, 556
BmiI GGNNCC 1 cut(s) 307
BmrFI CCNGG 2 cut(s) 492, 556
BmrI ACTGGG 1 cut(s) 155
BmsI GCATC 1 cut(s) 421
BmuI ACTGGG 1 cut(s) 155
BpiI GAAGAC 1 cut(s) 588
BpmI CTGGAG 3 cut(s) 150, 303, 640
Bpu10I CCTNAGC 1 cut(s) 178
BpuEI CTTGAG 1 cut(s) 380
BpuMI CCSGG 1 cut(s) 556
BsaJI CCNNGG 2 cut(s) 227, 491
Bsc4I CCNNNNNNNGG 4 cut(s) 164, 319, 554, 638
Bse1I ACTGG 5 cut(s) 133, 150, 286, 589, 623
BseBI CCWGG 1 cut(s) 492
BseDI CCNNGG 2 cut(s) 227, 491
BseGI GGATG 2 cut(s) 406, 501
BseLI CCNNNNNNNGG 4 cut(s) 164, 319, 554, 638
BseMII CTCAG 2 cut(s) 192, 669
BseNI ACTGG 5 cut(s) 133, 150, 286, 589, 623
BseXI GCAGC 3 cut(s) 455, 595, 658
BshNI GGYRCC 1 cut(s) 305
BsiSI CCGG 1 cut(s) 555
BslI CCNNNNNNNGG 4 cut(s) 164, 319, 554, 638
BsmAI GTCTC 1 cut(s) 249
Bsp143I GATC 2 cut(s) 88, 107
BspCNI CTCAG 2 cut(s) 191, 668
BspLI GGNNCC 1 cut(s) 307
BspMAI CTGCAG 2 cut(s) 613, 676
BspMI ACCTGC 1 cut(s) 602
BspPI GGATC 2 cut(s) 83, 115
BspT107I GGYRCC 1 cut(s) 305
BsrI ACTGG 5 cut(s) 133, 150, 286, 589, 623
BssECI CCNNGG 2 cut(s) 227, 491
BssMI GATC 2 cut(s) 88, 107
BssT1I CCWWGG 1 cut(s) 227
Bst2UI CCWGG 1 cut(s) 492
Bst4CI ACNGT 2 cut(s) 235, 388
Bst6I CTCTTC 1 cut(s) 163
BstC8I GCNNGC 2 cut(s) 669, 682
BstDEI CTNAG 2 cut(s) 178, 655
BstF5I GGATG 2 cut(s) 406, 501
BstKTI GATC 2 cut(s) 91, 110
BstMAI GTCTC 1 cut(s) 249
BstMBI GATC 2 cut(s) 88, 107
BstMWI GCNNNNNNNGC 2 cut(s) 440, 677
BstNI CCWGG 1 cut(s) 492
BstSCI CCNGG 2 cut(s) 490, 554
BstSFI CTRYAG 2 cut(s) 609, 672
BstV1I GCAGC 3 cut(s) 455, 595, 658
BstV2I GAAGAC 1 cut(s) 588
BtsCI GGATG 2 cut(s) 406, 501
BtsIMutI CAGTG 2 cut(s) 279, 393
BveI ACCTGC 1 cut(s) 602
Cac8I GCNNGC 2 cut(s) 669, 682
Csp6I GTAC 1 cut(s) 306
CviAII CATG 4 cut(s) 164, 220, 528, 542
CviJI RGCY 5 cut(s) 177, 262, 462, 608, 654
CviKI_1 RGCY 5 cut(s) 177, 262, 462, 608, 654
CviQI GTAC 1 cut(s) 306
DdeI CTNAG 2 cut(s) 178, 655
DpnI GATC 2 cut(s) 90, 109
DpnII GATC 2 cut(s) 88, 107
Eam1104I CTCTTC 1 cut(s) 163
EarI CTCTTC 1 cut(s) 163
Eco130I CCWWGG 1 cut(s) 227
EcoRII CCWGG 1 cut(s) 490
EcoT14I CCWWGG 1 cut(s) 227
ErhI CCWWGG 1 cut(s) 227
FaeI CATG 4 cut(s) 167, 223, 531, 545
FatI CATG 4 cut(s) 163, 219, 527, 541
FauNDI CATATG 3 cut(s) 25, 206, 438
Fnu4HI GCNGC 3 cut(s) 444, 609, 672
FokI GGATG 2 cut(s) 413, 508
Fsp4HI GCNGC 3 cut(s) 444, 609, 672
FspBI CTAG 3 cut(s) 66, 333, 757
GluI GCNGC 3 cut(s) 444, 609, 672
GsuI CTGGAG 3 cut(s) 150, 303, 640
HapII CCGG 1 cut(s) 555
Hin1II CATG 4 cut(s) 167, 223, 531, 545
HindIII AAGCTT 1 cut(s) 460
HinfI GANTC 2 cut(s) 150, 223
HpaII CCGG 1 cut(s) 555
HphI GGTGA 1 cut(s) 41
Hpy166II GTNNAC 2 cut(s) 629, 752
Hpy188I TCNGA 4 cut(s) 112, 384, 522, 658
Hpy188III TCNNGA 2 cut(s) 333, 598
Hpy8I GTNNAC 2 cut(s) 629, 752
HpyAV CCTTC 3 cut(s) 64, 107, 381
HpyCH4III ACNGT 2 cut(s) 235, 388
HpyCH4V TGCA 4 cut(s) 293, 434, 611, 674
HpyF10VI GCNNNNNNNGC 2 cut(s) 440, 677
HpyF3I CTNAG 2 cut(s) 178, 655
Hsp92II CATG 4 cut(s) 167, 223, 531, 545
KpnI GGTACC 1 cut(s) 309
Kzo9I GATC 2 cut(s) 88, 107
Lsp1109I GCAGC 3 cut(s) 455, 595, 658
LweI GCATC 1 cut(s) 421
MaeI CTAG 3 cut(s) 66, 333, 757
MaeIII GTNAC 1 cut(s) 614
MalI GATC 2 cut(s) 90, 109
MboI GATC 2 cut(s) 88, 107
MboII GAAGA 5 cut(s) 7, 95, 180, 204, 593
MluCI AATT 7 cut(s) 93, 137, 294, 516, 643, 694, 732
MlyI GAGTC 1 cut(s) 217
MmeI TCCRAC 1 cut(s) 300
MnlI CCTC 4 cut(s) 125, 164, 320, 349
MseI TTAA 3 cut(s) 297, 419, 515
MspA1I CMGCKG 1 cut(s) 608
MspI CCGG 1 cut(s) 555
MspR9I CCNGG 2 cut(s) 492, 556
MvaI CCWGG 1 cut(s) 492
MwoI GCNNNNNNNGC 2 cut(s) 440, 677
NciI CCSGG 1 cut(s) 556
NdeI CATATG 3 cut(s) 25, 206, 438
NdeII GATC 2 cut(s) 88, 107
NlaIII CATG 4 cut(s) 167, 223, 531, 545
NlaIV GGNNCC 1 cut(s) 307
PfeI GAWTC 1 cut(s) 150
PflMI CCANNNNNTGG 2 cut(s) 319, 638
PkrI GCNGC 3 cut(s) 445, 610, 673
PleI GAGTC 1 cut(s) 217
PpsI GAGTC 1 cut(s) 217
PshBI ATTAAT 1 cut(s) 297
Psp6I CCWGG 1 cut(s) 490
PspGI CCWGG 1 cut(s) 490
PspN4I GGNNCC 1 cut(s) 307
PstI CTGCAG 2 cut(s) 613, 676
PvuII CAGCTG 1 cut(s) 608
RsaI GTAC 1 cut(s) 307
RsaNI GTAC 1 cut(s) 306
SaqAI TTAA 3 cut(s) 297, 419, 515
SatI GCNGC 3 cut(s) 444, 609, 672
Sau3AI GATC 2 cut(s) 88, 107
SchI GAGTC 1 cut(s) 217
ScrFI CCNGG 2 cut(s) 492, 556
SetI ASST 9 cut(s) 118, 179, 360, 373, 464, 569, 610, 616, 656
SfaNI GCATC 1 cut(s) 421
SfcI CTRYAG 2 cut(s) 609, 672
SmlI CTYRAG 1 cut(s) 395
SmoI CTYRAG 1 cut(s) 395
Sse9I AATT 7 cut(s) 93, 137, 294, 516, 643, 694, 732
SspMI CTAG 3 cut(s) 66, 333, 757
StyD4I CCNGG 2 cut(s) 490, 554
StyI CCWWGG 1 cut(s) 227
TaaI ACNGT 2 cut(s) 235, 388
TaqI TCGA 1 cut(s) 360
TasI AATT 7 cut(s) 93, 137, 294, 516, 643, 694, 732
TfiI GAWTC 1 cut(s) 150
Tru1I TTAA 3 cut(s) 297, 419, 515
Tru9I TTAA 3 cut(s) 297, 419, 515
TscAI CASTG 2 cut(s) 286, 393
TseI GCWGC 3 cut(s) 443, 608, 671
TspDTI ATGAA 6 cut(s) 42, 475, 516, 594, 675, 702
TspRI CASTG 2 cut(s) 286, 393
Van91I CCANNNNNTGG 2 cut(s) 319, 638
VspI ATTAAT 1 cut(s) 297
XapI RAATTY 3 cut(s) 137, 694, 732
XbaI TCTAGA 1 cut(s) 332
XspI CTAG 3 cut(s) 66, 333, 757
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.