FvH4_6g44245

PAN-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000412
Physical Location & Seq
Reverse (-)
34110269 .. 34115124
4856 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g44245.t1

Sequence Viewer

Length: 3096 bp
ATGGTATCATCAGTCTTCTTCTTGTATGCAGTACTATTGTTTTTCTGTAATGATTACCTGCTTTGTTCAGCTAGAGATACATTGACACACGCTGATCCAGTTATTGATGACGGATCATCAGCAACTCTTGTTTCAGCAGGAGGAACATTTGAACTGGGTTTCTTTACCCCTCGTCCTACTGGGAAAAATAACTCGGGCGCTGATGGCAGGTTTGTTGGCATATGGTATCACAGATTGACTCCAATGACAGTTGTATGGATTGCCAACCGAGAACATCCACTACCTGCCAATACCACTGGACGTCTTACAATTGAAGAAGGTAGCCTCCGCCTGTTGGGTAGTTTTGGAGAGAAATATTGGTCAACAGACTTTGTATCATCATCTGTTAACATGATTGTGAAGTTAATGGAGACTGGAAACCTGGTGTTAATGGACTCTGATCAGATGGCAGCAAATACTCTGTGGCAGAGCTTTCAAAACCCGACTGATACATTCATTCCTGGGATGCTAATGGATAAAAGCTTTAAGTTGACTTCTTGGAGAAACGAAAGCGACCCTGGACTTGGGAACTTCATCTTCAAATATGAGAAGCAGTATATCATCTTAAAGAAATCGGTTCCTTACTGGAAAAGTGGAGAGCCAGGTAATGAGTTCAGCTCAAATGAAATGAGTCCTGAAGTAGCTTACTTGCTATCAAATTTCAGCAGCACTGATACAAGTAGACAGTCTACTTATCATAATTTTACTATTGTGCGACATTGGAATTTCAGTTATACACGGCTGGTGATGAATTCTACTGGAAAGTTACAGTTTTTGACTTGGAATGAGAACAAGAAGTATTGGCTTGTTTCGTGGTCGGAGCCAAAAGATCAGTGTAGTGTGTTTAAACCTTGTGGAAACTTTGGCAGCTGTAATATTAATAATTGGCCTTTGGTATGCAAATGTTTGCCCGGTTTCAGGCCTCAGTCCCCTGAGGATTGGAGTTCTAGAGATTTTTCAGGTGGATGTTATAGAGAGTCGACATTGTCTAACAACCACAGCACATTCTTGAGCTTAAAGATGATGAAAGTTAGAGAGGCAGACTTGCAGTCCAATGTGGGTAATGAACCAGAATGCAGCAAGGTTTGTCTAGAGAACACCCAGTGCCAGGCTTACTCGTATGCCGTTCTACCTGAAAACAGCGGTCAAAGAGGTACTACTACCACCACTAGCAATTCCTCATGCTGGACATGGTTCGAAGATCTAAATAATCTTGTAGAAGAGTATAACGGTGGCCACAATGTCTCTGTTCGAGTTGCCTCATCTGATATAGAATCTACTGTAAGAGACTGTAAGCCTTGTGGCACAACGATGATACCTTATCCCCTAAGCACCGGACCGGATTGTGGTGACCCCATGTACTTCCATTTCAACTGCAACACTTTGACAGGCCAGGTTAGCTTCATGGAGCCGAATGACGCCTTTAGAGTTATAAGCATCACTCCGAGTACGCAAAAATTTGTACTCCAAGGATTGCCAGCCAAAAAGCTAGATAGTTGTGATTCTAGAAGCAGAGCTAAAACTCTACCGCTCAACCCATCGTCACGGTTTAAAATAAGTAGTTGGTGCAATGCAGACCTCGGAAACATTAGTTCTGAAGTATTATCTTCTGGAGTTCTTGATGTAGTAGAGTTGAGTTGGGACCTACCGCTGGAACCAGCCTGCAATACATCAGAAGATTGCAAGGGTTGGCCAAATTCAACCTGCAATATTATTCCAGAGAAAGATGCAACAAAAAGATGCCGTTGCAACAAGAGTTTTCAATGGAATGCCTATAACTTCAGCTGTACTCAAGAAGGTAGTCTTCAGCTGGAGCCATCAAACCATCCATCGCAATCGTCCTCAGGAGAGGATTCAGACAGAAAAGTTCCATTCTATTTGATTATTGTGGTGGTGCTTATAGGCATGATTTTACTGGCATGTATCATTTCTATTTATATATGGAGAAGAAAACTGACCAGTAAACAAGATCAAGTATGTCGTGCACAGTTTGATAGTGAAAGACGAGTCAAAGAGTTGATAGACACCAGTGAGTTCAACAAAGAAGATGAGAAAGGTATAGATGTACCTTTTTTTGATTTTCAAAGCATACTAGAAGCTACAGATAATTTCTCAGAGGCTAACAAGCTTGGACAAGGGGGATATGGGCCTGTTTACAAGGGGAAGTTTCATGGAGGTCAAGAAATTGCGGTAAAGAGGCTATCAAAGGTTTCTGGACAAGGGTTACAGGAATTTAGGAATGAGGTTGTGCTGATTGCCAAACTTCAACACCGAAATCTTGTTAGACTCAGAGGATACTGCATCAAAGGAGAAGAAAAGATTCTTCTCTATGAGTACATGCCCAACAAAAGCTTAGATTCCTTTATATTTGATTATACACAAAGGGTGTTTCTCAATTGGGAGATGCGGTATAACATTATTTTGGGAATTGCTCGAGGACTTCTTTATCTTCATCAAGATTCCAGGTTGAGGATCGTTCATAGAGATTTGAAAACCAGCAATGTGCTTTTGGATGAGGAGATGAACCCCAAAATATCCGACTTTGGCTTGGCCAGGATTGTTGGAGGCAAAGAAACCGAGGCAAACACAAATACAGTTGTAGGAACCTATGGCTACATGTCTCCGGAATATGCGTTGGATGGAACTTTCTCAATCAAATCAGATGTCTTTAGTTTCGGTGTGGTTCTTCTTGAGATAATCAGTGGAAGAAAGAATGCAGGATTTTATCAGTCCAACCAAACTTTCAGCCTCATTTGTTATGCCTGGGAACTCTGGACAGAAGACAAGGTGTTGGATTTAATGGACAAGAATTTGCAAGAAAGTTGTAACAGAAGTGAATTTATAAAGTGTGTAAATGTTGGGCTATTATGCGTACAAGAAGATCCCGTTGATCGCCCTACAATGTCAAATGTTATTACCTTGCTTGACAGTGAAACTGCAGTCCCTGCAACTCCTAAACAACCAGCCTTTTTCGTAAGGAGAGGCAGCTCTAGCACAGCTTCCACTTCTACTAAGCCAGAAACAATTTCTGAAATAACTACTCTGGAAGGTAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

1032

Amino Acids

116.11

Weight (kDa)

5.64

Isoelectric Point (pI)

45.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 83 - 176 3.2e-23 D-mannose binding lectin
S_locus_glycop PF00954 209 - 322 4.3e-22 S-locus glycoprotein domain
PAN_2 PF08276 344 - 417 3e-07 PAN-like domain
Pkinase PF00069 718 - 985 2.4e-45 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 720 - 986 2.4e-47 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000412)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03230 AT4G03230 AT4G03230 AT4G03230 AT4G03230 AT4G03230 AT4G03230 AT4G03230
fragaria_vesca FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44244 FvH4_6g44245 FvH4_6g44245 FvH4_6g44260
malus_domestica MD04G1084700.v1.1 MD09G1099700.v1.1 MD09G1099800.v1.1 MD09G1099900.v1.1 MD09G1100000.v1.1 MD09G1100100.v1.1 MD17G1087900.v1.1
prunus_persica Prupe.3G226000_v2.0.a1 Prupe.3G226200_v2.0.a1 Prupe.3G226300_v2.0.a1 Prupe.3G226300_v2.0.a1 Prupe.3G226600_v2.0.a1 Prupe.3G226700_v2.0.a1
pyrus_communis pycom02g23070 pycom07g15320 pycom09g02310 pycom09g02330 pycom09g02340 pycom09g02350 pycom09g02360 pycom09g02400 pycom09g02410 pycom09g02430 pycom10g07020 pycom17g08490
rosa_chinensis RchiOBHm_Chr1g0328701 RchiOBHm_Chr2g0161021 RchiOBHm_Chr2g0161031 RchiOBHm_Chr2g0161081 RchiOBHm_Chr2g0161101
rosa_laevigata RLG00000021249 RLG00000021250 RLG00000021251 RLG00000021253 RLG00000021257 RLG00000029922
rosa_multiflora Rmu_sc0000955.1_g000023 Rmu_sc0000955.1_g000025 Rmu_sc0000955.1_g000041 Rmu_sc0002312.1_g000012 Rmu_sc0002481.1_g000021 Rmu_sc0002481.1_g000026 Rmu_sc0002481.1_g000028 Rmu_sc0002481.1_g000039 Rmu_sc0006420.1_g000017
rosa_roxburghii Rroxscaffold_2G00089160 Rroxscaffold_2G00089200 Rroxscaffold_2G00089220 Rroxscaffold_2G00089270 Rroxscaffold_2G00089300 Rroxscaffold_4G00321430
rosa_rugosa Rorug02G0485900 Rorug02G0486100 Rorug03G0345100
rosa_samantha Rh1AG094100 Rh1DG097200 Rh2AG552000 Rh2AG552100 Rh2AG552200 Rh2AG552300 Rh2AG552500 Rh2BG566400 Rh2BG566500 Rh2CG535800 Rh2CG535900 Rh2CG536100 Rh2CG536200 Rh2DG575000 Rh2DG575100 Rh2DG575400 Rh2DG575500 Rh2DG575600 Rh4AG077200 Rh4CG082400
rosa_wichuraiana Rw2G045690 Rw2G045700 Rw2G045710 Rw4G006230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1472, 2882
AatII GACGTC 1 cut(s) 304
Acc36I ACCTGC 4 cut(s) 66, 198, 292, 1751
AccBSI CCGCTC 1 cut(s) 1570
AccI GTMKAC 3 cut(s) 721, 728, 1019
AccIII TCCGGA 1 cut(s) 2662
AciI CCGC 6 cut(s) 328, 1182, 1568, 1688, 2228, 2446
AclWI GGATC 4 cut(s) 89, 121, 2519, 2915
AcoI YGGCCR 3 cut(s) 1273, 1730, 2589
AcsI RAATTY 8 cut(s) 697, 763, 790, 1496, 1735, 2270, 2848, 2876
AcuI CTGAAG 4 cut(s) 696, 1656, 1804, 1829
AcyI GRCGYC 2 cut(s) 301, 1458
AdeI CACNNNGTG 1 cut(s) 1143
AfaI GTAC 9 cut(s) 33, 1195, 1400, 1489, 1503, 1828, 2106, 2375, 2913
AfiI CCNNNNNNNGG 8 cut(s) 334, 563, 957, 1147, 1224, 1385, 1690, 2508
AflIII ACRYGT 1 cut(s) 2655
AhdI GACNNNNNGTC 1 cut(s) 1087
AjnI CCWGG 9 cut(s) 420, 499, 556, 640, 1146, 1431, 2501, 2591, 2801
AjuI GAANNNNNNNTTGG 2 cut(s) 2765, 2797
Alw21I GWGCWC 1 cut(s) 2026
Alw26I GTCTC 4 cut(s) 404, 1288, 1320, 2664
Alw44I GTGCAC 1 cut(s) 2022
AlwI GGATC 4 cut(s) 89, 121, 2519, 2915
AlwNI CAGNNNCTG 1 cut(s) 2984
Ama87I CYCGRG 2 cut(s) 193, 2472
Aor13HI TCCGGA 1 cut(s) 2662
AoxI GGCC 7 cut(s) 926, 959, 1273, 1429, 1730, 2186, 2589
ApaLI GTGCAC 1 cut(s) 2022
ApeKI GCWGC 5 cut(s) 449, 705, 906, 1116, 3024
ApoI RAATTY 8 cut(s) 697, 763, 790, 1496, 1735, 2270, 2848, 2876
ArsI GACNNNNNNTTYG 2 cut(s) 2688, 2720
AseI ATTAAT 1 cut(s) 918
Asp700I GAANNNNTTC 1 cut(s) 2358
AspLEI GCGC 1 cut(s) 200
AspS9I GGNCC 3 cut(s) 1376, 1681, 2186
AsuC2I CCSGG 1 cut(s) 951
AsuHPI GGTGA 2 cut(s) 796, 1400
AsuII TTCGAA 1 cut(s) 1236
AvaI CYCGRG 2 cut(s) 193, 2472
AvaII GGWCC 2 cut(s) 1376, 1681
AxyI CCTNAGG 2 cut(s) 972, 1882
BaeGI GKGCMC 1 cut(s) 2026
BalI TGGCCA 3 cut(s) 1275, 1732, 2591
BbsI GAAGAC 3 cut(s) 7, 1835, 2826
Bbv12I GWGCWC 1 cut(s) 2026
BbvI GCAGC 5 cut(s) 461, 717, 918, 1128, 3036
BccI CCATC 7 cut(s) 197, 439, 1585, 1864, 1872, 1876, 2672
BceAI ACGGC 3 cut(s) 794, 1148, 1767
BciT130I CCWGG 9 cut(s) 422, 501, 558, 642, 1148, 1433, 2503, 2593, 2803
BciVI GTATCC 1 cut(s) 2327
BclI TGATCA 1 cut(s) 439
BcnI CCSGG 1 cut(s) 951
BcoDI GTCTC 4 cut(s) 404, 1288, 1320, 2664
BfaI CTAG 8 cut(s) 72, 987, 1130, 1209, 1529, 1545, 2132, 3030
BfmI CTRYAG 2 cut(s) 2139, 2976
BfoI RGCGCY 1 cut(s) 201
BfuAI ACCTGC 4 cut(s) 66, 198, 292, 1751
BfuI GTATCC 1 cut(s) 2327
BglII AGATCT 1 cut(s) 1240
BisI GCNGC 5 cut(s) 450, 706, 907, 1117, 3025
BlsI GCNGC 5 cut(s) 451, 707, 908, 1118, 3026
BmcAI AGTACT 1 cut(s) 33
Bme18I GGWCC 2 cut(s) 1376, 1681
BmeRI GACNNNNNGTC 1 cut(s) 1087
BmeT110I CYCGRG 2 cut(s) 193, 2472
BmgT120I GGNCC 3 cut(s) 1376, 1681, 2186
BmiI GGNNCC 7 cut(s) 618, 861, 1449, 1682, 1695, 1854, 2644
BmrI ACTGGG 3 cut(s) 164, 189, 1135
BmsI GCATC 6 cut(s) 495, 1485, 1756, 1769, 2349, 2433
BmuI ACTGGG 3 cut(s) 164, 189, 1135
BpiI GAAGAC 3 cut(s) 7, 1835, 2826
BplI GAGNNNNNCTC 2 cut(s) 641, 673
BpmI CTGGAG 2 cut(s) 1671, 1871
Bpu10I CCTNAGC 1 cut(s) 1367
Bpu14I TTCGAA 1 cut(s) 1236
BpuEI CTTGAG 3 cut(s) 1069, 1815, 2750
BpuMI CCSGG 1 cut(s) 951
BsaHI GRCGYC 2 cut(s) 301, 1458
BsaJI CCNNGG 6 cut(s) 500, 556, 1507, 1618, 2616, 2802
BsaWI WCCGGW 3 cut(s) 1373, 1378, 2662
BsaXI ACNNNNNCTCC 2 cut(s) 2432, 2462
Bsc4I CCNNNNNNNGG 8 cut(s) 334, 563, 957, 1147, 1224, 1385, 1690, 2508
Bse21I CCTNAGG 2 cut(s) 972, 1882
Bse3DI GCAATG 2 cut(s) 1615, 2545
BseAI TCCGGA 1 cut(s) 2662
BseBI CCWGG 9 cut(s) 422, 501, 558, 642, 1148, 1433, 2503, 2593, 2803
BseDI CCNNGG 6 cut(s) 500, 556, 1507, 1618, 2616, 2802
BseGI GGATG 6 cut(s) 274, 510, 1010, 1864, 2557, 2683
BseLI CCNNNNNNNGG 8 cut(s) 334, 563, 957, 1147, 1224, 1385, 1690, 2508
BseMI GCAATG 2 cut(s) 1615, 2545
BseMII CTCAG 5 cut(s) 963, 977, 1896, 2166, 2341
BseRI GAGGAG 1 cut(s) 2570
BseSI GKGCMC 1 cut(s) 2026
BseXI GCAGC 5 cut(s) 461, 717, 918, 1128, 3036
BshFI GGCC 7 cut(s) 928, 961, 1275, 1431, 1732, 2188, 2591
BsiHKAI GWGCWC 1 cut(s) 2026
BsiHKCI CYCGRG 2 cut(s) 193, 2472
BsiSI CCGG 4 cut(s) 951, 1374, 1379, 2663
BslFI GGGAC 3 cut(s) 952, 1694, 2966
BslI CCNNNNNNNGG 8 cut(s) 334, 563, 957, 1147, 1224, 1385, 1690, 2508
BsmAI GTCTC 4 cut(s) 404, 1288, 1320, 2664
BsmFI GGGAC 3 cut(s) 952, 1694, 2966
BsmI GAATGC 3 cut(s) 1118, 1813, 2758
BsnI GGCC 7 cut(s) 928, 961, 1275, 1431, 1732, 2188, 2591
BsoBI CYCGRG 2 cut(s) 193, 2472
Bsp119I TTCGAA 1 cut(s) 1236
Bsp1286I GDGCHC 1 cut(s) 2026
Bsp13I TCCGGA 1 cut(s) 2662
Bsp143I GATC 9 cut(s) 94, 113, 439, 868, 1240, 2008, 2511, 2920, 2929
BspACI CCGC 6 cut(s) 328, 1182, 1568, 1688, 2228, 2446
BspANI GGCC 7 cut(s) 928, 961, 1275, 1431, 1732, 2188, 2591
BspCNI CTCAG 5 cut(s) 964, 976, 1895, 2165, 2340
BspEI TCCGGA 1 cut(s) 2662
BspLI GGNNCC 7 cut(s) 618, 861, 1449, 1682, 1695, 1854, 2644
BspMAI CTGCAG 1 cut(s) 2980
BspMI ACCTGC 4 cut(s) 66, 198, 292, 1751
BspPI GGATC 4 cut(s) 89, 121, 2519, 2915
BspT104I TTCGAA 1 cut(s) 1236
BsrBI CCGCTC 1 cut(s) 1570
BsrDI GCAATG 2 cut(s) 1615, 2545
BssECI CCNNGG 6 cut(s) 500, 556, 1507, 1618, 2616, 2802
BssMI GATC 9 cut(s) 94, 113, 439, 868, 1240, 2008, 2511, 2920, 2929
BssNI GRCGYC 2 cut(s) 301, 1458
BssT1I CCWWGG 1 cut(s) 1507
Bst2UI CCWGG 9 cut(s) 422, 501, 558, 642, 1148, 1433, 2503, 2593, 2803
Bst6I CTCTTC 1 cut(s) 1254
BstACI GRCGYC 2 cut(s) 301, 1458
BstAPI GCANNNNNTGC 1 cut(s) 2984
BstBI TTCGAA 1 cut(s) 1236
BstC8I GCNNGC 2 cut(s) 1518, 1702
BstDEI CTNAG 8 cut(s) 963, 972, 1367, 1882, 2152, 2327, 2392, 3051
BstEII GGTNACC 1 cut(s) 1388
BstF5I GGATG 6 cut(s) 274, 510, 1010, 1864, 2557, 2683
BstH2I RGCGCY 1 cut(s) 201
BstHHI GCGC 1 cut(s) 200
BstKTI GATC 9 cut(s) 97, 116, 442, 871, 1243, 2011, 2514, 2923, 2932
BstMAI GTCTC 4 cut(s) 404, 1288, 1320, 2664
BstMBI GATC 9 cut(s) 94, 113, 439, 868, 1240, 2008, 2511, 2920, 2929
BstMWI GCNNNNNNNGC 4 cut(s) 204, 1437, 2984, 3030
BstNI CCWGG 9 cut(s) 422, 501, 558, 642, 1148, 1433, 2503, 2593, 2803
BstNSI RCATGY 3 cut(s) 1962, 2380, 2659
BstPI GGTNACC 1 cut(s) 1388
BstSFI CTRYAG 2 cut(s) 2139, 2976
BstSLI GKGCMC 1 cut(s) 2026
BstV1I GCAGC 5 cut(s) 461, 717, 918, 1128, 3036
BstV2I GAAGAC 3 cut(s) 7, 1835, 2826
BstX2I RGATCY 2 cut(s) 1240, 2920
BstYI RGATCY 2 cut(s) 1240, 2920
Bsu36I CCTNAGG 2 cut(s) 972, 1882
BsuI GTATCC 1 cut(s) 2327
BsuRI GGCC 7 cut(s) 928, 961, 1275, 1431, 1732, 2188, 2591
BtgZI GCGATG 1 cut(s) 1854
BtsCI GGATG 6 cut(s) 274, 510, 1010, 1864, 2557, 2683
BtsIMutI CAGTG 7 cut(s) 294, 708, 878, 1148, 2074, 2746, 2974
BveI ACCTGC 4 cut(s) 66, 198, 292, 1751
Cac8I GCNNGC 2 cut(s) 1518, 1702
CaiI CAGNNNCTG 1 cut(s) 2984
CfoI GCGC 1 cut(s) 200
Cfr13I GGNCC 3 cut(s) 1376, 1681, 2186
CpoI CGGWCCG 1 cut(s) 1376
CseI GACGC 1 cut(s) 1466
CsiI ACCWGGT 1 cut(s) 420
Csp6I GTAC 9 cut(s) 32, 1194, 1399, 1488, 1502, 1827, 2105, 2374, 2912
CspI CGGWCCG 1 cut(s) 1376
CviQI GTAC 9 cut(s) 32, 1194, 1399, 1488, 1502, 1827, 2105, 2374, 2912
DdeI CTNAG 8 cut(s) 963, 972, 1367, 1882, 2152, 2327, 2392, 3051
DpnI GATC 9 cut(s) 96, 115, 441, 870, 1242, 2010, 2513, 2922, 2931
DpnII GATC 9 cut(s) 94, 113, 439, 868, 1240, 2008, 2511, 2920, 2929
DraI TTTAAA 2 cut(s) 886, 1591
DraIII CACNNNGTG 1 cut(s) 1143
DriI GACNNNNNGTC 1 cut(s) 1087
EaeI YGGCCR 3 cut(s) 1273, 1730, 2589
Eam1104I CTCTTC 1 cut(s) 1254
Eam1105I GACNNNNNGTC 1 cut(s) 1087
EarI CTCTTC 1 cut(s) 1254
EciI GGCGGA 1 cut(s) 317
Eco130I CCWWGG 1 cut(s) 1507
Eco147I AGGCCT 1 cut(s) 961
Eco47I GGWCC 2 cut(s) 1376, 1681
Eco57I CTGAAG 4 cut(s) 696, 1656, 1804, 1829
Eco81I CCTNAGG 2 cut(s) 972, 1882
Eco88I CYCGRG 2 cut(s) 193, 2472
Eco91I GGTNACC 1 cut(s) 1388
EcoO109I RGGNCCY 1 cut(s) 1681
EcoO65I GGTNACC 1 cut(s) 1388
EcoRI GAATTC 1 cut(s) 790
EcoRII CCWGG 9 cut(s) 420, 499, 556, 640, 1146, 1431, 2501, 2591, 2801
EcoT14I CCWWGG 1 cut(s) 1507
ErhI CCWWGG 1 cut(s) 1507
FalI AAGNNNNNCTT 2 cut(s) 1827, 1859
FaqI GGGAC 3 cut(s) 952, 1694, 2966
FauNDI CATATG 1 cut(s) 221
FbaI TGATCA 1 cut(s) 439
FblI GTMKAC 3 cut(s) 721, 728, 1019
Fnu4HI GCNGC 5 cut(s) 450, 706, 907, 1117, 3025
FokI GGATG 6 cut(s) 261, 517, 1017, 1851, 2564, 2690
Fsp4HI GCNGC 5 cut(s) 450, 706, 907, 1117, 3025
FspBI CTAG 8 cut(s) 72, 987, 1130, 1209, 1529, 1545, 2132, 3030
GlaI GCGC 1 cut(s) 199
GluI GCNGC 5 cut(s) 450, 706, 907, 1117, 3025
GsuI CTGGAG 2 cut(s) 1671, 1871
HaeII RGCGCY 1 cut(s) 201
HaeIII GGCC 7 cut(s) 928, 961, 1275, 1431, 1732, 2188, 2591
HapII CCGG 4 cut(s) 951, 1374, 1379, 2663
HgaI GACGC 1 cut(s) 1466
HhaI GCGC 1 cut(s) 200
Hin1I GRCGYC 2 cut(s) 301, 1458
Hin6I GCGC 1 cut(s) 198
HinP1I GCGC 1 cut(s) 198
HincII GTYRAC 4 cut(s) 363, 388, 531, 1020
HindII GTYRAC 4 cut(s) 363, 388, 531, 1020
HindIII AAGCTT 3 cut(s) 520, 2165, 2389
HpaI GTTAAC 1 cut(s) 388
HpaII CCGG 4 cut(s) 951, 1374, 1379, 2663
HphI GGTGA 2 cut(s) 796, 1400
Hpy166II GTNNAC 9 cut(s) 363, 388, 531, 722, 729, 1020, 2003, 2024, 2194
Hpy8I GTNNAC 9 cut(s) 363, 388, 531, 722, 729, 1020, 2003, 2024, 2194
HpyAV CCTTC 3 cut(s) 311, 1829, 3080
HpyCH4IV ACGT 1 cut(s) 301
HpyF10VI GCNNNNNNNGC 4 cut(s) 204, 1437, 2984, 3030
HpyF3I CTNAG 8 cut(s) 963, 972, 1367, 1882, 2152, 2327, 2392, 3051
HpySE526I ACGT 1 cut(s) 301
Hsp92I GRCGYC 2 cut(s) 301, 1458
HspAI GCGC 1 cut(s) 198
Kpn2I TCCGGA 1 cut(s) 2662
Ksp22I TGATCA 1 cut(s) 439
KspAI GTTAAC 1 cut(s) 388
Kzo9I GATC 9 cut(s) 94, 113, 439, 868, 1240, 2008, 2511, 2920, 2929
LmnI GCTCC 3 cut(s) 859, 1447, 1852
Lsp1109I GCAGC 5 cut(s) 461, 717, 918, 1128, 3036
LweI GCATC 6 cut(s) 495, 1485, 1756, 1769, 2349, 2433
MabI ACCWGGT 1 cut(s) 420
MaeI CTAG 8 cut(s) 72, 987, 1130, 1209, 1529, 1545, 2132, 3030
MaeII ACGT 1 cut(s) 301
MaeIII GTNAC 5 cut(s) 804, 1388, 1581, 2262, 2864
MalI GATC 9 cut(s) 96, 115, 441, 870, 1242, 2010, 2513, 2922, 2931
MbiI CCGCTC 1 cut(s) 1570
MboI GATC 9 cut(s) 94, 113, 439, 868, 1240, 2008, 2511, 2920, 2929
MfeI CAATTG 2 cut(s) 309, 2434
MflI RGATCY 2 cut(s) 1240, 2920
MhlI GDGCHC 1 cut(s) 2026
MlsI TGGCCA 3 cut(s) 1275, 1732, 2591
MluNI TGGCCA 3 cut(s) 1275, 1732, 2591
MlyI GAGTC 6 cut(s) 232, 428, 679, 1025, 2055, 2319
MmeI TCCRAC 6 cut(s) 837, 2581, 2601, 2655, 2796, 2811
Mox20I TGGCCA 3 cut(s) 1275, 1732, 2591
MroI TCCGGA 1 cut(s) 2662
MroXI GAANNNNTTC 1 cut(s) 2358
MscI TGGCCA 3 cut(s) 1275, 1732, 2591
MslI CAYNNNNRTG 2 cut(s) 395, 1349
Msp20I TGGCCA 3 cut(s) 1275, 1732, 2591
MspA1I CMGCKG 5 cut(s) 909, 1182, 1690, 1824, 1849
MspI CCGG 4 cut(s) 951, 1374, 1379, 2663
MssI GTTTAAAC 1 cut(s) 886
MunI CAATTG 2 cut(s) 309, 2434
Mva1269I GAATGC 3 cut(s) 1118, 1813, 2758
MvaI CCWGG 9 cut(s) 422, 501, 558, 642, 1148, 1433, 2503, 2593, 2803
MwoI GCNNNNNNNGC 4 cut(s) 204, 1437, 2984, 3030
NciI CCSGG 1 cut(s) 951
NdeI CATATG 1 cut(s) 221
NdeII GATC 9 cut(s) 94, 113, 439, 868, 1240, 2008, 2511, 2920, 2929
NlaIV GGNNCC 7 cut(s) 618, 861, 1449, 1682, 1695, 1854, 2644
NmuCI GTSAC 2 cut(s) 1388, 1581
NspI RCATGY 3 cut(s) 1962, 2380, 2659
NspV TTCGAA 1 cut(s) 1236
PaeR7I CTCGAG 1 cut(s) 2472
PceI AGGCCT 1 cut(s) 961
PciI ACATGT 1 cut(s) 2655
PctI GAATGC 3 cut(s) 1118, 1813, 2758
PdmI GAANNNNTTC 1 cut(s) 2358
PfeI GAWTC 6 cut(s) 1313, 1541, 1892, 2359, 2396, 2498
PflFI GACNNNGTC 1 cut(s) 1024
PkrI GCNGC 5 cut(s) 451, 707, 908, 1118, 3026
PleI GAGTC 6 cut(s) 232, 428, 678, 1024, 2054, 2319
PmeI GTTTAAAC 1 cut(s) 886
PpsI GAGTC 6 cut(s) 232, 428, 678, 1024, 2054, 2319
PpuMI RGGWCCY 1 cut(s) 1681
PscI ACATGT 1 cut(s) 2655
PshBI ATTAAT 1 cut(s) 918
PsiI TTATAA 2 cut(s) 1472, 2882
Psp5II RGGWCCY 1 cut(s) 1681
Psp6I CCWGG 9 cut(s) 420, 499, 556, 640, 1146, 1431, 2501, 2591, 2801
PspEI GGTNACC 1 cut(s) 1388
PspGI CCWGG 9 cut(s) 420, 499, 556, 640, 1146, 1431, 2501, 2591, 2801
PspN4I GGNNCC 7 cut(s) 618, 861, 1449, 1682, 1695, 1854, 2644
PspPI GGNCC 3 cut(s) 1376, 1681, 2186
PspPPI RGGWCCY 1 cut(s) 1681
PspXI VCTCGAGB 1 cut(s) 2472
PsrI GAACNNNNNNTAC 2 cut(s) 264, 296
PstI CTGCAG 1 cut(s) 2980
PstNI CAGNNNCTG 1 cut(s) 2984
PsuI RGATCY 2 cut(s) 1240, 2920
PsyI GACNNNGTC 1 cut(s) 1024
PvuII CAGCTG 3 cut(s) 909, 1824, 1849
RsaI GTAC 9 cut(s) 33, 1195, 1400, 1489, 1503, 1828, 2106, 2375, 2913
RsaNI GTAC 9 cut(s) 32, 1194, 1399, 1488, 1502, 1827, 2105, 2374, 2912
RseI CAYNNNNRTG 2 cut(s) 395, 1349
Rsr2I CGGWCCG 1 cut(s) 1376
RsrII CGGWCCG 1 cut(s) 1376
SalI GTCGAC 1 cut(s) 1018
SatI GCNGC 5 cut(s) 450, 706, 907, 1117, 3025
Sau3AI GATC 9 cut(s) 94, 113, 439, 868, 1240, 2008, 2511, 2920, 2929
Sau96I GGNCC 3 cut(s) 1376, 1681, 2186
ScaI AGTACT 1 cut(s) 33
SchI GAGTC 6 cut(s) 232, 428, 679, 1025, 2055, 2319
SduI GDGCHC 1 cut(s) 2026
SexAI ACCWGGT 1 cut(s) 420
SfaNI GCATC 6 cut(s) 495, 1485, 1756, 1769, 2349, 2433
SfcI CTRYAG 2 cut(s) 2139, 2976
Sfr274I CTCGAG 1 cut(s) 2472
SfuI TTCGAA 1 cut(s) 1236
SinI GGWCC 2 cut(s) 1376, 1681
SlaI CTCGAG 1 cut(s) 2472
SmiMI CAYNNNNRTG 2 cut(s) 395, 1349
SmlI CTYRAG 4 cut(s) 1048, 1830, 2472, 2729
SmoI CTYRAG 4 cut(s) 1048, 1830, 2472, 2729
SseBI AGGCCT 1 cut(s) 961
SsiI CCGC 6 cut(s) 328, 1182, 1568, 1688, 2228, 2446
SspI AATATT 3 cut(s) 356, 916, 1750
SspMI CTAG 8 cut(s) 72, 987, 1130, 1209, 1529, 1545, 2132, 3030
StuI AGGCCT 1 cut(s) 961
StyI CCWWGG 1 cut(s) 1507
TaiI ACGT 1 cut(s) 304
TaqI TCGA 4 cut(s) 1019, 1236, 1291, 2473
TatI WGTACW 5 cut(s) 31, 1398, 1501, 1826, 2373
TfiI GAWTC 6 cut(s) 1313, 1541, 1892, 2359, 2396, 2498
TscAI CASTG 7 cut(s) 301, 715, 878, 1148, 2074, 2746, 2974
TseFI GTSAC 2 cut(s) 1388, 1581
TseI GCWGC 5 cut(s) 449, 705, 906, 1116, 3024
Tsp45I GTSAC 2 cut(s) 1388, 1581
TspGWI ACGGA 1 cut(s) 126
TspRI CASTG 7 cut(s) 301, 715, 878, 1148, 2074, 2746, 2974
Tth111I GACNNNGTC 1 cut(s) 1024
VneI GTGCAC 1 cut(s) 2022
VpaK11BI GGWCC 2 cut(s) 1376, 1681
VspI ATTAAT 1 cut(s) 918
XapI RAATTY 8 cut(s) 697, 763, 790, 1496, 1735, 2270, 2848, 2876
XbaI TCTAGA 3 cut(s) 986, 1129, 1544
XceI RCATGY 3 cut(s) 1962, 2380, 2659
XhoI CTCGAG 1 cut(s) 2472
XmiI GTMKAC 3 cut(s) 721, 728, 1019
XmnI GAANNNNTTC 1 cut(s) 2358
XspI CTAG 8 cut(s) 72, 987, 1130, 1209, 1529, 1545, 2132, 3030
ZraI GACGTC 1 cut(s) 302
ZrmI AGTACT 1 cut(s) 33
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.