Rmu_sc0002481.1_g000028

divergent subfamily of APPLE domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002481.1
OG0000412
Physical Location & Seq
Reverse (-)
116009 .. 116641
633 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002481.1_g000028.1.cds

Sequence Viewer

Length: 633 bp
atggtatcttacacattcttcttgtatctagtactattgctgtgctcttatgacaatctattttgttctgctagagatacactaacatttgacgatccaatcaccgatgatggatcaaaagctcttatttcagcaggaggagaatttgaactaggtttcttccctactactacagggaaaagatatgtgggcatatggtatcataaggtcactccaagaacagttgtatgggtttccaatagagatgaacctctacttgccaattccattggagctcttgcaattgaagaaggtaatctccgcgtgttggacagtgttactcgaaagccttattggtcaacagagattggaaaatcttcgtcatataacatgattgtgaagataatggagtctggaaacctggtgttaatggattctcatcagatggcagcgaatattctgtggcagagctttcaaaatccaactgatacattcattcttgggatgctaatggatagtaacttggagttgacttcatggagcgatgaagatgacccaagaactgggaacttcaccttcaaactagatcaaggagggaacctatttaccatattaaataaatcgattccttactatataagtggagagtgttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin GUB_WAK_bind PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

210

Amino Acids

23.64

Weight (kDa)

4.55

Isoelectric Point (pI)

31.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000412)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03230 AT4G03230 AT4G03230 AT4G03230 AT4G03230 AT4G03230 AT4G03230 AT4G03230
fragaria_vesca FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44244 FvH4_6g44245 FvH4_6g44245 FvH4_6g44260
malus_domestica MD04G1084700.v1.1 MD09G1099700.v1.1 MD09G1099800.v1.1 MD09G1099900.v1.1 MD09G1100000.v1.1 MD09G1100100.v1.1 MD17G1087900.v1.1
prunus_persica Prupe.3G226000_v2.0.a1 Prupe.3G226200_v2.0.a1 Prupe.3G226300_v2.0.a1 Prupe.3G226300_v2.0.a1 Prupe.3G226600_v2.0.a1 Prupe.3G226700_v2.0.a1
pyrus_communis pycom02g23070 pycom07g15320 pycom09g02310 pycom09g02330 pycom09g02340 pycom09g02350 pycom09g02360 pycom09g02400 pycom09g02410 pycom09g02430 pycom10g07020 pycom17g08490
rosa_chinensis RchiOBHm_Chr1g0328701 RchiOBHm_Chr2g0161021 RchiOBHm_Chr2g0161031 RchiOBHm_Chr2g0161081 RchiOBHm_Chr2g0161101
rosa_laevigata RLG00000021249 RLG00000021250 RLG00000021251 RLG00000021253 RLG00000021257 RLG00000029922
rosa_multiflora Rmu_sc0000955.1_g000023 Rmu_sc0000955.1_g000025 Rmu_sc0000955.1_g000041 Rmu_sc0002312.1_g000012 Rmu_sc0002481.1_g000021 Rmu_sc0002481.1_g000026 Rmu_sc0002481.1_g000028 Rmu_sc0002481.1_g000039 Rmu_sc0006420.1_g000017
rosa_roxburghii Rroxscaffold_2G00089160 Rroxscaffold_2G00089200 Rroxscaffold_2G00089220 Rroxscaffold_2G00089270 Rroxscaffold_2G00089300 Rroxscaffold_4G00321430
rosa_rugosa Rorug02G0485900 Rorug02G0486100 Rorug03G0345100
rosa_samantha Rh1AG094100 Rh1DG097200 Rh2AG552000 Rh2AG552100 Rh2AG552200 Rh2AG552300 Rh2AG552500 Rh2BG566400 Rh2BG566500 Rh2CG535800 Rh2CG535900 Rh2CG536100 Rh2CG536200 Rh2DG575000 Rh2DG575100 Rh2DG575400 Rh2DG575500 Rh2DG575600 Rh4AG077200 Rh4CG082400
rosa_wichuraiana Rw2G045690 Rw2G045700 Rw2G045710 Rw4G006230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 542
AccII CGCG 1 cut(s) 303
AciI CCGC 1 cut(s) 301
AclWI GGATC 2 cut(s) 89, 121
AcsI RAATTY 1 cut(s) 143
AfaI GTAC 1 cut(s) 33
AfiI CCNNNNNNNGG 2 cut(s) 307, 542
AgsI TTSAA 4 cut(s) 149, 287, 455, 559
AjnI CCWGG 1 cut(s) 399
AjuI GAANNNNNNNTTGG 2 cut(s) 316, 348
AluBI AGCT 3 cut(s) 122, 275, 450
AluI AGCT 3 cut(s) 122, 275, 450
Alw21I GWGCWC 2 cut(s) 47, 277
AlwI GGATC 2 cut(s) 89, 121
ApeKI GCWGC 1 cut(s) 428
ApoI RAATTY 1 cut(s) 143
Asp700I GAANNNNTTC 1 cut(s) 355
AsuHPI GGTGA 2 cut(s) 94, 544
BanII GRGCYC 1 cut(s) 277
Bbv12I GWGCWC 2 cut(s) 47, 277
BbvI GCAGC 1 cut(s) 440
BccI CCATC 2 cut(s) 104, 418
BciT130I CCWGG 1 cut(s) 401
BfaI CTAG 4 cut(s) 29, 72, 152, 563
BfmI CTRYAG 1 cut(s) 171
BisI GCNGC 1 cut(s) 429
BlsI GCNGC 1 cut(s) 430
BmcAI AGTACT 1 cut(s) 33
Bme1390I CCNGG 1 cut(s) 401
BmiI GGNNCC 1 cut(s) 578
BmrFI CCNGG 1 cut(s) 401
BmrI ACTGGG 1 cut(s) 552
BmsI GCATC 1 cut(s) 474
BmuI ACTGGG 1 cut(s) 552
Bsa29I ATCGAT 1 cut(s) 602
BsaBI GATNNNNATC 1 cut(s) 417
Bsc4I CCNNNNNNNGG 2 cut(s) 307, 542
Bse1I ACTGG 1 cut(s) 547
Bse8I GATNNNNATC 1 cut(s) 417
BseBI CCWGG 1 cut(s) 401
BseCI ATCGAT 1 cut(s) 602
BseGI GGATG 1 cut(s) 489
BseJI GATNNNNATC 1 cut(s) 417
BseLI CCNNNNNNNGG 2 cut(s) 307, 542
BseNI ACTGG 1 cut(s) 547
BseRI GAGGAG 1 cut(s) 153
BseXI GCAGC 1 cut(s) 440
Bsh1236I CGCG 1 cut(s) 303
BshVI ATCGAT 1 cut(s) 602
BsiHKAI GWGCWC 2 cut(s) 47, 277
BslI CCNNNNNNNGG 2 cut(s) 307, 542
Bsp1286I GDGCHC 2 cut(s) 47, 277
Bsp143I GATC 3 cut(s) 94, 113, 565
BspACI CCGC 1 cut(s) 301
BspDI ATCGAT 1 cut(s) 602
BspFNI CGCG 1 cut(s) 303
BspLI GGNNCC 1 cut(s) 578
BspPI GGATC 2 cut(s) 89, 121
BsrI ACTGG 1 cut(s) 547
BssMI GATC 3 cut(s) 94, 113, 565
Bst2UI CCWGG 1 cut(s) 401
Bst4CI ACNGT 2 cut(s) 223, 314
BstF5I GGATG 1 cut(s) 489
BstFNI CGCG 1 cut(s) 303
BstKTI GATC 3 cut(s) 97, 116, 568
BstMBI GATC 3 cut(s) 94, 113, 565
BstNI CCWGG 1 cut(s) 401
BstSCI CCNGG 1 cut(s) 399
BstSFI CTRYAG 1 cut(s) 171
BstUI CGCG 1 cut(s) 303
BstV1I GCAGC 1 cut(s) 440
Bsu15I ATCGAT 1 cut(s) 602
BsuTUI ATCGAT 1 cut(s) 602
BtgZI GCGATG 1 cut(s) 537
BtsCI GGATG 1 cut(s) 489
BtsIMutI CAGTG 1 cut(s) 319
ClaI ATCGAT 1 cut(s) 602
CsiI ACCWGGT 1 cut(s) 399
Csp6I GTAC 1 cut(s) 32
CviAII CATG 2 cut(s) 370, 516
CviJI RGCY 4 cut(s) 122, 275, 328, 450
CviKI_1 RGCY 4 cut(s) 122, 275, 328, 450
CviQI GTAC 1 cut(s) 32
DpnI GATC 3 cut(s) 96, 115, 567
DpnII GATC 3 cut(s) 94, 113, 565
Ecl136II GAGCTC 1 cut(s) 275
Eco24I GRGCYC 1 cut(s) 277
Eco53kI GAGCTC 1 cut(s) 275
EcoICRI GAGCTC 1 cut(s) 275
EcoRII CCWGG 1 cut(s) 399
EcoT38I GRGCYC 1 cut(s) 277
FaeI CATG 2 cut(s) 373, 519
FatI CATG 2 cut(s) 369, 515
FauNDI CATATG 1 cut(s) 194
Fnu4HI GCNGC 1 cut(s) 429
FokI GGATG 1 cut(s) 496
FriOI GRGCYC 1 cut(s) 277
Fsp4HI GCNGC 1 cut(s) 429
FspBI CTAG 4 cut(s) 29, 72, 152, 563
GluI GCNGC 1 cut(s) 429
Hin1II CATG 2 cut(s) 373, 519
HincII GTYRAC 2 cut(s) 339, 510
HindII GTYRAC 2 cut(s) 339, 510
HinfI GANTC 3 cut(s) 389, 413, 604
HphI GGTGA 2 cut(s) 94, 544
Hpy166II GTNNAC 2 cut(s) 339, 510
Hpy188I TCNGA 1 cut(s) 423
Hpy188III TCNNGA 1 cut(s) 393
Hpy8I GTNNAC 2 cut(s) 339, 510
HpyAV CCTTC 2 cut(s) 284, 565
HpyCH4III ACNGT 2 cut(s) 223, 314
HpyCH4V TGCA 1 cut(s) 281
Hsp92II CATG 2 cut(s) 373, 519
Kzo9I GATC 3 cut(s) 94, 113, 565
LmnI GCTCC 2 cut(s) 272, 519
LpnPI CCDG 6 cut(s) 120, 159, 378, 386, 413, 528
Lsp1109I GCAGC 1 cut(s) 440
LweI GCATC 1 cut(s) 474
MabI ACCWGGT 1 cut(s) 399
MaeI CTAG 4 cut(s) 29, 72, 152, 563
MaeIII GTNAC 3 cut(s) 208, 316, 497
MalI GATC 3 cut(s) 96, 115, 567
MboI GATC 3 cut(s) 94, 113, 565
MboII GAAGA 6 cut(s) 10, 151, 299, 348, 391, 539
MfeI CAATTG 1 cut(s) 282
MhlI GDGCHC 2 cut(s) 47, 277
MluCI AATT 3 cut(s) 143, 262, 282
MlyI GAGTC 1 cut(s) 398
MmeI TCCRAC 2 cut(s) 288, 485
MnlI CCTC 3 cut(s) 131, 261, 566
MroXI GAANNNNTTC 1 cut(s) 355
MseI TTAA 2 cut(s) 407, 593
MslI CAYNNNNRTG 1 cut(s) 374
MspR9I CCNGG 1 cut(s) 401
MunI CAATTG 1 cut(s) 282
MvaI CCWGG 1 cut(s) 401
MvnI CGCG 1 cut(s) 303
NdeI CATATG 1 cut(s) 194
NdeII GATC 3 cut(s) 94, 113, 565
NlaIII CATG 2 cut(s) 373, 519
NlaIV GGNNCC 1 cut(s) 578
NmuCI GTSAC 1 cut(s) 208
PdmI GAANNNNTTC 1 cut(s) 355
PfeI GAWTC 2 cut(s) 413, 604
PflMI CCANNNNNTGG 1 cut(s) 542
PkrI GCNGC 1 cut(s) 430
PleI GAGTC 1 cut(s) 397
PpsI GAGTC 1 cut(s) 397
Psp124BI GAGCTC 1 cut(s) 277
Psp6I CCWGG 1 cut(s) 399
PspGI CCWGG 1 cut(s) 399
PspN4I GGNNCC 1 cut(s) 578
RsaI GTAC 1 cut(s) 33
RsaNI GTAC 1 cut(s) 32
RseI CAYNNNNRTG 1 cut(s) 374
SacI GAGCTC 1 cut(s) 277
SaqAI TTAA 2 cut(s) 407, 593
SatI GCNGC 1 cut(s) 429
Sau3AI GATC 3 cut(s) 94, 113, 565
ScaI AGTACT 1 cut(s) 33
SchI GAGTC 1 cut(s) 398
ScrFI CCNGG 1 cut(s) 401
SduI GDGCHC 2 cut(s) 47, 277
SexAI ACCWGGT 1 cut(s) 399
SfaNI GCATC 1 cut(s) 474
SfcI CTRYAG 1 cut(s) 171
SmiMI CAYNNNNRTG 1 cut(s) 374
Sse9I AATT 3 cut(s) 143, 262, 282
SsiI CCGC 1 cut(s) 301
SspI AATATT 1 cut(s) 436
SspMI CTAG 4 cut(s) 29, 72, 152, 563
SstI GAGCTC 1 cut(s) 277
StyD4I CCNGG 1 cut(s) 399
TaaI ACNGT 2 cut(s) 223, 314
TaqI TCGA 2 cut(s) 322, 602
TasI AATT 3 cut(s) 143, 262, 282
TatI WGTACW 1 cut(s) 31
TfiI GAWTC 2 cut(s) 413, 604
Tru1I TTAA 2 cut(s) 407, 593
Tru9I TTAA 2 cut(s) 407, 593
TscAI CASTG 1 cut(s) 319
TseFI GTSAC 1 cut(s) 208
TseI GCWGC 1 cut(s) 428
Tsp45I GTSAC 1 cut(s) 208
TspDTI ATGAA 4 cut(s) 261, 463, 504, 540
TspRI CASTG 1 cut(s) 319
Van91I CCANNNNNTGG 1 cut(s) 542
XapI RAATTY 1 cut(s) 143
XmnI GAANNNNTTC 1 cut(s) 355
XspI CTAG 4 cut(s) 29, 72, 152, 563
ZrmI AGTACT 1 cut(s) 33
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.