pycom10g07020

serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0000412
Physical Location & Seq
Forward (+)
8243844 .. 8244471
628 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g07020.1

Sequence Viewer

Length: 459 bp
ATGCAAGTCCTTGAGCACAAAGACAAGCAAAGCGCTGTTTTCAGTTCTTCAAGTCAACACTCTTCTTATAAAAACATAGGAATTCCTCCACAATCAGAATACAATTATACAAGCTGCAATAGTAATAATAGGCCGTTGCTGTGCAAATGTTTGCCAAGTTTCAAGCCCCAGTATCTACTGCGGTGGAATTCTGGAGACTTTTCAAGTGAATGCATAAGAGACTCTGCATTATGTGGCAACAACAAGAATGATACCTTCTTGAGCTTGAAAAAGATGAAAGTGGGAAACGCACATTCACAAATCAATGTTGAAAATGAAACAGAATGCAAGAACATGTGCTTAAATAGCTGCAAGTGCAAGGCCTATTCATATGCTAAATCTGGAGAGTATAGTATCTTCTGTCTTGAAGAACTGAAGAACACGGTGTACCTTATTAGCTCAATCTGGTTTGCTCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin GUB_WAK_bind PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

153

Amino Acids

17.28

Weight (kDa)

8.49

Isoelectric Point (pI)

59.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAN_2 PF08276 78 - 134 3.3e-10 PAN-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000412)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03230 AT4G03230 AT4G03230 AT4G03230 AT4G03230 AT4G03230 AT4G03230 AT4G03230
fragaria_vesca FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44244 FvH4_6g44245 FvH4_6g44245 FvH4_6g44260
malus_domestica MD04G1084700.v1.1 MD09G1099700.v1.1 MD09G1099800.v1.1 MD09G1099900.v1.1 MD09G1100000.v1.1 MD09G1100100.v1.1 MD17G1087900.v1.1
prunus_persica Prupe.3G226000_v2.0.a1 Prupe.3G226200_v2.0.a1 Prupe.3G226300_v2.0.a1 Prupe.3G226300_v2.0.a1 Prupe.3G226600_v2.0.a1 Prupe.3G226700_v2.0.a1
pyrus_communis pycom02g23070 pycom07g15320 pycom09g02310 pycom09g02330 pycom09g02340 pycom09g02350 pycom09g02360 pycom09g02400 pycom09g02410 pycom09g02430 pycom10g07020 pycom17g08490
rosa_chinensis RchiOBHm_Chr1g0328701 RchiOBHm_Chr2g0161021 RchiOBHm_Chr2g0161031 RchiOBHm_Chr2g0161081 RchiOBHm_Chr2g0161101
rosa_laevigata RLG00000021249 RLG00000021250 RLG00000021251 RLG00000021253 RLG00000021257 RLG00000029922
rosa_multiflora Rmu_sc0000955.1_g000023 Rmu_sc0000955.1_g000025 Rmu_sc0000955.1_g000041 Rmu_sc0002312.1_g000012 Rmu_sc0002481.1_g000021 Rmu_sc0002481.1_g000026 Rmu_sc0002481.1_g000028 Rmu_sc0002481.1_g000039 Rmu_sc0006420.1_g000017
rosa_roxburghii Rroxscaffold_2G00089160 Rroxscaffold_2G00089200 Rroxscaffold_2G00089220 Rroxscaffold_2G00089270 Rroxscaffold_2G00089300 Rroxscaffold_4G00321430
rosa_rugosa Rorug02G0485900 Rorug02G0486100 Rorug03G0345100
rosa_samantha Rh1AG094100 Rh1DG097200 Rh2AG552000 Rh2AG552100 Rh2AG552200 Rh2AG552300 Rh2AG552500 Rh2BG566400 Rh2BG566500 Rh2CG535800 Rh2CG535900 Rh2CG536100 Rh2CG536200 Rh2DG575000 Rh2DG575100 Rh2DG575400 Rh2DG575500 Rh2DG575600 Rh4AG077200 Rh4CG082400
rosa_wichuraiana Rw2G045690 Rw2G045700 Rw2G045710 Rw4G006230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 69
AciI CCGC 1 cut(s) 181
AcsI RAATTY 2 cut(s) 81, 187
AcuI CTGAAG 1 cut(s) 434
AfaI GTAC 1 cut(s) 428
AfeI AGCGCT 1 cut(s) 34
AflIII ACRYGT 1 cut(s) 333
AgsI TTSAA 6 cut(s) 51, 163, 204, 268, 311, 407
AluBI AGCT 4 cut(s) 114, 264, 348, 438
AluI AGCT 4 cut(s) 114, 264, 348, 438
Alw21I GWGCWC 1 cut(s) 18
Alw26I GTCTC 2 cut(s) 189, 213
Aor51HI AGCGCT 1 cut(s) 34
AoxI GGCC 2 cut(s) 131, 360
ApeKI GCWGC 2 cut(s) 114, 348
ApoI RAATTY 2 cut(s) 81, 187
AspLEI GCGC 1 cut(s) 35
BarI GAAGNNNNNNTAC 2 cut(s) 380, 412
Bbv12I GWGCWC 1 cut(s) 18
BbvI GCAGC 2 cut(s) 101, 335
BceAI ACGGC 1 cut(s) 118
BcoDI GTCTC 2 cut(s) 189, 213
BfoI RGCGCY 1 cut(s) 36
BisI GCNGC 2 cut(s) 115, 349
BlsI GCNGC 2 cut(s) 116, 350
BmrI ACTGGG 1 cut(s) 163
BmuI ACTGGG 1 cut(s) 163
BpmI CTGGAG 2 cut(s) 213, 402
BpuEI CTTGAG 2 cut(s) 32, 280
Bse1I ACTGG 1 cut(s) 169
BseNI ACTGG 1 cut(s) 169
BseXI GCAGC 2 cut(s) 101, 335
BshFI GGCC 2 cut(s) 133, 362
BsiHKAI GWGCWC 1 cut(s) 18
BsmAI GTCTC 2 cut(s) 189, 213
BsmI GAATGC 2 cut(s) 215, 329
BsnI GGCC 2 cut(s) 133, 362
Bsp1286I GDGCHC 1 cut(s) 18
BspACI CCGC 1 cut(s) 181
BspANI GGCC 2 cut(s) 133, 362
BsrI ACTGG 1 cut(s) 169
Bst4CI ACNGT 1 cut(s) 424
Bst6I CTCTTC 1 cut(s) 67
BstH2I RGCGCY 1 cut(s) 36
BstHHI GCGC 1 cut(s) 35
BstMAI GTCTC 2 cut(s) 189, 213
BstMWI GCNNNNNNNGC 2 cut(s) 345, 354
BstNSI RCATGY 1 cut(s) 337
BstV1I GCAGC 2 cut(s) 101, 335
BsuRI GGCC 2 cut(s) 133, 362
CfoI GCGC 1 cut(s) 35
Csp6I GTAC 1 cut(s) 427
CviAII CATG 1 cut(s) 334
CviJI RGCY 7 cut(s) 114, 133, 166, 264, 348, 362, 438
CviKI_1 RGCY 7 cut(s) 114, 133, 166, 264, 348, 362, 438
CviQI GTAC 1 cut(s) 427
Eam1104I CTCTTC 1 cut(s) 67
EarI CTCTTC 1 cut(s) 67
Eco147I AGGCCT 1 cut(s) 362
Eco47III AGCGCT 1 cut(s) 34
Eco57I CTGAAG 1 cut(s) 434
EcoRI GAATTC 2 cut(s) 81, 187
EcoT22I ATGCAT 1 cut(s) 215
FaeI CATG 1 cut(s) 337
FaiI YATR 9 cut(s) 69, 77, 108, 215, 232, 335, 370, 372, 390
FatI CATG 1 cut(s) 333
FauNDI CATATG 1 cut(s) 370
Fnu4HI GCNGC 2 cut(s) 115, 349
Fsp4HI GCNGC 2 cut(s) 115, 349
GlaI GCGC 1 cut(s) 34
GluI GCNGC 2 cut(s) 115, 349
GsuI CTGGAG 2 cut(s) 213, 402
HaeII RGCGCY 1 cut(s) 36
HaeIII GGCC 2 cut(s) 133, 362
HhaI GCGC 1 cut(s) 35
Hin1II CATG 1 cut(s) 337
Hin6I GCGC 1 cut(s) 33
HinP1I GCGC 1 cut(s) 33
HincII GTYRAC 1 cut(s) 56
HindII GTYRAC 1 cut(s) 56
HinfI GANTC 1 cut(s) 221
Hpy166II GTNNAC 2 cut(s) 56, 427
Hpy188I TCNGA 1 cut(s) 97
Hpy188III TCNNGA 4 cut(s) 192, 259, 381, 404
Hpy8I GTNNAC 2 cut(s) 56, 427
HpyAV CCTTC 1 cut(s) 265
HpyCH4III ACNGT 1 cut(s) 424
HpyCH4V TGCA 8 cut(s) 4, 117, 144, 213, 227, 327, 351, 357
HpyF10VI GCNNNNNNNGC 2 cut(s) 345, 354
Hsp92II CATG 1 cut(s) 337
HspAI GCGC 1 cut(s) 33
LpnPI CCDG 4 cut(s) 177, 182, 366, 430
Lsp1109I GCAGC 2 cut(s) 101, 335
MboII GAAGA 5 cut(s) 39, 54, 388, 419, 427
MhlI GDGCHC 1 cut(s) 18
MluCI AATT 3 cut(s) 81, 103, 187
MlyI GAGTC 1 cut(s) 215
MnlI CCTC 1 cut(s) 96
Mph1103I ATGCAT 1 cut(s) 215
MseI TTAA 1 cut(s) 341
Mva1269I GAATGC 2 cut(s) 215, 329
MwoI GCNNNNNNNGC 2 cut(s) 345, 354
NdeI CATATG 1 cut(s) 370
NlaIII CATG 1 cut(s) 337
NsiI ATGCAT 1 cut(s) 215
NspI RCATGY 1 cut(s) 337
PceI AGGCCT 1 cut(s) 362
PciI ACATGT 1 cut(s) 333
PctI GAATGC 2 cut(s) 215, 329
PkrI GCNGC 2 cut(s) 116, 350
PleI GAGTC 1 cut(s) 215
PpsI GAGTC 1 cut(s) 215
PscI ACATGT 1 cut(s) 333
PsiI TTATAA 1 cut(s) 69
PsrI GAACNNNNNNTAC 2 cut(s) 410, 442
RsaI GTAC 1 cut(s) 428
RsaNI GTAC 1 cut(s) 427
SaqAI TTAA 1 cut(s) 341
SatI GCNGC 2 cut(s) 115, 349
SchI GAGTC 1 cut(s) 215
SduI GDGCHC 1 cut(s) 18
SetI ASST 6 cut(s) 116, 257, 266, 350, 432, 440
SmlI CTYRAG 2 cut(s) 11, 259
SmoI CTYRAG 2 cut(s) 11, 259
Sse9I AATT 3 cut(s) 81, 103, 187
SseBI AGGCCT 1 cut(s) 362
SsiI CCGC 1 cut(s) 181
StuI AGGCCT 1 cut(s) 362
TaaI ACNGT 1 cut(s) 424
TasI AATT 3 cut(s) 81, 103, 187
Tru1I TTAA 1 cut(s) 341
Tru9I TTAA 1 cut(s) 341
TseI GCWGC 2 cut(s) 114, 348
TspDTI ATGAA 3 cut(s) 290, 330, 357
XapI RAATTY 2 cut(s) 81, 187
XceI RCATGY 1 cut(s) 337
Zsp2I ATGCAT 1 cut(s) 215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.