RchiOBHm_Chr2g0161021

divergent subfamily of APPLE domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000412
Physical Location & Seq
Reverse (-)
76882702 .. 76886970
4269 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ52940

Sequence Viewer

Length: 3060 bp
ATGTTCACTAACTTCTTTCTGTATTCATTCTTGTTATGCACTTTTCTTCATTGTTGCATTGCTAAAGATACAATAGCATATAACAGTTTGATTAGTGATGACAAAGGTGATACTATTGTTTCATCAGGAGAAAAATTTGAACTTGGGTTCTTTACTTCTAATGGAAGCTCTGGTACTAGAAGATATGTTGGAATTTGGTATTACAGATCGAATCCACAGACTGTTGTGTGGCTTGCAAATAGAGACAACCCTCTTTCAGATACTCGTGGAGTTTTCACTATTGCAGAAGATGGAAATCTTAAGGTGCTGGATGGCAAAAGAAAAACTTACTGGTCATCAAGTCTTGAAAGTTCATCATCAACAATTAGGACAGCAAAGCTCATGGACACTGGTAATCTTGTTGTGATCAATAGAGAGCAAGGAAACAACTCGGTTCAAATTGTCTGGCAGAGTTTTGAAAATCCAACCGACACATTTCTTCCTGGCATGAAAATGAGCGGAAAATTAGCACTGAGTTCATGGAAGAGTTACAATGATCCAGCAACAGGAAATTTCACATTTCAGCAAGACCAAGAGGATGCGAACCACTTTGTTATCTGGAAAAGATCGAGAAGGTACTGGAAGAGTGAAGATTATGGAAACTTCATTAGTTCTGATGAGATGGCTTCTGCAATTCTCTACTTGCTATCAAACTTCACCTCTACAGCAGTCCACAATGACTCTGTGCCATATCTCACATCCTCATTATACACTTCTACAAGGCTGGTTATGAGTTTTTCGGGCCAGATTCAGTATCTGATGTGGGATAGTGAGAAGGTTTGGTCTTTGATATGGGCAGATCCTAGAGATAGATGCAGTGTGTATAATGCATGTGGAAATTTTGGTAGCTGTAACAGCAAAAATGGTTTGGTTTGCAAGTGTTTGCCTGGTTTTAAGCCTAGTTCACCGGATAATTGGAATCATGGAGATTATTCGGGCGGATGCACTAGGAAGTCAACATTATGTGGCAACAATGCTGAGAGTGACATATTCTTGAGCTTAAAGATGATGAAAGTGGGAAACCCAGATTCCCAATTTAATGCCAAAAGTGAAATGGAATGCAGAGTAGAGTGCCTTAACAACTGTGAGTGTCAAGCTTATTTCTATGAAGAGGTGGAGAACAAAAACACGGGTGGGAGTAGTAGTTCAACATGTTGGATTTGGTCACAAGATGTCACCAATCTTCAGGAGGACTATGACGGTGGCCAGAATCTACAGGTTCGTGTAGCAGTTTCAGATATAGAATCAACAGCGAGAAGCTGTGGAAGTTGTGGCACAAACCTGATCCCTTATCCCTTAAGCACTGGACCAAAGTGTGGTGATGTCACCTACTATAGTTTCCACTGCAATATTTCAACTGGCCAGCTGAGCTTTGAGGCACCAAGCGGCACCTACCATGTCACAAGCATCAACGCGGACACACAAACATTTGTCATCCAAGCTAATGATGCAGATGAATGTAGAGATAAAAAATTTCTGAAGCTCATACAGTCTTCTCCATATAATGTGACAAACATGTGCAATGCTGATCCGACCCGTTTTAGTCCTGATTTGTCATTTAAAGGAGGATATGAAGTTGAAGTTGCTTGGGAGTCACCCTTGGAACCACCTTGTTCCTCATCTACAGACTGCAAGGACTGGCCTCGTTCGATATGTGATGCTGCTCTAGATGGGAAGAATAGGTGTCTTTGCCCTGCAAACTCAAAATGGGATAGCAGGAGTTTAAATTGTACTCAAGAAGTTGGCCACAGAAAGCAAACTGGTGAGCAAGGGAAGATGACCCTAGCTCTAATCATTGCAGTAACTTGTATAAGTGTAGCTGTTCTAGCAATTCTTTCAAGTACCTTTGTTTATGCTTATATATGGAGAAGAAGGCGCATTAAGACACAAGGCAGGGCAAATCTTCAAAAGTGTTCAACACTTAATCACTTTTATGACTGTGAGAGAAAAGTCAAGAACTTGATTGAATCAGGCCGATTTAAGGATGACGATACGGAGGGCATTGATGTACCCTCTTTTGATTTGGAAAGCATACTGGTAGCTACAACATACTTCTCCAATGCAAATAAACTTGGACAAGGAGGATTTGGTCCTGTTTACAAGGGTAAGCTTCCGGGAGGAGAAGAAATCGCTGTAAAGAGGCTCTCGAGTTGTTCAGGCCAAGGCCTAGAGGAATTCAAAAATGAAGTTTTGTTAATTGCCAAACTTCAACATCGGAATCTGGTTCGACTTTTGGGCTATTGTGCTGAGGGAGATGAAAAGATGTTAATCTATGAATACATGGCCAACAAAAGCTTAGACTCTTTCATCTTTGATCGAAAAGTATGTGTATCATTGGACTGGAATACACGCTTTAACATCATCTTAGGAATTGCTCGGGGGCTTCTTTATCTTCACCAAGATTCTAGATTAAGGGTTATTCATAGAGATCTGAAAACCAGCAACATTCTACTGAGTGAAGAGATGAACCCCAAAATATCAGACTTCGGTTTGGCAAGGATCTTTGGAGGCAATGAAACTTCAGCAAACACCAATAGAGTAGTGGGAACATACGGCTATATGTCTCCAGAGTATGCATTAGATGGGTTATTCTCAGTAAAATCTGATGTTTTTAGCTTTGGTGTAGTTGTGATTGAAATCATCACTGGGAAAAGGAACACAGGATTTTATCAGCCTGAAAGATCTTTGAGTCTTCTTGGCTATGCATGGCATTTGTGGAAAGAACAAAAGGCGTTAGATTTGCTAGAACAAACACTTGGTCACAGCTGCAACAAGGATGAGTACTTCAAGTGTGTTAATGTTGGGCTCTTATGTGTACAAGAAGATCCAGGTGATCGGCCAACCATGTCACAAGTAGTTTTCATGCTCGGAAGTGAAACTGCAACGATTCCAACCCCTAAACAACCCGCTTTCGTTGTTAGGCGATGCCCTTCTAGTTCTAGCAGGGCTTCTAATTCTTCAAGCAAACCAGAAACGGTTTCAAACAATGAGTTAACTGTCACCTTAGAAGATGGTCGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin GUB_WAK_bind PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

1019

Amino Acids

113.87

Weight (kDa)

5.95

Isoelectric Point (pI)

46.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 74 - 168 1.2e-29 D-mannose binding lectin
S_locus_glycop PF00954 214 - 314 1.9e-22 S-locus glycoprotein domain
PAN_2 PF08276 338 - 407 2.2e-10 PAN-like domain
GUB_WAK_bind PF13947 435 - 492 3e-06 Wall-associated receptor kinase galacturonan-binding
Pkinase PF00069 699 - 965 6.7e-43 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 701 - 967 2.1e-48 Protein tyrosine and serine/threonine kinase
DUF3403 PF11883 971 - 1019 3.6e-07 Domain of unknown function (DUF3403)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000412)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03230 AT4G03230 AT4G03230 AT4G03230 AT4G03230 AT4G03230 AT4G03230 AT4G03230
fragaria_vesca FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44244 FvH4_6g44245 FvH4_6g44245 FvH4_6g44260
malus_domestica MD04G1084700.v1.1 MD09G1099700.v1.1 MD09G1099800.v1.1 MD09G1099900.v1.1 MD09G1100000.v1.1 MD09G1100100.v1.1 MD17G1087900.v1.1
prunus_persica Prupe.3G226000_v2.0.a1 Prupe.3G226200_v2.0.a1 Prupe.3G226300_v2.0.a1 Prupe.3G226300_v2.0.a1 Prupe.3G226600_v2.0.a1 Prupe.3G226700_v2.0.a1
pyrus_communis pycom02g23070 pycom07g15320 pycom09g02310 pycom09g02330 pycom09g02340 pycom09g02350 pycom09g02360 pycom09g02400 pycom09g02410 pycom09g02430 pycom10g07020 pycom17g08490
rosa_chinensis RchiOBHm_Chr1g0328701 RchiOBHm_Chr2g0161021 RchiOBHm_Chr2g0161031 RchiOBHm_Chr2g0161081 RchiOBHm_Chr2g0161101
rosa_laevigata RLG00000021249 RLG00000021250 RLG00000021251 RLG00000021253 RLG00000021257 RLG00000029922
rosa_multiflora Rmu_sc0000955.1_g000023 Rmu_sc0000955.1_g000025 Rmu_sc0000955.1_g000041 Rmu_sc0002312.1_g000012 Rmu_sc0002481.1_g000021 Rmu_sc0002481.1_g000026 Rmu_sc0002481.1_g000028 Rmu_sc0002481.1_g000039 Rmu_sc0006420.1_g000017
rosa_roxburghii Rroxscaffold_2G00089160 Rroxscaffold_2G00089200 Rroxscaffold_2G00089220 Rroxscaffold_2G00089270 Rroxscaffold_2G00089300 Rroxscaffold_4G00321430
rosa_rugosa Rorug02G0485900 Rorug02G0486100 Rorug03G0345100
rosa_samantha Rh1AG094100 Rh1DG097200 Rh2AG552000 Rh2AG552100 Rh2AG552200 Rh2AG552300 Rh2AG552500 Rh2BG566400 Rh2BG566500 Rh2CG535800 Rh2CG535900 Rh2CG536100 Rh2CG536200 Rh2DG575000 Rh2DG575100 Rh2DG575400 Rh2DG575500 Rh2DG575600 Rh4AG077200 Rh4CG082400
rosa_wichuraiana Rw2G045690 Rw2G045700 Rw2G045710 Rw4G006230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 1417, 1427
AccB7I CCANNNNNTGG 1 cut(s) 1355
AccBSI CCGCTC 1 cut(s) 498
AccII CGCG 1 cut(s) 1454
AciI CCGC 5 cut(s) 498, 978, 1425, 1454, 2946
AclWI GGATC 6 cut(s) 530, 833, 1318, 1562, 2546, 2858
AcoI YGGCCR 5 cut(s) 1243, 1399, 1783, 2322, 2876
AcsI RAATTY 6 cut(s) 134, 192, 550, 877, 1511, 2213
AcuI CTGAAG 3 cut(s) 1208, 1538, 2544
AfaI GTAC 7 cut(s) 175, 617, 1771, 1882, 2049, 2822, 2856
AfiI CCNNNNNNNGG 3 cut(s) 545, 1355, 2020
AflII CTTAAG 2 cut(s) 299, 1336
AflIII ACRYGT 2 cut(s) 1190, 1554
AjnI CCWGG 3 cut(s) 481, 925, 2866
AjuI GAANNNNNNNTTGG 2 cut(s) 2778, 2810
AloI GAACNNNNNNTCC 2 cut(s) 1168, 1200
Alw26I GTCTC 2 cut(s) 237, 2607
AlwI GGATC 6 cut(s) 530, 833, 1318, 1562, 2546, 2858
AlwNI CAGNNNCTG 1 cut(s) 796
Ama87I CYCGRG 2 cut(s) 2185, 2415
ApeKI GCWGC 2 cut(s) 1700, 2805
ApoI RAATTY 6 cut(s) 134, 192, 550, 877, 1511, 2213
ArsI GACNNNNNNTTYG 2 cut(s) 2782, 2814
AspLEI GCGC 1 cut(s) 1917
AspS9I GGNCC 3 cut(s) 781, 1346, 2129
AsuC2I CCSGG 1 cut(s) 2154
AvaI CYCGRG 2 cut(s) 2185, 2415
AvaII GGWCC 2 cut(s) 1346, 2129
BaeI ACNNNNGTAYC 2 cut(s) 102, 135
BalI TGGCCA 4 cut(s) 1245, 1401, 1785, 2324
BanI GGYRCC 2 cut(s) 1417, 1427
BanII GRGCYC 1 cut(s) 2847
BarI GAAGNNNNNNTAC 2 cut(s) 157, 189
BauI CACGAG 1 cut(s) 264
BbsI GAAGAC 2 cut(s) 1524, 2723
BbvCI CCTCAGC 1 cut(s) 2286
BbvI GCAGC 2 cut(s) 1687, 2792
BccI CCATC 6 cut(s) 284, 305, 655, 1703, 2615, 3044
BceAI ACGGC 1 cut(s) 2608
BciT130I CCWGG 3 cut(s) 483, 927, 2868
BclI TGATCA 1 cut(s) 405
BcnI CCSGG 1 cut(s) 2154
BcoDI GTCTC 2 cut(s) 237, 2607
BfmI CTRYAG 4 cut(s) 702, 1253, 1372, 1662
BfrI CTTAAG 2 cut(s) 299, 1336
BglII AGATCT 2 cut(s) 2467, 2720
BisI GCNGC 3 cut(s) 1426, 1701, 2806
BlpI GCTNAGC 1 cut(s) 1406
BlsI GCNGC 3 cut(s) 1427, 1702, 2807
BmcAI AGTACT 1 cut(s) 2822
Bme1390I CCNGG 4 cut(s) 483, 927, 2154, 2868
Bme18I GGWCC 2 cut(s) 1346, 2129
BmeT110I CYCGRG 2 cut(s) 2185, 2415
BmgT120I GGNCC 3 cut(s) 781, 1346, 2129
BmiI GGNNCC 3 cut(s) 1419, 1429, 1644
BmrFI CCNGG 4 cut(s) 483, 927, 2154, 2868
BmrI ACTGGG 1 cut(s) 2694
BmsI GCATC 7 cut(s) 568, 842, 971, 1455, 1477, 1687, 2954
BmuI ACTGGG 1 cut(s) 2694
BpiI GAAGAC 2 cut(s) 1524, 2723
BpmI CTGGAG 1 cut(s) 2589
Bpu10I CCTNAGC 1 cut(s) 2286
Bpu1102I GCTNAGC 1 cut(s) 1406
BpuEI CTTGAG 2 cut(s) 1054, 1758
BpuMI CCSGG 1 cut(s) 2154
BsaBI GATNNNNATC 3 cut(s) 294, 2306, 2675
BsaJI CCNNGG 2 cut(s) 1638, 2200
BsaWI WCCGGW 1 cut(s) 946
BsaXI ACNNNNNCTCC 2 cut(s) 1168, 1198
Bsc4I CCNNNNNNNGG 3 cut(s) 545, 1355, 2020
Bse3DI GCAATG 4 cut(s) 57, 1567, 1833, 2557
Bse8I GATNNNNATC 3 cut(s) 294, 2306, 2675
BseBI CCWGG 3 cut(s) 483, 927, 2868
BseDI CCNNGG 2 cut(s) 1638, 2200
BseGI GGATG 7 cut(s) 316, 583, 737, 986, 1473, 2029, 2821
BseJI GATNNNNATC 3 cut(s) 294, 2306, 2675
BseLI CCNNNNNNNGG 3 cut(s) 545, 1355, 2020
BseMI GCAATG 4 cut(s) 57, 1567, 1833, 2557
BseMII CTCAG 6 cut(s) 503, 1008, 1397, 2277, 2483, 2646
BseRI GAGGAG 1 cut(s) 2172
BseXI GCAGC 2 cut(s) 1687, 2792
Bsh1236I CGCG 1 cut(s) 1454
BshNI GGYRCC 2 cut(s) 1417, 1427
BsiHKCI CYCGRG 2 cut(s) 2185, 2415
BsiSI CCGG 2 cut(s) 947, 2153
BslI CCNNNNNNNGG 3 cut(s) 545, 1355, 2020
BsmAI GTCTC 2 cut(s) 237, 2607
BsmI GAATGC 1 cut(s) 1103
BsoBI CYCGRG 2 cut(s) 2185, 2415
Bsp1286I GDGCHC 1 cut(s) 2847
Bsp1407I TGTACA 1 cut(s) 2854
Bsp1720I GCTNAGC 1 cut(s) 1406
BspACI CCGC 5 cut(s) 498, 978, 1425, 1454, 2946
BspCNI CTCAG 6 cut(s) 504, 1009, 1398, 2278, 2484, 2645
BspFNI CGCG 1 cut(s) 1454
BspLI GGNNCC 3 cut(s) 1419, 1429, 1644
BspPI GGATC 6 cut(s) 530, 833, 1318, 1562, 2546, 2858
BspT107I GGYRCC 2 cut(s) 1417, 1427
BspTI CTTAAG 2 cut(s) 299, 1336
BsrBI CCGCTC 1 cut(s) 498
BsrDI GCAATG 4 cut(s) 57, 1567, 1833, 2557
BsrGI TGTACA 1 cut(s) 2854
BssECI CCNNGG 2 cut(s) 1638, 2200
BssSI CACGAG 1 cut(s) 264
BssT1I CCWWGG 2 cut(s) 1638, 2200
Bst2BI CACGAG 1 cut(s) 264
Bst2UI CCWGG 3 cut(s) 483, 927, 2868
Bst4CI ACNGT 8 cut(s) 86, 223, 1124, 1241, 1530, 1979, 3016, 3037
Bst6I CTCTTC 4 cut(s) 518, 617, 1143, 2493
BstAFI CTTAAG 2 cut(s) 299, 1336
BstAUI TGTACA 1 cut(s) 2854
BstC8I GCNNGC 2 cut(s) 234, 1403
BstDEI CTNAG 9 cut(s) 512, 1017, 1406, 2286, 2335, 2404, 2492, 2632, 3043
BstF5I GGATG 7 cut(s) 316, 583, 737, 986, 1473, 2029, 2821
BstFNI CGCG 1 cut(s) 1454
BstHHI GCGC 1 cut(s) 1917
BstMAI GTCTC 2 cut(s) 237, 2607
BstMWI GCNNNNNNNGC 4 cut(s) 894, 1407, 1487, 1865
BstNI CCWGG 3 cut(s) 483, 927, 2868
BstNSI RCATGY 3 cut(s) 873, 1194, 1558
BstSCI CCNGG 4 cut(s) 481, 925, 2152, 2866
BstSFI CTRYAG 4 cut(s) 702, 1253, 1372, 1662
BstUI CGCG 1 cut(s) 1454
BstV1I GCAGC 2 cut(s) 1687, 2792
BstV2I GAAGAC 2 cut(s) 1524, 2723
BstX2I RGATCY 5 cut(s) 838, 2467, 2538, 2720, 2863
BstYI RGATCY 5 cut(s) 838, 2467, 2538, 2720, 2863
BtgZI GCGATG 1 cut(s) 2977
BtsCI GGATG 7 cut(s) 316, 583, 737, 986, 1473, 2029, 2821
BtsI GCAGTG 2 cut(s) 862, 1381
BtsIMutI CAGTG 6 cut(s) 387, 509, 862, 1341, 1381, 2682
Cac8I GCNNGC 2 cut(s) 234, 1403
CaiI CAGNNNCTG 1 cut(s) 796
CfoI GCGC 1 cut(s) 1917
Cfr13I GGNCC 3 cut(s) 781, 1346, 2129
Csp6I GTAC 7 cut(s) 174, 616, 1770, 1881, 2048, 2821, 2855
CviQI GTAC 7 cut(s) 174, 616, 1770, 1881, 2048, 2821, 2855
DdeI CTNAG 9 cut(s) 512, 1017, 1406, 2286, 2335, 2404, 2492, 2632, 3043
DraI TTTAAA 2 cut(s) 1600, 1764
EaeI YGGCCR 5 cut(s) 1243, 1399, 1783, 2322, 2876
Eam1104I CTCTTC 4 cut(s) 518, 617, 1143, 2493
EarI CTCTTC 4 cut(s) 518, 617, 1143, 2493
EciI GGCGGA 1 cut(s) 993
Eco130I CCWWGG 2 cut(s) 1638, 2200
Eco147I AGGCCT 1 cut(s) 2205
Eco24I GRGCYC 1 cut(s) 2847
Eco47I GGWCC 2 cut(s) 1346, 2129
Eco57I CTGAAG 3 cut(s) 1208, 1538, 2544
Eco88I CYCGRG 2 cut(s) 2185, 2415
EcoRI GAATTC 1 cut(s) 2213
EcoRII CCWGG 3 cut(s) 481, 925, 2866
EcoT14I CCWWGG 2 cut(s) 1638, 2200
EcoT22I ATGCAT 3 cut(s) 871, 2617, 2746
EcoT38I GRGCYC 1 cut(s) 2847
ErhI CCWWGG 2 cut(s) 1638, 2200
FalI AAGNNNNNCTT 2 cut(s) 310, 342
FauI CCCGC 1 cut(s) 2953
FbaI TGATCA 1 cut(s) 405
Fnu4HI GCNGC 3 cut(s) 1426, 1701, 2806
FokI GGATG 7 cut(s) 323, 590, 724, 993, 1460, 2036, 2828
FriOI GRGCYC 1 cut(s) 2847
Fsp4HI GCNGC 3 cut(s) 1426, 1701, 2806
GlaI GCGC 1 cut(s) 1916
GluI GCNGC 3 cut(s) 1426, 1701, 2806
GsuI CTGGAG 1 cut(s) 2589
HapII CCGG 2 cut(s) 947, 2153
HhaI GCGC 1 cut(s) 1917
Hin6I GCGC 1 cut(s) 1915
HinP1I GCGC 1 cut(s) 1915
HincII GTYRAC 2 cut(s) 996, 3033
HindII GTYRAC 2 cut(s) 996, 3033
HindIII AAGCTT 3 cut(s) 1134, 2147, 2332
HpaI GTTAAC 1 cut(s) 3033
HpaII CCGG 2 cut(s) 947, 2153
Hpy166II GTNNAC 7 cut(s) 6, 712, 944, 996, 2137, 2855, 3033
Hpy8I GTNNAC 7 cut(s) 6, 712, 944, 996, 2137, 2855, 3033
HpyAV CCTTC 4 cut(s) 606, 808, 1905, 2979
HpyCH4III ACNGT 8 cut(s) 86, 223, 1124, 1241, 1530, 1979, 3016, 3037
HpyF10VI GCNNNNNNNGC 4 cut(s) 894, 1407, 1487, 1865
HpyF3I CTNAG 9 cut(s) 512, 1017, 1406, 2286, 2335, 2404, 2492, 2632, 3043
HspAI GCGC 1 cut(s) 1915
Ksp22I TGATCA 1 cut(s) 405
KspAI GTTAAC 1 cut(s) 3033
Lsp1109I GCAGC 2 cut(s) 1687, 2792
LweI GCATC 7 cut(s) 568, 842, 971, 1455, 1477, 1687, 2954
MbiI CCGCTC 1 cut(s) 498
MflI RGATCY 5 cut(s) 838, 2467, 2538, 2720, 2863
MhlI GDGCHC 1 cut(s) 2847
MlsI TGGCCA 4 cut(s) 1245, 1401, 1785, 2324
MluNI TGGCCA 4 cut(s) 1245, 1401, 1785, 2324
MlyI GAGTC 4 cut(s) 713, 1640, 2333, 2737
MmeI TCCRAC 5 cut(s) 169, 488, 1175, 1595, 2954
Mox20I TGGCCA 4 cut(s) 1245, 1401, 1785, 2324
Mph1103I ATGCAT 3 cut(s) 871, 2617, 2746
MscI TGGCCA 4 cut(s) 1245, 1401, 1785, 2324
MslI CAYNNNNRTG 2 cut(s) 491, 1971
Msp20I TGGCCA 4 cut(s) 1245, 1401, 1785, 2324
MspA1I CMGCKG 2 cut(s) 1405, 2805
MspCI CTTAAG 2 cut(s) 299, 1336
MspI CCGG 2 cut(s) 947, 2153
MspR9I CCNGG 4 cut(s) 483, 927, 2154, 2868
Mva1269I GAATGC 1 cut(s) 1103
MvaI CCWGG 3 cut(s) 483, 927, 2868
MvnI CGCG 1 cut(s) 1454
MwoI GCNNNNNNNGC 4 cut(s) 894, 1407, 1487, 1865
NciI CCSGG 1 cut(s) 2154
NlaIV GGNNCC 3 cut(s) 1419, 1429, 1644
NsiI ATGCAT 3 cut(s) 871, 2617, 2746
NspI RCATGY 3 cut(s) 873, 1194, 1558
PaeR7I CTCGAG 1 cut(s) 2185
PceI AGGCCT 1 cut(s) 2205
PciI ACATGT 2 cut(s) 1190, 1554
PctI GAATGC 1 cut(s) 1103
PflMI CCANNNNNTGG 1 cut(s) 1355
PfoI TCCNGGA 1 cut(s) 2152
PkrI GCNGC 3 cut(s) 1427, 1702, 2807
PleI GAGTC 4 cut(s) 713, 1639, 2333, 2736
PpsI GAGTC 4 cut(s) 713, 1639, 2333, 2736
PscI ACATGT 2 cut(s) 1190, 1554
Psp6I CCWGG 3 cut(s) 481, 925, 2866
PspGI CCWGG 3 cut(s) 481, 925, 2866
PspN4I GGNNCC 3 cut(s) 1419, 1429, 1644
PspPI GGNCC 3 cut(s) 781, 1346, 2129
PstNI CAGNNNCTG 1 cut(s) 796
PsuI RGATCY 5 cut(s) 838, 2467, 2538, 2720, 2863
PvuII CAGCTG 2 cut(s) 1405, 2805
RsaI GTAC 7 cut(s) 175, 617, 1771, 1882, 2049, 2822, 2856
RsaNI GTAC 7 cut(s) 174, 616, 1770, 1881, 2048, 2821, 2855
RseI CAYNNNNRTG 2 cut(s) 491, 1971
SatI GCNGC 3 cut(s) 1426, 1701, 2806
Sau96I GGNCC 3 cut(s) 781, 1346, 2129
ScaI AGTACT 1 cut(s) 2822
SchI GAGTC 4 cut(s) 713, 1640, 2333, 2737
ScrFI CCNGG 4 cut(s) 483, 927, 2154, 2868
SduI GDGCHC 1 cut(s) 2847
SfaNI GCATC 7 cut(s) 568, 842, 971, 1455, 1477, 1687, 2954
SfcI CTRYAG 4 cut(s) 702, 1253, 1372, 1662
Sfr274I CTCGAG 1 cut(s) 2185
SinI GGWCC 2 cut(s) 1346, 2129
SlaI CTCGAG 1 cut(s) 2185
SmiMI CAYNNNNRTG 2 cut(s) 491, 1971
SmlI CTYRAG 5 cut(s) 299, 1033, 1336, 1773, 2185
SmoI CTYRAG 5 cut(s) 299, 1033, 1336, 1773, 2185
SseBI AGGCCT 1 cut(s) 2205
SsiI CCGC 5 cut(s) 498, 978, 1425, 1454, 2946
SspI AATATT 1 cut(s) 1390
StuI AGGCCT 1 cut(s) 2205
StyD4I CCNGG 4 cut(s) 481, 925, 2152, 2866
StyI CCWWGG 2 cut(s) 1638, 2200
TaaI ACNGT 8 cut(s) 86, 223, 1124, 1241, 1530, 1979, 3016, 3037
TaqI TCGA 7 cut(s) 209, 608, 1688, 2186, 2266, 2356, 3055
TatI WGTACW 3 cut(s) 1769, 2820, 2854
TauI GCSGC 1 cut(s) 1428
TscAI CASTG 6 cut(s) 394, 516, 862, 1348, 1388, 2689
TseI GCWGC 2 cut(s) 1700, 2805
TspGWI ACGGA 1 cut(s) 2048
TspRI CASTG 6 cut(s) 394, 516, 862, 1348, 1388, 2689
Van91I CCANNNNNTGG 1 cut(s) 1355
Vha464I CTTAAG 2 cut(s) 299, 1336
VpaK11BI GGWCC 2 cut(s) 1346, 2129
XapI RAATTY 6 cut(s) 134, 192, 550, 877, 1511, 2213
XbaI TCTAGA 2 cut(s) 1705, 2444
XceI RCATGY 3 cut(s) 873, 1194, 1558
XcmI CCANNNNNNNNNTGG 2 cut(s) 1090, 2578
XhoI CTCGAG 1 cut(s) 2185
ZrmI AGTACT 1 cut(s) 2822
Zsp2I ATGCAT 3 cut(s) 871, 2617, 2746
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.