Rh2DG575500

G-type lectin S-receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
Physical Location & Seq
Reverse (-)
80580476 .. 80581672
1197 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG575500.1

Sequence Viewer

Length: 873 bp
ATGCCTTACTGGAAAACGGGAGGACCAGGTGAGTTTTTCAGGTCAGTTCAAATGCCTCGGGTAGTAACTTACTTATTATCAAATTTCAGCAACAGCACTATTACAAGTATACAGATTGGTAAGTTCAACAAGAGCACTGTTACTAGTCCTCCCCAATTTGATTACACTCATGCAAGATTGGTGATATCCCATAGTGGAGAGCTGAAGATTTCAACATGGATTGAAGACTTGCAGTGGGTTCCGGTTTGGTCAGAGCCAAAAGATCAATGCAGTGTGTATAATGCTTGTGGGAACTTTGGCAGCTGTAATACTAATAATAACCCGGTGGTGTGCAAATGTTTGCCAGGTTTTAAGCCCCAGTCTCTAGATAAATGGACTTCTGGAGACTTCTCAGATGGATGCACAAGAGACTTGTCAATATGTGGGCATGATGACACCTTTTTGAGTTTGAAGATGATGAAAGTGGGAAACCCAGACACAGAGATTGTTGTTTACGATGAAATAGAATGCAAGAACAAGTGCCTCAACAGCTGCCAGTGCCAGGCATACTCATATGCTGCCGCACCTGTAAGAATAACTCAAAGGGATCTTCGTCAAACTTCCTTGTGCAGGGTATGGCTTAAGGACTTAAATAATCTTGTGGAAGAGTATGACAATAGTCATGACATTGCTGCTCGAGTTGCCTTGTCTGATATAGAATCAACTATAAGAGACTGCAACCCTTGTGGCACAACTACAATTCCTTATCCTCTGAGCACTAGATCAGATTGTGGCGACCCCATGTACTTAAGTTTCGCGTGCAATGCCTCCATTAATGAATTTAGCTTCCTGGGACCAGATGGCACCTCCTTTAGAGTTGGTGTAGCTCTCTGA

Protein Analysis

290

Amino Acids

32.3

Weight (kDa)

5.26

Isoelectric Point (pI)

39.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
S_locus_glycop PF00954 41 - 120 1.4e-20 S-locus glycoprotein domain
PAN_2 PF08276 141 - 212 4.1e-12 PAN-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000412)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03230 AT4G03230 AT4G03230 AT4G03230 AT4G03230 AT4G03230 AT4G03230 AT4G03230
fragaria_vesca FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44244 FvH4_6g44245 FvH4_6g44245 FvH4_6g44260
malus_domestica MD04G1084700.v1.1 MD09G1099700.v1.1 MD09G1099800.v1.1 MD09G1099900.v1.1 MD09G1100000.v1.1 MD09G1100100.v1.1 MD17G1087900.v1.1
prunus_persica Prupe.3G226000_v2.0.a1 Prupe.3G226200_v2.0.a1 Prupe.3G226300_v2.0.a1 Prupe.3G226300_v2.0.a1 Prupe.3G226600_v2.0.a1 Prupe.3G226700_v2.0.a1
pyrus_communis pycom02g23070 pycom07g15320 pycom09g02310 pycom09g02330 pycom09g02340 pycom09g02350 pycom09g02360 pycom09g02400 pycom09g02410 pycom09g02430 pycom10g07020 pycom17g08490
rosa_chinensis RchiOBHm_Chr1g0328701 RchiOBHm_Chr2g0161021 RchiOBHm_Chr2g0161031 RchiOBHm_Chr2g0161081 RchiOBHm_Chr2g0161101
rosa_laevigata RLG00000021249 RLG00000021250 RLG00000021251 RLG00000021253 RLG00000021257 RLG00000029922
rosa_multiflora Rmu_sc0000955.1_g000023 Rmu_sc0000955.1_g000025 Rmu_sc0000955.1_g000041 Rmu_sc0002312.1_g000012 Rmu_sc0002481.1_g000021 Rmu_sc0002481.1_g000026 Rmu_sc0002481.1_g000028 Rmu_sc0002481.1_g000039 Rmu_sc0006420.1_g000017
rosa_roxburghii Rroxscaffold_2G00089160 Rroxscaffold_2G00089200 Rroxscaffold_2G00089220 Rroxscaffold_2G00089270 Rroxscaffold_2G00089300 Rroxscaffold_4G00321430
rosa_rugosa Rorug02G0485900 Rorug02G0486100 Rorug03G0345100
rosa_samantha Rh1AG094100 Rh1DG097200 Rh2AG552000 Rh2AG552100 Rh2AG552200 Rh2AG552300 Rh2AG552500 Rh2BG566400 Rh2BG566500 Rh2CG535800 Rh2CG535900 Rh2CG536100 Rh2CG536200 Rh2DG575000 Rh2DG575100 Rh2DG575400 Rh2DG575500 Rh2DG575600 Rh4AG077200 Rh4CG082400
rosa_wichuraiana Rw2G045690 Rw2G045700 Rw2G045710 Rw4G006230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 842
AccI GTMKAC 1 cut(s) 109
AccII CGCG 1 cut(s) 797
AciI CCGC 1 cut(s) 561
AclWI GGATC 1 cut(s) 594
AcsI RAATTY 2 cut(s) 82, 818
AcuI CTGAAG 1 cut(s) 224
AfaI GTAC 1 cut(s) 785
AfiI CCNNNNNNNGG 2 cut(s) 541, 609
AflII CTTAAG 2 cut(s) 620, 787
AgsI TTSAA 5 cut(s) 50, 127, 213, 224, 451
AhlI ACTAGT 1 cut(s) 143
AjnI CCWGG 4 cut(s) 25, 343, 540, 828
AluBI AGCT 5 cut(s) 202, 303, 531, 825, 866
AluI AGCT 5 cut(s) 202, 303, 531, 825, 866
Alw21I GWGCWC 2 cut(s) 137, 758
Alw26I GTCTC 4 cut(s) 366, 378, 402, 705
AlwI GGATC 1 cut(s) 594
Ama87I CYCGRG 2 cut(s) 57, 675
ApeKI GCWGC 4 cut(s) 300, 531, 557, 671
ApoI RAATTY 2 cut(s) 82, 818
AseI ATTAAT 1 cut(s) 813
AspS9I GGNCC 2 cut(s) 23, 833
AsuC2I CCSGG 1 cut(s) 323
AsuHPI GGTGA 2 cut(s) 41, 193
AvaI CYCGRG 2 cut(s) 57, 675
AvaII GGWCC 2 cut(s) 23, 833
BanI GGYRCC 1 cut(s) 842
BbsI GAAGAC 1 cut(s) 231
Bbv12I GWGCWC 2 cut(s) 137, 758
BbvI GCAGC 4 cut(s) 312, 518, 544, 658
BccI CCATC 2 cut(s) 389, 833
BciT130I CCWGG 4 cut(s) 27, 345, 542, 830
BcnI CCSGG 1 cut(s) 323
BcoDI GTCTC 4 cut(s) 366, 378, 402, 705
BcuI ACTAGT 1 cut(s) 143
BfaI CTAG 3 cut(s) 144, 365, 759
BfrI CTTAAG 2 cut(s) 620, 787
BisI GCNGC 5 cut(s) 301, 532, 558, 561, 672
BlsI GCNGC 5 cut(s) 302, 533, 559, 562, 673
Bme1390I CCNGG 5 cut(s) 27, 323, 345, 542, 830
Bme18I GGWCC 2 cut(s) 23, 833
BmeT110I CYCGRG 2 cut(s) 57, 675
BmgT120I GGNCC 2 cut(s) 23, 833
BmiI GGNNCC 3 cut(s) 240, 834, 844
BmrFI CCNGG 5 cut(s) 27, 323, 345, 542, 830
BmrI ACTGGG 1 cut(s) 352
BmsI GCATC 1 cut(s) 389
BmuI ACTGGG 1 cut(s) 352
BoxI GACNNNNGTC 1 cut(s) 657
BpiI GAAGAC 1 cut(s) 231
BpmI CTGGAG 1 cut(s) 402
BpuMI CCSGG 1 cut(s) 323
BsaJI CCNNGG 2 cut(s) 56, 829
BsaWI WCCGGW 1 cut(s) 241
BsaXI ACNNNNNCTCC 2 cut(s) 133, 163
Bsc4I CCNNNNNNNGG 2 cut(s) 541, 609
Bse1I ACTGG 3 cut(s) 14, 358, 535
Bse3DI GCAATG 2 cut(s) 666, 808
BseBI CCWGG 4 cut(s) 27, 345, 542, 830
BseDI CCNNGG 2 cut(s) 56, 829
BseGI GGATG 1 cut(s) 404
BseLI CCNNNNNNNGG 2 cut(s) 541, 609
BseMI GCAATG 2 cut(s) 666, 808
BseMII CTCAG 2 cut(s) 405, 743
BseNI ACTGG 3 cut(s) 14, 358, 535
BseXI GCAGC 4 cut(s) 312, 518, 544, 658
BsgI GTGCAG 1 cut(s) 628
Bsh1236I CGCG 1 cut(s) 797
BshNI GGYRCC 1 cut(s) 842
BsiHKAI GWGCWC 2 cut(s) 137, 758
BsiHKCI CYCGRG 2 cut(s) 57, 675
BsiSI CCGG 2 cut(s) 242, 323
BslFI GGGAC 1 cut(s) 846
BslI CCNNNNNNNGG 2 cut(s) 541, 609
BsmAI GTCTC 4 cut(s) 366, 378, 402, 705
BsmFI GGGAC 1 cut(s) 846
BsmI GAATGC 1 cut(s) 512
BsoBI CYCGRG 2 cut(s) 57, 675
Bsp1286I GDGCHC 2 cut(s) 137, 758
Bsp143I GATC 3 cut(s) 262, 586, 761
BspACI CCGC 1 cut(s) 561
BspCNI CTCAG 2 cut(s) 404, 744
BspFNI CGCG 1 cut(s) 797
BspHI TCATGA 1 cut(s) 661
BspLI GGNNCC 3 cut(s) 240, 834, 844
BspPI GGATC 1 cut(s) 594
BspT107I GGYRCC 1 cut(s) 842
BspTI CTTAAG 2 cut(s) 620, 787
BsrDI GCAATG 2 cut(s) 666, 808
BsrI ACTGG 3 cut(s) 14, 358, 535
BssECI CCNNGG 2 cut(s) 56, 829
BssMI GATC 3 cut(s) 262, 586, 761
BssNAI GTATAC 1 cut(s) 110
Bst1107I GTATAC 1 cut(s) 110
Bst2UI CCWGG 4 cut(s) 27, 345, 542, 830
Bst4CI ACNGT 1 cut(s) 139
Bst6I CTCTTC 1 cut(s) 639
BstAFI CTTAAG 2 cut(s) 620, 787
BstC8I GCNNGC 1 cut(s) 799
BstDEI CTNAG 2 cut(s) 391, 752
BstENI CCTNNNNNAGG 1 cut(s) 607
BstF5I GGATG 1 cut(s) 404
BstFNI CGCG 1 cut(s) 797
BstKTI GATC 3 cut(s) 265, 589, 764
BstMAI GTCTC 4 cut(s) 366, 378, 402, 705
BstMBI GATC 3 cut(s) 262, 586, 761
BstMWI GCNNNNNNNGC 4 cut(s) 528, 537, 680, 803
BstNI CCWGG 4 cut(s) 27, 345, 542, 830
BstPAI GACNNNNGTC 1 cut(s) 657
BstSCI CCNGG 5 cut(s) 25, 321, 343, 540, 828
BstUI CGCG 1 cut(s) 797
BstV1I GCAGC 4 cut(s) 312, 518, 544, 658
BstV2I GAAGAC 1 cut(s) 231
BstX2I RGATCY 1 cut(s) 586
BstYI RGATCY 1 cut(s) 586
BstZ17I GTATAC 1 cut(s) 110
BtsCI GGATG 1 cut(s) 404
BtsI GCAGTG 2 cut(s) 239, 277
BtsIMutI CAGTG 4 cut(s) 135, 239, 277, 542
Cac8I GCNNGC 1 cut(s) 799
CciI TCATGA 1 cut(s) 661
Cfr13I GGNCC 2 cut(s) 23, 833
CsiI ACCWGGT 1 cut(s) 25
Csp6I GTAC 1 cut(s) 784
CspCI CAANNNNNGTGG 2 cut(s) 706, 741
CviAII CATG 5 cut(s) 170, 216, 428, 662, 781
CviJI RGCY 8 cut(s) 202, 256, 303, 355, 531, 619, 825, 866
CviKI_1 RGCY 8 cut(s) 202, 256, 303, 355, 531, 619, 825, 866
CviQI GTAC 1 cut(s) 784
DdeI CTNAG 2 cut(s) 391, 752
DpnI GATC 3 cut(s) 264, 588, 763
DpnII GATC 3 cut(s) 262, 586, 761
Eam1104I CTCTTC 1 cut(s) 639
EarI CTCTTC 1 cut(s) 639
Eco32I GATATC 1 cut(s) 186
Eco47I GGWCC 2 cut(s) 23, 833
Eco57I CTGAAG 1 cut(s) 224
Eco88I CYCGRG 2 cut(s) 57, 675
EcoNI CCTNNNNNAGG 1 cut(s) 607
EcoRII CCWGG 4 cut(s) 25, 343, 540, 828
EcoRV GATATC 1 cut(s) 186
FaeI CATG 5 cut(s) 173, 219, 431, 665, 784
FaqI GGGAC 1 cut(s) 846
FatI CATG 5 cut(s) 169, 215, 427, 661, 780
FauNDI CATATG 1 cut(s) 553
FblI GTMKAC 1 cut(s) 109
Fnu4HI GCNGC 5 cut(s) 301, 532, 558, 561, 672
FokI GGATG 1 cut(s) 411
Fsp4HI GCNGC 5 cut(s) 301, 532, 558, 561, 672
FspBI CTAG 3 cut(s) 144, 365, 759
GluI GCNGC 5 cut(s) 301, 532, 558, 561, 672
GsuI CTGGAG 1 cut(s) 402
HapII CCGG 2 cut(s) 242, 323
Hin1II CATG 5 cut(s) 173, 219, 431, 665, 784
HinfI GANTC 1 cut(s) 698
HpaII CCGG 2 cut(s) 242, 323
HphI GGTGA 2 cut(s) 41, 193
Hpy166II GTNNAC 2 cut(s) 110, 493
Hpy188I TCNGA 6 cut(s) 253, 394, 691, 753, 766, 872
Hpy188III TCNNGA 3 cut(s) 365, 381, 662
Hpy8I GTNNAC 2 cut(s) 110, 493
HpyCH4III ACNGT 1 cut(s) 139
HpyCH4V TGCA 9 cut(s) 173, 232, 270, 333, 402, 510, 609, 717, 801
HpyF10VI GCNNNNNNNGC 4 cut(s) 528, 537, 680, 803
HpyF3I CTNAG 2 cut(s) 391, 752
Hsp92II CATG 5 cut(s) 173, 219, 431, 665, 784
Kzo9I GATC 3 cut(s) 262, 586, 761
Lsp1109I GCAGC 4 cut(s) 312, 518, 544, 658
LweI GCATC 1 cut(s) 389
MabI ACCWGGT 1 cut(s) 25
MaeI CTAG 3 cut(s) 144, 365, 759
MaeIII GTNAC 2 cut(s) 64, 139
MalI GATC 3 cut(s) 264, 588, 763
MboI GATC 3 cut(s) 262, 586, 761
MboII GAAGA 5 cut(s) 217, 236, 463, 581, 656
MflI RGATCY 1 cut(s) 586
MhlI GDGCHC 2 cut(s) 137, 758
MluCI AATT 4 cut(s) 82, 155, 738, 818
MnlI CCTC 7 cut(s) 14, 66, 159, 533, 759, 817, 856
MseI TTAA 5 cut(s) 351, 621, 629, 788, 813
MspA1I CMGCKG 2 cut(s) 303, 531
MspCI CTTAAG 2 cut(s) 620, 787
MspI CCGG 2 cut(s) 242, 323
MspR9I CCNGG 5 cut(s) 27, 323, 345, 542, 830
Mva1269I GAATGC 1 cut(s) 512
MvaI CCWGG 4 cut(s) 27, 345, 542, 830
MvnI CGCG 1 cut(s) 797
MwoI GCNNNNNNNGC 4 cut(s) 528, 537, 680, 803
NciI CCSGG 1 cut(s) 323
NdeI CATATG 1 cut(s) 553
NdeII GATC 3 cut(s) 262, 586, 761
NlaIII CATG 5 cut(s) 173, 219, 431, 665, 784
NlaIV GGNNCC 3 cut(s) 240, 834, 844
PaeR7I CTCGAG 1 cut(s) 675
PagI TCATGA 1 cut(s) 661
PctI GAATGC 1 cut(s) 512
PfeI GAWTC 1 cut(s) 698
PkrI GCNGC 5 cut(s) 302, 533, 559, 562, 673
PshAI GACNNNNGTC 1 cut(s) 657
PshBI ATTAAT 1 cut(s) 813
Psp6I CCWGG 4 cut(s) 25, 343, 540, 828
PspGI CCWGG 4 cut(s) 25, 343, 540, 828
PspN4I GGNNCC 3 cut(s) 240, 834, 844
PspPI GGNCC 2 cut(s) 23, 833
PspXI VCTCGAGB 1 cut(s) 675
PsuI RGATCY 1 cut(s) 586
PvuII CAGCTG 2 cut(s) 303, 531
RsaI GTAC 1 cut(s) 785
RsaNI GTAC 1 cut(s) 784
SaqAI TTAA 5 cut(s) 351, 621, 629, 788, 813
SatI GCNGC 5 cut(s) 301, 532, 558, 561, 672
Sau3AI GATC 3 cut(s) 262, 586, 761
Sau96I GGNCC 2 cut(s) 23, 833
ScrFI CCNGG 5 cut(s) 27, 323, 345, 542, 830
SduI GDGCHC 2 cut(s) 137, 758
SexAI ACCWGGT 1 cut(s) 25
SfaNI GCATC 1 cut(s) 389
Sfr274I CTCGAG 1 cut(s) 675
SinI GGWCC 2 cut(s) 23, 833
SlaI CTCGAG 1 cut(s) 675
SmlI CTYRAG 3 cut(s) 620, 675, 787
SmoI CTYRAG 3 cut(s) 620, 675, 787
SpeI ACTAGT 1 cut(s) 143
Sse9I AATT 4 cut(s) 82, 155, 738, 818
SsiI CCGC 1 cut(s) 561
SspMI CTAG 3 cut(s) 144, 365, 759
StyD4I CCNGG 5 cut(s) 25, 321, 343, 540, 828
TaaI ACNGT 1 cut(s) 139
TaqI TCGA 1 cut(s) 676
TasI AATT 4 cut(s) 82, 155, 738, 818
TatI WGTACW 1 cut(s) 783
TauI GCSGC 1 cut(s) 563
TfiI GAWTC 1 cut(s) 698
Tru1I TTAA 5 cut(s) 351, 621, 629, 788, 813
Tru9I TTAA 5 cut(s) 351, 621, 629, 788, 813
TscAI CASTG 4 cut(s) 142, 239, 277, 542
TseI GCWGC 4 cut(s) 300, 531, 557, 671
TspDTI ATGAA 3 cut(s) 473, 513, 831
TspRI CASTG 4 cut(s) 142, 239, 277, 542
Vha464I CTTAAG 2 cut(s) 620, 787
VpaK11BI GGWCC 2 cut(s) 23, 833
VspI ATTAAT 1 cut(s) 813
XagI CCTNNNNNAGG 1 cut(s) 607
XapI RAATTY 2 cut(s) 82, 818
XbaI TCTAGA 1 cut(s) 364
XhoI CTCGAG 1 cut(s) 675
XmiI GTMKAC 1 cut(s) 109
XspI CTAG 3 cut(s) 144, 365, 759
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.