divergent subfamily of APPLE domains
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 619, 629 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 557 |
| AccII | CGCG | 1 cut(s) | 656 |
| AciI | CCGC | 3 cut(s) | 180, 627, 656 |
| AclWI | GGATC | 3 cut(s) | 35, 520, 764 |
| AcoI | YGGCCR | 3 cut(s) | 445, 601, 985 |
| AcsI | RAATTY | 3 cut(s) | 79, 713, 815 |
| AcuI | CTGAAG | 2 cut(s) | 410, 740 |
| AfaI | GTAC | 2 cut(s) | 973, 1084 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 370, 557, 1225 |
| AflII | CTTAAG | 1 cut(s) | 538 |
| AflIII | ACRYGT | 2 cut(s) | 392, 756 |
| AgsI | TTSAA | 7 cut(s) | 390, 597, 821, 1080, 1151, 1161, 1211 |
| AjnI | CCWGG | 1 cut(s) | 127 |
| AlwI | GGATC | 3 cut(s) | 35, 520, 764 |
| AoxI | GGCC | 4 cut(s) | 445, 601, 881, 985 |
| ApoI | RAATTY | 3 cut(s) | 79, 713, 815 |
| AspLEI | GCGC | 1 cut(s) | 1119 |
| AsuHPI | GGTGA | 6 cut(s) | 138, 409, 559, 572, 828, 1016 |
| BalI | TGGCCA | 3 cut(s) | 447, 603, 987 |
| BanI | GGYRCC | 2 cut(s) | 619, 629 |
| BbsI | GAAGAC | 1 cut(s) | 726 |
| BccI | CCATC | 1 cut(s) | 905 |
| BciT130I | CCWGG | 1 cut(s) | 129 |
| BfaI | CTAG | 6 cut(s) | 45, 141, 189, 908, 1025, 1067 |
| BfmI | CTRYAG | 3 cut(s) | 455, 574, 864 |
| BfrI | CTTAAG | 1 cut(s) | 538 |
| BisI | GCNGC | 1 cut(s) | 628 |
| BlpI | GCTNAGC | 1 cut(s) | 608 |
| BlsI | GCNGC | 1 cut(s) | 629 |
| Bme1390I | CCNGG | 1 cut(s) | 129 |
| BmiI | GGNNCC | 3 cut(s) | 621, 631, 846 |
| BmrFI | CCNGG | 1 cut(s) | 129 |
| BmsI | GCATC | 4 cut(s) | 173, 657, 679, 889 |
| BpiI | GAAGAC | 1 cut(s) | 726 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 608 |
| BpuEI | CTTGAG | 2 cut(s) | 256, 960 |
| BsaJI | CCNNGG | 1 cut(s) | 840 |
| BsaWI | WCCGGW | 1 cut(s) | 148 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 370, 557, 1225 |
| Bse1I | ACTGG | 3 cut(s) | 604, 730, 1006 |
| Bse3DI | GCAATG | 2 cut(s) | 769, 1035 |
| BseBI | CCWGG | 1 cut(s) | 129 |
| BseDI | CCNNGG | 1 cut(s) | 840 |
| BseGI | GGATG | 4 cut(s) | 188, 675, 726, 1234 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 370, 557, 1225 |
| BseMI | GCAATG | 2 cut(s) | 769, 1035 |
| BseMII | CTCAG | 3 cut(s) | 189, 210, 599 |
| BseNI | ACTGG | 3 cut(s) | 604, 730, 1006 |
| BseRI | GAGGAG | 1 cut(s) | 511 |
| Bsh1236I | CGCG | 1 cut(s) | 656 |
| BshFI | GGCC | 4 cut(s) | 447, 603, 883, 987 |
| BshNI | GGYRCC | 2 cut(s) | 619, 629 |
| BsiSI | CCGG | 1 cut(s) | 149 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 370, 557, 1225 |
| BsmI | GAATGC | 1 cut(s) | 305 |
| BsnI | GGCC | 4 cut(s) | 447, 603, 883, 987 |
| Bsp143I | GATC | 3 cut(s) | 40, 525, 769 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 608 |
| BspACI | CCGC | 3 cut(s) | 180, 627, 656 |
| BspANI | GGCC | 4 cut(s) | 447, 603, 883, 987 |
| BspCNI | CTCAG | 3 cut(s) | 188, 211, 600 |
| BspFNI | CGCG | 1 cut(s) | 656 |
| BspLI | GGNNCC | 3 cut(s) | 621, 631, 846 |
| BspPI | GGATC | 3 cut(s) | 35, 520, 764 |
| BspT107I | GGYRCC | 2 cut(s) | 619, 629 |
| BspTI | CTTAAG | 1 cut(s) | 538 |
| BsrDI | GCAATG | 2 cut(s) | 769, 1035 |
| BsrI | ACTGG | 3 cut(s) | 604, 730, 1006 |
| BssECI | CCNNGG | 1 cut(s) | 840 |
| BssMI | GATC | 3 cut(s) | 40, 525, 769 |
| BssT1I | CCWWGG | 1 cut(s) | 840 |
| Bst2UI | CCWGG | 1 cut(s) | 129 |
| Bst4CI | ACNGT | 2 cut(s) | 326, 443 |
| Bst6I | CTCTTC | 1 cut(s) | 345 |
| BstAFI | CTTAAG | 1 cut(s) | 538 |
| BstC8I | GCNNGC | 1 cut(s) | 605 |
| BstDEI | CTNAG | 3 cut(s) | 175, 219, 608 |
| BstF5I | GGATG | 4 cut(s) | 188, 675, 726, 1234 |
| BstFNI | CGCG | 1 cut(s) | 656 |
| BstHHI | GCGC | 1 cut(s) | 1119 |
| BstKTI | GATC | 3 cut(s) | 43, 528, 772 |
| BstMBI | GATC | 3 cut(s) | 40, 525, 769 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 96, 609, 689, 1067 |
| BstNI | CCWGG | 1 cut(s) | 129 |
| BstNSI | RCATGY | 3 cut(s) | 75, 396, 760 |
| BstSCI | CCNGG | 1 cut(s) | 127 |
| BstSFI | CTRYAG | 3 cut(s) | 455, 574, 864 |
| BstUI | CGCG | 1 cut(s) | 656 |
| BstV2I | GAAGAC | 1 cut(s) | 726 |
| BstX2I | RGATCY | 1 cut(s) | 40 |
| BstYI | RGATCY | 1 cut(s) | 40 |
| BsuRI | GGCC | 4 cut(s) | 447, 603, 883, 987 |
| BtsCI | GGATG | 4 cut(s) | 188, 675, 726, 1234 |
| BtsI | GCAGTG | 1 cut(s) | 583 |
| BtsIMutI | CAGTG | 1 cut(s) | 583 |
| Cac8I | GCNNGC | 1 cut(s) | 605 |
| CfoI | GCGC | 1 cut(s) | 1119 |
| Csp6I | GTAC | 2 cut(s) | 972, 1083 |
| CviAII | CATG | 5 cut(s) | 72, 164, 393, 638, 757 |
| CviQI | GTAC | 2 cut(s) | 972, 1083 |
| DdeI | CTNAG | 3 cut(s) | 175, 219, 608 |
| DpnI | GATC | 3 cut(s) | 42, 527, 771 |
| DpnII | GATC | 3 cut(s) | 40, 525, 769 |
| DraI | TTTAAA | 2 cut(s) | 802, 966 |
| EaeI | YGGCCR | 3 cut(s) | 445, 601, 985 |
| Eam1104I | CTCTTC | 1 cut(s) | 345 |
| EarI | CTCTTC | 1 cut(s) | 345 |
| EciI | GGCGGA | 1 cut(s) | 195 |
| Eco130I | CCWWGG | 1 cut(s) | 840 |
| Eco57I | CTGAAG | 2 cut(s) | 410, 740 |
| EcoRII | CCWGG | 1 cut(s) | 127 |
| EcoT14I | CCWWGG | 1 cut(s) | 840 |
| EcoT22I | ATGCAT | 1 cut(s) | 73 |
| ErhI | CCWWGG | 1 cut(s) | 840 |
| FaeI | CATG | 5 cut(s) | 75, 167, 396, 641, 760 |
| FatI | CATG | 5 cut(s) | 71, 163, 392, 637, 756 |
| Fnu4HI | GCNGC | 1 cut(s) | 628 |
| FokI | GGATG | 4 cut(s) | 195, 662, 713, 1241 |
| Fsp4HI | GCNGC | 1 cut(s) | 628 |
| FspBI | CTAG | 6 cut(s) | 45, 141, 189, 908, 1025, 1067 |
| GlaI | GCGC | 1 cut(s) | 1118 |
| GluI | GCNGC | 1 cut(s) | 628 |
| HaeIII | GGCC | 4 cut(s) | 447, 603, 883, 987 |
| HapII | CCGG | 1 cut(s) | 149 |
| HhaI | GCGC | 1 cut(s) | 1119 |
| Hin1II | CATG | 5 cut(s) | 75, 167, 396, 641, 760 |
| Hin6I | GCGC | 1 cut(s) | 1117 |
| HinP1I | GCGC | 1 cut(s) | 1117 |
| HincII | GTYRAC | 1 cut(s) | 198 |
| HindII | GTYRAC | 1 cut(s) | 198 |
| HindIII | AAGCTT | 1 cut(s) | 336 |
| HinfI | GANTC | 6 cut(s) | 160, 269, 451, 485, 833, 1211 |
| HpaII | CCGG | 1 cut(s) | 149 |
| HphI | GGTGA | 6 cut(s) | 138, 409, 559, 572, 828, 1016 |
| Hpy166II | GTNNAC | 2 cut(s) | 146, 198 |
| Hpy188I | TCNGA | 2 cut(s) | 478, 720 |
| Hpy188III | TCNNGA | 6 cut(s) | 235, 428, 788, 908, 977, 1198 |
| Hpy8I | GTNNAC | 2 cut(s) | 146, 198 |
| HpyAV | CCTTC | 3 cut(s) | 10, 1107, 1127 |
| HpyCH4III | ACNGT | 2 cut(s) | 326, 443 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 96, 609, 689, 1067 |
| HpyF3I | CTNAG | 3 cut(s) | 175, 219, 608 |
| Hsp92II | CATG | 5 cut(s) | 75, 167, 396, 641, 760 |
| HspAI | GCGC | 1 cut(s) | 1117 |
| Kzo9I | GATC | 3 cut(s) | 40, 525, 769 |
| LmnI | GCTCC | 1 cut(s) | 498 |
| LweI | GCATC | 4 cut(s) | 173, 657, 679, 889 |
| MaeI | CTAG | 6 cut(s) | 45, 141, 189, 908, 1025, 1067 |
| MalI | GATC | 3 cut(s) | 42, 527, 771 |
| MboI | GATC | 3 cut(s) | 40, 525, 769 |
| MboII | GAAGA | 7 cut(s) | 362, 416, 726, 928, 1027, 1122, 1139 |
| MflI | RGATCY | 1 cut(s) | 40 |
| MlsI | TGGCCA | 3 cut(s) | 447, 603, 987 |
| MluCI | AATT | 8 cut(s) | 79, 154, 275, 385, 713, 815, 967, 1071 |
| MluNI | TGGCCA | 3 cut(s) | 447, 603, 987 |
| MlyI | GAGTC | 1 cut(s) | 842 |
| MmeI | TCCRAC | 2 cut(s) | 377, 797 |
| MnlI | CCTC | 8 cut(s) | 346, 424, 489, 610, 800, 868, 894, 1234 |
| Mox20I | TGGCCA | 3 cut(s) | 447, 603, 987 |
| Mph1103I | ATGCAT | 1 cut(s) | 73 |
| MscI | TGGCCA | 3 cut(s) | 447, 603, 987 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1176 |
| Msp20I | TGGCCA | 3 cut(s) | 447, 603, 987 |
| MspA1I | CMGCKG | 1 cut(s) | 607 |
| MspCI | CTTAAG | 1 cut(s) | 538 |
| MspI | CCGG | 1 cut(s) | 149 |
| MspR9I | CCNGG | 1 cut(s) | 129 |
| Mva1269I | GAATGC | 1 cut(s) | 305 |
| MvaI | CCWGG | 1 cut(s) | 129 |
| MvnI | CGCG | 1 cut(s) | 656 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 96, 609, 689, 1067 |
| NdeII | GATC | 3 cut(s) | 40, 525, 769 |
| NlaIII | CATG | 5 cut(s) | 75, 167, 396, 641, 760 |
| NlaIV | GGNNCC | 3 cut(s) | 621, 631, 846 |
| NmuCI | GTSAC | 8 cut(s) | 206, 224, 405, 415, 565, 640, 748, 834 |
| NsiI | ATGCAT | 1 cut(s) | 73 |
| NspI | RCATGY | 3 cut(s) | 75, 396, 760 |
| PciI | ACATGT | 2 cut(s) | 392, 756 |
| PctI | GAATGC | 1 cut(s) | 305 |
| PfeI | GAWTC | 5 cut(s) | 160, 269, 451, 485, 1211 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 557 |
| PkrI | GCNGC | 1 cut(s) | 629 |
| PleI | GAGTC | 1 cut(s) | 841 |
| PpsI | GAGTC | 1 cut(s) | 841 |
| PscI | ACATGT | 2 cut(s) | 392, 756 |
| Psp6I | CCWGG | 1 cut(s) | 127 |
| PspGI | CCWGG | 1 cut(s) | 127 |
| PspN4I | GGNNCC | 3 cut(s) | 621, 631, 846 |
| PsuI | RGATCY | 1 cut(s) | 40 |
| PvuII | CAGCTG | 1 cut(s) | 607 |
| RsaI | GTAC | 2 cut(s) | 973, 1084 |
| RsaNI | GTAC | 2 cut(s) | 972, 1083 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1176 |
| SatI | GCNGC | 1 cut(s) | 628 |
| Sau3AI | GATC | 3 cut(s) | 40, 525, 769 |
| SchI | GAGTC | 1 cut(s) | 842 |
| ScrFI | CCNGG | 1 cut(s) | 129 |
| SfaNI | GCATC | 4 cut(s) | 173, 657, 679, 889 |
| SfcI | CTRYAG | 3 cut(s) | 455, 574, 864 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1176 |
| SmlI | CTYRAG | 3 cut(s) | 235, 538, 975 |
| SmoI | CTYRAG | 3 cut(s) | 235, 538, 975 |
| Sse9I | AATT | 8 cut(s) | 79, 154, 275, 385, 713, 815, 967, 1071 |
| SsiI | CCGC | 3 cut(s) | 180, 627, 656 |
| SspI | AATATT | 1 cut(s) | 592 |
| SspMI | CTAG | 6 cut(s) | 45, 141, 189, 908, 1025, 1067 |
| StyD4I | CCNGG | 1 cut(s) | 127 |
| StyI | CCWWGG | 1 cut(s) | 840 |
| TaaI | ACNGT | 2 cut(s) | 326, 443 |
| TaqI | TCGA | 1 cut(s) | 890 |
| TasI | AATT | 8 cut(s) | 79, 154, 275, 385, 713, 815, 967, 1071 |
| TatI | WGTACW | 1 cut(s) | 971 |
| TauI | GCSGC | 1 cut(s) | 630 |
| TfiI | GAWTC | 5 cut(s) | 160, 269, 451, 485, 1211 |
| TscAI | CASTG | 1 cut(s) | 590 |
| TseFI | GTSAC | 8 cut(s) | 206, 224, 405, 415, 565, 640, 748, 834 |
| Tsp45I | GTSAC | 8 cut(s) | 206, 224, 405, 415, 565, 640, 748, 834 |
| TspDTI | ATGAA | 4 cut(s) | 266, 363, 711, 828 |
| TspGWI | ACGGA | 1 cut(s) | 1253 |
| TspRI | CASTG | 1 cut(s) | 590 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 557 |
| Vha464I | CTTAAG | 1 cut(s) | 538 |
| XapI | RAATTY | 3 cut(s) | 79, 713, 815 |
| XbaI | TCTAGA | 1 cut(s) | 907 |
| XceI | RCATGY | 3 cut(s) | 75, 396, 760 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 292, 371 |
| XspI | CTAG | 6 cut(s) | 45, 141, 189, 908, 1025, 1067 |
| Zsp2I | ATGCAT | 1 cut(s) | 73 |