pycom09g02340

serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0000412
Physical Location & Seq
Forward (+)
1784779 .. 1785610
832 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g02340.2

Sequence Viewer

Length: 783 bp
ATGCTGTTTTCCATCTTCGTTTCATATGCAGTAGCAGTCTTGTTGTGCTCATCTCACCCATTTTGCTGTGCTAGAGATACAATAACAGACGGCACTCCAATGAATGAATCAGAAACTCTTGTTTCATCTGGAGGAAGATTTGAACTCGGATTCTTTAGCCCTTCGCCTAAAGGGACTCAAAGATATGTTGGCATATGGTATCACCAACTGAGTCCGAGGACAGTGGTATGGGTTGCCAACAGAGGAACCCCAGTTCTCAATTCCACTAGAACCGGATCTCTTGCACTCCAAGATGGGAACCTCCATGTGTTGGATGCTGCTGGAAAGAGGTACTGGTCAGCGGAGGTTAAAACATCCAAGTCTTTGACGCAGACTGTGACGCTCATGGATTCCGGGAACCTTGTCCTAAGCAGCGGCGATGATCAATTGGCAGTGAATATTCTGTGGCAGAGCTTTCAAAGTCCAACTGATACATTCATTCCTGGGATGGTAATGAATAAAAGCTTGAAGTTGACTTCATGGACAGGCGAAGATGACCCGGCAAGTGGGCAATTCATCTTGAAACAAGATCCAGATAAAGAGAACCAGTATGTCATCACAAAATCAAAATCAAAAATTGAATCGATTCCGTACTGGAAAGGCGGAGAACAGGCACCTGTTACAGTTTACAGCTTTGATCAAATGCTTCCTGCGGTTACTTACTTACTATCAAATTTCAGCAAGAAATATGTTTTTAGAAATCCCAACATTTTCAGGAATAATACAATTATACAAGGTTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin GUB_WAK_bind PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

261

Amino Acids

28.92

Weight (kDa)

8.35

Isoelectric Point (pI)

35.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000412)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03230 AT4G03230 AT4G03230 AT4G03230 AT4G03230 AT4G03230 AT4G03230 AT4G03230
fragaria_vesca FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44244 FvH4_6g44245 FvH4_6g44245 FvH4_6g44260
malus_domestica MD04G1084700.v1.1 MD09G1099700.v1.1 MD09G1099800.v1.1 MD09G1099900.v1.1 MD09G1100000.v1.1 MD09G1100100.v1.1 MD17G1087900.v1.1
prunus_persica Prupe.3G226000_v2.0.a1 Prupe.3G226200_v2.0.a1 Prupe.3G226300_v2.0.a1 Prupe.3G226300_v2.0.a1 Prupe.3G226600_v2.0.a1 Prupe.3G226700_v2.0.a1
pyrus_communis pycom02g23070 pycom07g15320 pycom09g02310 pycom09g02330 pycom09g02340 pycom09g02350 pycom09g02360 pycom09g02400 pycom09g02410 pycom09g02430 pycom10g07020 pycom17g08490
rosa_chinensis RchiOBHm_Chr1g0328701 RchiOBHm_Chr2g0161021 RchiOBHm_Chr2g0161031 RchiOBHm_Chr2g0161081 RchiOBHm_Chr2g0161101
rosa_laevigata RLG00000021249 RLG00000021250 RLG00000021251 RLG00000021253 RLG00000021257 RLG00000029922
rosa_multiflora Rmu_sc0000955.1_g000023 Rmu_sc0000955.1_g000025 Rmu_sc0000955.1_g000041 Rmu_sc0002312.1_g000012 Rmu_sc0002481.1_g000021 Rmu_sc0002481.1_g000026 Rmu_sc0002481.1_g000028 Rmu_sc0002481.1_g000039 Rmu_sc0006420.1_g000017
rosa_roxburghii Rroxscaffold_2G00089160 Rroxscaffold_2G00089200 Rroxscaffold_2G00089220 Rroxscaffold_2G00089270 Rroxscaffold_2G00089300 Rroxscaffold_4G00321430
rosa_rugosa Rorug02G0485900 Rorug02G0486100 Rorug03G0345100
rosa_samantha Rh1AG094100 Rh1DG097200 Rh2AG552000 Rh2AG552100 Rh2AG552200 Rh2AG552300 Rh2AG552500 Rh2BG566400 Rh2BG566500 Rh2CG535800 Rh2CG535900 Rh2CG536100 Rh2CG536200 Rh2DG575000 Rh2DG575100 Rh2DG575400 Rh2DG575500 Rh2DG575600 Rh4AG077200 Rh4CG082400
rosa_wichuraiana Rw2G045690 Rw2G045700 Rw2G045710 Rw4G006230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 652
AccB7I CCANNNNNTGG 1 cut(s) 310
AciI CCGC 4 cut(s) 341, 414, 642, 692
AclWI GGATC 2 cut(s) 283, 563
AcsI RAATTY 1 cut(s) 712
AfaI GTAC 2 cut(s) 332, 632
AfiI CCNNNNNNNGG 2 cut(s) 310, 545
AgsI TTSAA 5 cut(s) 143, 458, 508, 562, 620
AjnI CCWGG 1 cut(s) 481
AloI GAACNNNNNNTCC 2 cut(s) 237, 269
AluBI AGCT 3 cut(s) 453, 504, 672
AluI AGCT 3 cut(s) 453, 504, 672
Alw21I GWGCWC 1 cut(s) 50
AlwI GGATC 2 cut(s) 283, 563
ApeKI GCWGC 2 cut(s) 317, 411
ApoI RAATTY 1 cut(s) 712
Asp700I GAANNNNTTC 1 cut(s) 624
AsuC2I CCSGG 2 cut(s) 394, 539
AsuHPI GGTGA 2 cut(s) 47, 194
BanI GGYRCC 1 cut(s) 652
Bbv12I GWGCWC 1 cut(s) 50
BbvI GCAGC 2 cut(s) 304, 423
BccI CCATC 3 cut(s) 20, 287, 481
BceAI ACGGC 1 cut(s) 106
BciT130I CCWGG 1 cut(s) 483
BclI TGATCA 2 cut(s) 421, 676
BcnI CCSGG 2 cut(s) 394, 539
BfaI CTAG 2 cut(s) 72, 267
BisI GCNGC 3 cut(s) 318, 412, 415
BlsI GCNGC 3 cut(s) 319, 413, 416
Bme1390I CCNGG 3 cut(s) 394, 483, 539
BmiI GGNNCC 4 cut(s) 247, 299, 398, 654
BmrFI CCNGG 3 cut(s) 394, 483, 539
BmrI ACTGGG 1 cut(s) 245
BmsI GCATC 1 cut(s) 304
BmuI ACTGGG 1 cut(s) 245
BpmI CTGGAG 1 cut(s) 150
Bpu10I CCTNAGC 1 cut(s) 407
BpuMI CCSGG 2 cut(s) 394, 539
Bsa29I ATCGAT 1 cut(s) 623
BsaJI CCNNGG 2 cut(s) 215, 482
BsaWI WCCGGW 1 cut(s) 272
Bsc4I CCNNNNNNNGG 2 cut(s) 310, 545
Bse1I ACTGG 4 cut(s) 251, 338, 586, 638
BseBI CCWGG 1 cut(s) 483
BseCI ATCGAT 1 cut(s) 623
BseDI CCNNGG 2 cut(s) 215, 482
BseGI GGATG 3 cut(s) 319, 353, 492
BseLI CCNNNNNNNGG 2 cut(s) 310, 545
BseMII CTCAG 1 cut(s) 200
BseNI ACTGG 4 cut(s) 251, 338, 586, 638
BseXI GCAGC 2 cut(s) 304, 423
BshNI GGYRCC 1 cut(s) 652
BshVI ATCGAT 1 cut(s) 623
BsiHKAI GWGCWC 1 cut(s) 50
BsiSI CCGG 3 cut(s) 273, 393, 539
BslFI GGGAC 1 cut(s) 187
BslI CCNNNNNNNGG 2 cut(s) 310, 545
BsmFI GGGAC 1 cut(s) 187
Bsp1286I GDGCHC 1 cut(s) 50
Bsp143I GATC 4 cut(s) 275, 421, 568, 676
BspACI CCGC 4 cut(s) 341, 414, 642, 692
BspCNI CTCAG 1 cut(s) 201
BspDI ATCGAT 1 cut(s) 623
BspLI GGNNCC 4 cut(s) 247, 299, 398, 654
BspPI GGATC 2 cut(s) 283, 563
BspT107I GGYRCC 1 cut(s) 652
BsrI ACTGG 4 cut(s) 251, 338, 586, 638
BssECI CCNNGG 2 cut(s) 215, 482
BssMI GATC 4 cut(s) 275, 421, 568, 676
Bst2UI CCWGG 1 cut(s) 483
Bst4CI ACNGT 3 cut(s) 223, 376, 664
BstDEI CTNAG 2 cut(s) 209, 407
BstF5I GGATG 3 cut(s) 319, 353, 492
BstKTI GATC 4 cut(s) 278, 424, 571, 679
BstMBI GATC 4 cut(s) 275, 421, 568, 676
BstNI CCWGG 1 cut(s) 483
BstSCI CCNGG 3 cut(s) 392, 481, 537
BstV1I GCAGC 2 cut(s) 304, 423
BstX2I RGATCY 2 cut(s) 275, 568
BstYI RGATCY 2 cut(s) 275, 568
Bsu15I ATCGAT 1 cut(s) 623
BsuTUI ATCGAT 1 cut(s) 623
BtgZI GCGATG 1 cut(s) 432
BtsCI GGATG 3 cut(s) 319, 353, 492
BtsI GCAGTG 1 cut(s) 438
BtsIMutI CAGTG 2 cut(s) 228, 438
ClaI ATCGAT 1 cut(s) 623
CseI GACGC 2 cut(s) 376, 388
Csp6I GTAC 2 cut(s) 331, 631
CviAII CATG 3 cut(s) 305, 385, 519
CviJI RGCY 4 cut(s) 159, 453, 504, 672
CviKI_1 RGCY 4 cut(s) 159, 453, 504, 672
CviQI GTAC 2 cut(s) 331, 631
DdeI CTNAG 2 cut(s) 209, 407
DpnI GATC 4 cut(s) 277, 423, 570, 678
DpnII GATC 4 cut(s) 275, 421, 568, 676
EciI GGCGGA 1 cut(s) 657
EcoRII CCWGG 1 cut(s) 481
FaeI CATG 3 cut(s) 308, 388, 522
FaqI GGGAC 1 cut(s) 187
FatI CATG 3 cut(s) 304, 384, 518
FauNDI CATATG 2 cut(s) 25, 194
FbaI TGATCA 2 cut(s) 421, 676
Fnu4HI GCNGC 3 cut(s) 318, 412, 415
FokI GGATG 3 cut(s) 326, 340, 499
Fsp4HI GCNGC 3 cut(s) 318, 412, 415
FspBI CTAG 2 cut(s) 72, 267
GluI GCNGC 3 cut(s) 318, 412, 415
GsuI CTGGAG 1 cut(s) 150
HapII CCGG 3 cut(s) 273, 393, 539
HgaI GACGC 2 cut(s) 376, 388
Hin1II CATG 3 cut(s) 308, 388, 522
HincII GTYRAC 1 cut(s) 513
HindII GTYRAC 1 cut(s) 513
HindIII AAGCTT 1 cut(s) 502
HinfI GANTC 7 cut(s) 107, 150, 175, 211, 389, 620, 625
HpaII CCGG 3 cut(s) 273, 393, 539
HphI GGTGA 2 cut(s) 47, 194
Hpy166II GTNNAC 2 cut(s) 513, 667
Hpy188I TCNGA 3 cut(s) 112, 149, 216
Hpy188III TCNNGA 4 cut(s) 129, 559, 572, 754
Hpy8I GTNNAC 2 cut(s) 513, 667
HpyAV CCTTC 1 cut(s) 171
HpyCH4III ACNGT 3 cut(s) 223, 376, 664
HpyCH4V TGCA 2 cut(s) 29, 284
HpyF3I CTNAG 2 cut(s) 209, 407
Hsp92II CATG 3 cut(s) 308, 388, 522
Ksp22I TGATCA 2 cut(s) 421, 676
Kzo9I GATC 4 cut(s) 275, 421, 568, 676
Lsp1109I GCAGC 2 cut(s) 304, 423
LweI GCATC 1 cut(s) 304
MaeI CTAG 2 cut(s) 72, 267
MaeIII GTNAC 3 cut(s) 376, 658, 694
MalI GATC 4 cut(s) 277, 423, 570, 678
MboI GATC 4 cut(s) 275, 421, 568, 676
MboII GAAGA 3 cut(s) 7, 147, 542
MfeI CAATTG 1 cut(s) 425
MflI RGATCY 2 cut(s) 275, 568
MhlI GDGCHC 1 cut(s) 50
MluCI AATT 6 cut(s) 259, 425, 551, 615, 712, 765
MlyI GAGTC 2 cut(s) 169, 220
MmeI TCCRAC 2 cut(s) 291, 488
MnlI CCTC 6 cut(s) 125, 210, 236, 311, 321, 337
MroXI GAANNNNTTC 1 cut(s) 624
MseI TTAA 1 cut(s) 348
MslI CAYNNNNRTG 1 cut(s) 98
MspA1I CMGCKG 2 cut(s) 341, 414
MspI CCGG 3 cut(s) 273, 393, 539
MspR9I CCNGG 3 cut(s) 394, 483, 539
MunI CAATTG 1 cut(s) 425
MvaI CCWGG 1 cut(s) 483
NciI CCSGG 2 cut(s) 394, 539
NdeI CATATG 2 cut(s) 25, 194
NdeII GATC 4 cut(s) 275, 421, 568, 676
NlaIII CATG 3 cut(s) 308, 388, 522
NlaIV GGNNCC 4 cut(s) 247, 299, 398, 654
NmuCI GTSAC 1 cut(s) 376
PdmI GAANNNNTTC 1 cut(s) 624
PfeI GAWTC 5 cut(s) 107, 150, 389, 620, 625
PflMI CCANNNNNTGG 1 cut(s) 310
PfoI TCCNGGA 1 cut(s) 392
PkrI GCNGC 3 cut(s) 319, 413, 416
PleI GAGTC 2 cut(s) 169, 219
PpsI GAGTC 2 cut(s) 169, 219
Psp6I CCWGG 1 cut(s) 481
PspGI CCWGG 1 cut(s) 481
PspN4I GGNNCC 4 cut(s) 247, 299, 398, 654
PsuI RGATCY 2 cut(s) 275, 568
RsaI GTAC 2 cut(s) 332, 632
RsaNI GTAC 2 cut(s) 331, 631
RseI CAYNNNNRTG 1 cut(s) 98
SaqAI TTAA 1 cut(s) 348
SatI GCNGC 3 cut(s) 318, 412, 415
Sau3AI GATC 4 cut(s) 275, 421, 568, 676
SchI GAGTC 2 cut(s) 169, 220
ScrFI CCNGG 3 cut(s) 394, 483, 539
SduI GDGCHC 1 cut(s) 50
SetI ASST 9 cut(s) 303, 332, 348, 402, 455, 506, 658, 674, 778
SfaNI GCATC 1 cut(s) 304
SmiMI CAYNNNNRTG 1 cut(s) 98
Sse9I AATT 6 cut(s) 259, 425, 551, 615, 712, 765
SsiI CCGC 4 cut(s) 341, 414, 642, 692
SspI AATATT 1 cut(s) 439
SspMI CTAG 2 cut(s) 72, 267
StyD4I CCNGG 3 cut(s) 392, 481, 537
TaaI ACNGT 3 cut(s) 223, 376, 664
TaqI TCGA 1 cut(s) 623
TasI AATT 6 cut(s) 259, 425, 551, 615, 712, 765
TauI GCSGC 1 cut(s) 417
TfiI GAWTC 5 cut(s) 107, 150, 389, 620, 625
Tru1I TTAA 1 cut(s) 348
Tru9I TTAA 1 cut(s) 348
TscAI CASTG 2 cut(s) 228, 438
TseFI GTSAC 1 cut(s) 376
TseI GCWGC 2 cut(s) 317, 411
Tsp45I GTSAC 1 cut(s) 376
TspDTI ATGAA 8 cut(s) 12, 114, 116, 120, 466, 507, 509, 544
TspGWI ACGGA 1 cut(s) 618
TspRI CASTG 2 cut(s) 228, 438
Van91I CCANNNNNTGG 1 cut(s) 310
XapI RAATTY 1 cut(s) 712
XmnI GAANNNNTTC 1 cut(s) 624
XspI CTAG 2 cut(s) 72, 267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.