Rw2G045690

divergent subfamily of APPLE domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000412
Physical Location & Seq
Reverse (-)
72770299 .. 72774565
4267 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G045690.1

Sequence Viewer

Length: 3063 bp
ATGTTCACTAACTTCTTTCTGTATTCATTCCTGTTATGCACTTTTCTTCATTGTTTCATTGCTAAAGATACAATAGCATATAACAGTTTGATTAGTGATGACAAAGGTGATACTATTGTTTCATCAGGAGAAAAATTTGAACTTGGGTTCTTTACTCCTAATGGAAGCTCTGGTACTAGAAGATATGTTGGAATTTGGTATTACAGATCGAATCCACAGACTGTTGTTTGGCTTGCAAATAGAGACAACCCTCTTTCAGATACTCGTGGAGTTTTCACTATTGCAGAAGATGGAAATCTTAAGGTGCTGGATGGCAAAAGAAAAACCTACTGGTCATCAAGTCTTGAAAGTTCATCATCAACAATTAGGACAGCAAAGCTCATGGACACCGGTAATCTTGTTGTGATCAATAGAGAGCAAGGAAACAACTCGGTTCAAATTGTCTGGCAGAGTTTTGAAAATCCAACCGACACATTTCTTCCTGGCATGAAAATGAGCGGAAAATTAGTACTGAGTTCGTGGAAGAGTTACAATGATCCAGCAACAGGAAATTTCACATTTCAGCAAGACCAAGAGGATGCGAACCACTTTGTTATCTGGAAAAGATCGAGAAGGTACTGGAAGAGTGAAGATTATGGAAACTTCATTAGTTCTGATGAGATGGCTTCTGCAATTCTCTACTTGCTATCAAACTTCACCTCTACAGCAGTCCACAATGACTCTGTGCCATATCTCACATCCTCATTATACACTTCTACAAGGCTGGTTATGAGTTTTTCAGGCCAGATTCAGTATCTGATGTGGGATAGTGAGAAGGTTTGGTCTTTGATATGGGCAGATCCTAGAGATAGATGCAGTGTGTATAATGCATGTGGAAATTTTGGTAGCTGTAACAGCAAAAATGGTTTGGTTTGCAAGTGTTTGCCTGGTTTTAAGCCTAGTTCACCGGATAATTGGAATCATGGAGATTATTCGGGCGGATGCACTAGGAAGTCAACATTATGTGGCAGCAATGCTGAGAGTGACACATTCTTGAGCTTAAAGATGATGAAAGTGGGAAATCCAGATTCCCAATTTAATGCCAAAAGTGAAGTGGAATGCAGAGTAGAGTGCCTTAACAACTGTGAGTGTCAAGCTTATTTCTATGAAGAGGTGGAGAACAAAAAAAGGGGTGGGAGTAGTAGTTCAACATGTTGGATTTGGTCACAAGATGTCACCAATCTTCAGGAGGACTATGACGGTGGCCAGAATCTACAGGTTCGTGTAGCAGTTTCAGATATAGAATCAACAGCGAGAAGCTGTGGAAGTTGTGGCACAAACCTGATCCCTTATCCCTTAAGCACTGGACCAAAGTGTGGTGATGTCACCTACTATAGTTTCCACTGCAATATTTCAACTGGCCAGCTGAGCTTTGAGGCACCAAGCAGCACCTACCATGTCACAAGCATCAACGCAGACACACAAACATTTGTCATCCAAGCTAATGATGCAGATGAATGTAGAGATAAAAAATTTCTGAAGCTCATACAGTCTTCTCCATATAATGTGACAAACATGTGCAATGCTGATCCGACCCGTTTTAGTCCTGATTTGTCATTTAAAGGAGGATATGAAGTTGAAGTTGCTTGGGAGTCACCCTTGGAACCACCTTGTTCCTCTTCTACAGACTGCAAGGACTGGCCTCGTTCGATATGTGATGCTGCTCTAGATGGGAAGAATAGGTGTCTTTGCCCTGCAAACTCAAAATGGGATAGCAGGAGTTTAAATTGTACTCAAGAAGTTGGCCACAGAAAGCAAACTGGTGAGCAAGGGAAGATGACCCTAGCTCTAATCATTGCAGTAACTTGTATAAGTGTAGCTGTTCTAGCAATTCTTTCAAGTACCTTTGTTTATGCTTATATATGGAGAAGAAGGCGCATTAAGACACAAGAAGGCAGGGCAAATCTTCAAAAGTGTTCAACACTTAATCACTTTTATGACTGTGAGAGAAAAGTCAAGAACTTGATTGAATCAGGCCGATTTAAGGATGACGATACGGAGGGCATTGATGTACCCTCTTTTGATTTGGAAAGCATACTGGTAGCTACAACATACTTCTCCAATGCAAATAAACTTGGACAAGGAGGATTTGGTCCTGTTTACAAGGGTAAGCTTCCAGGAGGAGAAGAAATCGCTGTAAAGAGGCTCTCGAGTTGTTCAGGCCAAGGCTTAGAGGAATTCAAAAATGAAGTTTTGTTAATTGCCAAACTTCAACATCGGAATCTGGTTCGACTTTTGGGCTATTGTGCTGAGGGAGATGAAAAGATGTTAATCTATGAATACATGGCCAACAAAAGCTTAGACTCTTTCATCTTTGATCGAAAAGTATGTGTATCATTGGACTGGAATACACGCTTTAACATCATCTTAGGAATTGCTCGGGGGCTTCTTTATCTTCACCAAGATTCTAGATTAAGGGTTATTCATAGAGATCTGAAAACCAGCAACATTCTACTGAGTGAAGAGATGAACCCCAAAATATCAGACTTCGGTTTGGCAAGGATCTTTGGAGGCAATGAAACTTCAGCAAACACCAATAGAGTAGTGGGAACATACGGCTATATGTCTCCAGAGTATGCATTAGATGGGTTATTCTCAGTAAAATCTGATGTTTTTAGCTTTGGTGTAGTTGTGATTGAAATCATCACTGGGAAAAGGAACACAGGATTTTATCAGCCTGAAAGATCTTTGAGTCTTCTTGGCTATGCATGGCATTTGTGGAAAGAACAAAAGGCGTTAGATTTGCTAGAACAAACACTTGGTCACAGCTGCAACAAGGATGAGTACTTCAAGTGTGTTAATGTTGGGCTCTTATGTGTACAAGAAGACCCAGGTGATCGGCCAACCATGTCACAAGTAGTTTTCATGCTCGGAAGTGAAACTGCAACGATTCCAACCCCTAAACAACCCGCTTTCGTTGTTAGGCGATGCCCTTCTAGTTCTAGCAGGGCTTCTAATTCTTCAAGCAAACCAGAAACGGTTTCAAACAACGAGTTAACTGTCACCTTAGAAGATGGTCGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin GUB_WAK_bind PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

1020

Amino Acids

114.11

Weight (kDa)

6.03

Isoelectric Point (pI)

47.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 74 - 168 1.3e-29 D-mannose binding lectin
S_locus_glycop PF00954 214 - 314 1.8e-22 S-locus glycoprotein domain
PAN_2 PF08276 338 - 407 2e-10 PAN-like domain
GUB_WAK_bind PF13947 435 - 492 3.1e-06 Wall-associated receptor kinase galacturonan-binding
Pkinase PF00069 700 - 966 6.7e-43 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 702 - 968 2.1e-48 Protein tyrosine and serine/threonine kinase
DUF3403 PF11883 972 - 1020 3.6e-07 Domain of unknown function (DUF3403)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000412)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03230 AT4G03230 AT4G03230 AT4G03230 AT4G03230 AT4G03230 AT4G03230 AT4G03230
fragaria_vesca FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44244 FvH4_6g44245 FvH4_6g44245 FvH4_6g44260
malus_domestica MD04G1084700.v1.1 MD09G1099700.v1.1 MD09G1099800.v1.1 MD09G1099900.v1.1 MD09G1100000.v1.1 MD09G1100100.v1.1 MD17G1087900.v1.1
prunus_persica Prupe.3G226000_v2.0.a1 Prupe.3G226200_v2.0.a1 Prupe.3G226300_v2.0.a1 Prupe.3G226300_v2.0.a1 Prupe.3G226600_v2.0.a1 Prupe.3G226700_v2.0.a1
pyrus_communis pycom02g23070 pycom07g15320 pycom09g02310 pycom09g02330 pycom09g02340 pycom09g02350 pycom09g02360 pycom09g02400 pycom09g02410 pycom09g02430 pycom10g07020 pycom17g08490
rosa_chinensis RchiOBHm_Chr1g0328701 RchiOBHm_Chr2g0161021 RchiOBHm_Chr2g0161031 RchiOBHm_Chr2g0161081 RchiOBHm_Chr2g0161101
rosa_laevigata RLG00000021249 RLG00000021250 RLG00000021251 RLG00000021253 RLG00000021257 RLG00000029922
rosa_multiflora Rmu_sc0000955.1_g000023 Rmu_sc0000955.1_g000025 Rmu_sc0000955.1_g000041 Rmu_sc0002312.1_g000012 Rmu_sc0002481.1_g000021 Rmu_sc0002481.1_g000026 Rmu_sc0002481.1_g000028 Rmu_sc0002481.1_g000039 Rmu_sc0006420.1_g000017
rosa_roxburghii Rroxscaffold_2G00089160 Rroxscaffold_2G00089200 Rroxscaffold_2G00089220 Rroxscaffold_2G00089270 Rroxscaffold_2G00089300 Rroxscaffold_4G00321430
rosa_rugosa Rorug02G0485900 Rorug02G0486100 Rorug03G0345100
rosa_samantha Rh1AG094100 Rh1DG097200 Rh2AG552000 Rh2AG552100 Rh2AG552200 Rh2AG552300 Rh2AG552500 Rh2BG566400 Rh2BG566500 Rh2CG535800 Rh2CG535900 Rh2CG536100 Rh2CG536200 Rh2DG575000 Rh2DG575100 Rh2DG575400 Rh2DG575500 Rh2DG575600 Rh4AG077200 Rh4CG082400
rosa_wichuraiana Rw2G045690 Rw2G045700 Rw2G045710 Rw4G006230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1417
AccB7I CCANNNNNTGG 1 cut(s) 1355
AccBSI CCGCTC 1 cut(s) 498
AciI CCGC 3 cut(s) 498, 978, 2949
AclWI GGATC 5 cut(s) 530, 833, 1318, 1562, 2549
AcoI YGGCCR 5 cut(s) 1243, 1399, 1783, 2325, 2879
AcsI RAATTY 6 cut(s) 134, 192, 550, 877, 1511, 2216
AcuI CTGAAG 3 cut(s) 1208, 1538, 2547
AfaI GTAC 8 cut(s) 175, 510, 617, 1771, 1882, 2052, 2825, 2859
AfiI CCNNNNNNNGG 3 cut(s) 545, 1355, 2023
AflII CTTAAG 2 cut(s) 299, 1336
AflIII ACRYGT 2 cut(s) 1190, 1554
AgeI ACCGGT 1 cut(s) 389
AjnI CCWGG 4 cut(s) 481, 925, 2155, 2869
AjuI GAANNNNNNNTTGG 2 cut(s) 2781, 2813
AloI GAACNNNNNNTCC 2 cut(s) 1168, 1200
Alw26I GTCTC 2 cut(s) 237, 2610
AlwI GGATC 5 cut(s) 530, 833, 1318, 1562, 2549
AlwNI CAGNNNCTG 1 cut(s) 796
Ama87I CYCGRG 2 cut(s) 2188, 2418
AoxI GGCC 9 cut(s) 781, 1243, 1399, 1679, 1783, 2014, 2200, 2325, 2879
ApeKI GCWGC 4 cut(s) 1008, 1425, 1700, 2808
ApoI RAATTY 6 cut(s) 134, 192, 550, 877, 1511, 2216
ArsI GACNNNNNNTTYG 2 cut(s) 2785, 2817
AsiGI ACCGGT 1 cut(s) 389
AspLEI GCGC 1 cut(s) 1917
AspS9I GGNCC 2 cut(s) 1346, 2132
AvaI CYCGRG 2 cut(s) 2188, 2418
AvaII GGWCC 2 cut(s) 1346, 2132
BaeI ACNNNNGTAYC 2 cut(s) 102, 135
BalI TGGCCA 4 cut(s) 1245, 1401, 1785, 2327
BanI GGYRCC 1 cut(s) 1417
BanII GRGCYC 1 cut(s) 2850
BarI GAAGNNNNNNTAC 2 cut(s) 157, 189
BauI CACGAG 1 cut(s) 264
BbsI GAAGAC 3 cut(s) 1524, 2726, 2871
BbvCI CCTCAGC 1 cut(s) 2289
BbvI GCAGC 4 cut(s) 1020, 1437, 1687, 2795
BccI CCATC 6 cut(s) 284, 305, 655, 1703, 2618, 3047
BceAI ACGGC 1 cut(s) 2611
BciT130I CCWGG 4 cut(s) 483, 927, 2157, 2871
BclI TGATCA 1 cut(s) 405
BcoDI GTCTC 2 cut(s) 237, 2610
BfmI CTRYAG 4 cut(s) 702, 1253, 1372, 1662
BfrI CTTAAG 2 cut(s) 299, 1336
BglII AGATCT 2 cut(s) 2470, 2723
BisI GCNGC 4 cut(s) 1009, 1426, 1701, 2809
BlpI GCTNAGC 1 cut(s) 1406
BlsI GCNGC 4 cut(s) 1010, 1427, 1702, 2810
BmcAI AGTACT 2 cut(s) 510, 2825
Bme1390I CCNGG 4 cut(s) 483, 927, 2157, 2871
Bme18I GGWCC 2 cut(s) 1346, 2132
BmeT110I CYCGRG 2 cut(s) 2188, 2418
BmgT120I GGNCC 2 cut(s) 1346, 2132
BmiI GGNNCC 2 cut(s) 1419, 1644
BmrFI CCNGG 4 cut(s) 483, 927, 2157, 2871
BmrI ACTGGG 1 cut(s) 2697
BmsI GCATC 7 cut(s) 568, 842, 971, 1455, 1477, 1687, 2957
BmuI ACTGGG 1 cut(s) 2697
BpiI GAAGAC 3 cut(s) 1524, 2726, 2871
BpmI CTGGAG 1 cut(s) 2592
Bpu10I CCTNAGC 1 cut(s) 2289
Bpu1102I GCTNAGC 1 cut(s) 1406
BpuEI CTTGAG 2 cut(s) 1054, 1758
BsaBI GATNNNNATC 3 cut(s) 294, 2309, 2678
BsaJI CCNNGG 3 cut(s) 1638, 2203, 2869
BsaWI WCCGGW 2 cut(s) 389, 946
BsaXI ACNNNNNCTCC 2 cut(s) 1168, 1198
Bsc4I CCNNNNNNNGG 3 cut(s) 545, 1355, 2023
Bse118I RCCGGY 1 cut(s) 389
Bse1I ACTGG 9 cut(s) 335, 623, 1348, 1402, 1682, 1804, 2082, 2387, 2692
Bse3DI GCAATG 5 cut(s) 57, 1018, 1567, 1833, 2560
Bse8I GATNNNNATC 3 cut(s) 294, 2309, 2678
BseBI CCWGG 4 cut(s) 483, 927, 2157, 2871
BseDI CCNNGG 3 cut(s) 1638, 2203, 2869
BseGI GGATG 7 cut(s) 316, 583, 737, 986, 1473, 2032, 2824
BseJI GATNNNNATC 3 cut(s) 294, 2309, 2678
BseLI CCNNNNNNNGG 3 cut(s) 545, 1355, 2023
BseMI GCAATG 5 cut(s) 57, 1018, 1567, 1833, 2560
BseMII CTCAG 6 cut(s) 503, 1008, 1397, 2280, 2486, 2649
BseNI ACTGG 9 cut(s) 335, 623, 1348, 1402, 1682, 1804, 2082, 2387, 2692
BseRI GAGGAG 1 cut(s) 2175
BseXI GCAGC 4 cut(s) 1020, 1437, 1687, 2795
BshFI GGCC 9 cut(s) 783, 1245, 1401, 1681, 1785, 2016, 2202, 2327, 2881
BshNI GGYRCC 1 cut(s) 1417
BshTI ACCGGT 1 cut(s) 389
BsiHKCI CYCGRG 2 cut(s) 2188, 2418
BsiSI CCGG 2 cut(s) 390, 947
BslI CCNNNNNNNGG 3 cut(s) 545, 1355, 2023
BsmAI GTCTC 2 cut(s) 237, 2610
BsmI GAATGC 1 cut(s) 1103
BsnI GGCC 9 cut(s) 783, 1245, 1401, 1681, 1785, 2016, 2202, 2327, 2881
BsoBI CYCGRG 2 cut(s) 2188, 2418
Bsp1286I GDGCHC 1 cut(s) 2850
Bsp1407I TGTACA 1 cut(s) 2857
Bsp1720I GCTNAGC 1 cut(s) 1406
BspACI CCGC 3 cut(s) 498, 978, 2949
BspANI GGCC 9 cut(s) 783, 1245, 1401, 1681, 1785, 2016, 2202, 2327, 2881
BspCNI CTCAG 6 cut(s) 504, 1009, 1398, 2281, 2487, 2648
BspLI GGNNCC 2 cut(s) 1419, 1644
BspPI GGATC 5 cut(s) 530, 833, 1318, 1562, 2549
BspT107I GGYRCC 1 cut(s) 1417
BspTI CTTAAG 2 cut(s) 299, 1336
BsrBI CCGCTC 1 cut(s) 498
BsrDI GCAATG 5 cut(s) 57, 1018, 1567, 1833, 2560
BsrFI RCCGGY 1 cut(s) 389
BsrGI TGTACA 1 cut(s) 2857
BsrI ACTGG 9 cut(s) 335, 623, 1348, 1402, 1682, 1804, 2082, 2387, 2692
BssAI RCCGGY 1 cut(s) 389
BssECI CCNNGG 3 cut(s) 1638, 2203, 2869
BssSI CACGAG 1 cut(s) 264
BssT1I CCWWGG 2 cut(s) 1638, 2203
Bst2BI CACGAG 1 cut(s) 264
Bst2UI CCWGG 4 cut(s) 483, 927, 2157, 2871
Bst4CI ACNGT 8 cut(s) 86, 223, 1124, 1241, 1530, 1982, 3019, 3040
Bst6I CTCTTC 5 cut(s) 518, 617, 1143, 1663, 2496
BstAFI CTTAAG 2 cut(s) 299, 1336
BstAUI TGTACA 1 cut(s) 2857
BstC8I GCNNGC 2 cut(s) 234, 1403
BstF5I GGATG 7 cut(s) 316, 583, 737, 986, 1473, 2032, 2824
BstHHI GCGC 1 cut(s) 1917
BstMAI GTCTC 2 cut(s) 237, 2610
BstMWI GCNNNNNNNGC 4 cut(s) 894, 1407, 1487, 1865
BstNI CCWGG 4 cut(s) 483, 927, 2157, 2871
BstNSI RCATGY 3 cut(s) 873, 1194, 1558
BstSCI CCNGG 4 cut(s) 481, 925, 2155, 2869
BstSFI CTRYAG 4 cut(s) 702, 1253, 1372, 1662
BstV1I GCAGC 4 cut(s) 1020, 1437, 1687, 2795
BstV2I GAAGAC 3 cut(s) 1524, 2726, 2871
BstX2I RGATCY 4 cut(s) 838, 2470, 2541, 2723
BstYI RGATCY 4 cut(s) 838, 2470, 2541, 2723
BsuRI GGCC 9 cut(s) 783, 1245, 1401, 1681, 1785, 2016, 2202, 2327, 2881
BtgZI GCGATG 1 cut(s) 2980
BtsCI GGATG 7 cut(s) 316, 583, 737, 986, 1473, 2032, 2824
BtsI GCAGTG 2 cut(s) 862, 1381
BtsIMutI CAGTG 4 cut(s) 862, 1341, 1381, 2685
Cac8I GCNNGC 2 cut(s) 234, 1403
CaiI CAGNNNCTG 1 cut(s) 796
CfoI GCGC 1 cut(s) 1917
Cfr10I RCCGGY 1 cut(s) 389
Cfr13I GGNCC 2 cut(s) 1346, 2132
Csp6I GTAC 8 cut(s) 174, 509, 616, 1770, 1881, 2051, 2824, 2858
CspAI ACCGGT 1 cut(s) 389
CviQI GTAC 8 cut(s) 174, 509, 616, 1770, 1881, 2051, 2824, 2858
DraI TTTAAA 2 cut(s) 1600, 1764
EaeI YGGCCR 5 cut(s) 1243, 1399, 1783, 2325, 2879
Eam1104I CTCTTC 5 cut(s) 518, 617, 1143, 1663, 2496
EarI CTCTTC 5 cut(s) 518, 617, 1143, 1663, 2496
EciI GGCGGA 1 cut(s) 993
Eco130I CCWWGG 2 cut(s) 1638, 2203
Eco24I GRGCYC 1 cut(s) 2850
Eco47I GGWCC 2 cut(s) 1346, 2132
Eco57I CTGAAG 3 cut(s) 1208, 1538, 2547
Eco88I CYCGRG 2 cut(s) 2188, 2418
EcoRI GAATTC 1 cut(s) 2216
EcoRII CCWGG 4 cut(s) 481, 925, 2155, 2869
EcoT14I CCWWGG 2 cut(s) 1638, 2203
EcoT22I ATGCAT 3 cut(s) 871, 2620, 2749
EcoT38I GRGCYC 1 cut(s) 2850
ErhI CCWWGG 2 cut(s) 1638, 2203
FauI CCCGC 1 cut(s) 2956
FbaI TGATCA 1 cut(s) 405
Fnu4HI GCNGC 4 cut(s) 1009, 1426, 1701, 2809
FokI GGATG 7 cut(s) 323, 590, 724, 993, 1460, 2039, 2831
FriOI GRGCYC 1 cut(s) 2850
Fsp4HI GCNGC 4 cut(s) 1009, 1426, 1701, 2809
GlaI GCGC 1 cut(s) 1916
GluI GCNGC 4 cut(s) 1009, 1426, 1701, 2809
GsuI CTGGAG 1 cut(s) 2592
HaeIII GGCC 9 cut(s) 783, 1245, 1401, 1681, 1785, 2016, 2202, 2327, 2881
HapII CCGG 2 cut(s) 390, 947
HhaI GCGC 1 cut(s) 1917
Hin6I GCGC 1 cut(s) 1915
HinP1I GCGC 1 cut(s) 1915
HincII GTYRAC 2 cut(s) 996, 3036
HindII GTYRAC 2 cut(s) 996, 3036
HindIII AAGCTT 3 cut(s) 1134, 2150, 2335
HpaI GTTAAC 1 cut(s) 3036
HpaII CCGG 2 cut(s) 390, 947
Hpy166II GTNNAC 7 cut(s) 6, 712, 944, 996, 2140, 2858, 3036
Hpy8I GTNNAC 7 cut(s) 6, 712, 944, 996, 2140, 2858, 3036
HpyAV CCTTC 5 cut(s) 606, 808, 1905, 1925, 2982
HpyCH4III ACNGT 8 cut(s) 86, 223, 1124, 1241, 1530, 1982, 3019, 3040
HpyF10VI GCNNNNNNNGC 4 cut(s) 894, 1407, 1487, 1865
HspAI GCGC 1 cut(s) 1915
Ksp22I TGATCA 1 cut(s) 405
KspAI GTTAAC 1 cut(s) 3036
Lsp1109I GCAGC 4 cut(s) 1020, 1437, 1687, 2795
LweI GCATC 7 cut(s) 568, 842, 971, 1455, 1477, 1687, 2957
MbiI CCGCTC 1 cut(s) 498
MflI RGATCY 4 cut(s) 838, 2470, 2541, 2723
MhlI GDGCHC 1 cut(s) 2850
MlsI TGGCCA 4 cut(s) 1245, 1401, 1785, 2327
MluNI TGGCCA 4 cut(s) 1245, 1401, 1785, 2327
MlyI GAGTC 4 cut(s) 713, 1640, 2336, 2740
MmeI TCCRAC 5 cut(s) 169, 488, 1175, 1595, 2957
Mox20I TGGCCA 4 cut(s) 1245, 1401, 1785, 2327
Mph1103I ATGCAT 3 cut(s) 871, 2620, 2749
MscI TGGCCA 4 cut(s) 1245, 1401, 1785, 2327
MslI CAYNNNNRTG 2 cut(s) 491, 1974
Msp20I TGGCCA 4 cut(s) 1245, 1401, 1785, 2327
MspA1I CMGCKG 2 cut(s) 1405, 2808
MspCI CTTAAG 2 cut(s) 299, 1336
MspI CCGG 2 cut(s) 390, 947
MspR9I CCNGG 4 cut(s) 483, 927, 2157, 2871
Mva1269I GAATGC 1 cut(s) 1103
MvaI CCWGG 4 cut(s) 483, 927, 2157, 2871
MwoI GCNNNNNNNGC 4 cut(s) 894, 1407, 1487, 1865
NlaIV GGNNCC 2 cut(s) 1419, 1644
NsiI ATGCAT 3 cut(s) 871, 2620, 2749
NspI RCATGY 3 cut(s) 873, 1194, 1558
PaeR7I CTCGAG 1 cut(s) 2188
PciI ACATGT 2 cut(s) 1190, 1554
PctI GAATGC 1 cut(s) 1103
PflMI CCANNNNNTGG 1 cut(s) 1355
PfoI TCCNGGA 1 cut(s) 2155
PinAI ACCGGT 1 cut(s) 389
PkrI GCNGC 4 cut(s) 1010, 1427, 1702, 2810
PleI GAGTC 4 cut(s) 713, 1639, 2336, 2739
PpsI GAGTC 4 cut(s) 713, 1639, 2336, 2739
PscI ACATGT 2 cut(s) 1190, 1554
Psp6I CCWGG 4 cut(s) 481, 925, 2155, 2869
PspGI CCWGG 4 cut(s) 481, 925, 2155, 2869
PspN4I GGNNCC 2 cut(s) 1419, 1644
PspPI GGNCC 2 cut(s) 1346, 2132
PstNI CAGNNNCTG 1 cut(s) 796
PsuI RGATCY 4 cut(s) 838, 2470, 2541, 2723
PvuII CAGCTG 2 cut(s) 1405, 2808
RsaI GTAC 8 cut(s) 175, 510, 617, 1771, 1882, 2052, 2825, 2859
RsaNI GTAC 8 cut(s) 174, 509, 616, 1770, 1881, 2051, 2824, 2858
RseI CAYNNNNRTG 2 cut(s) 491, 1974
SatI GCNGC 4 cut(s) 1009, 1426, 1701, 2809
Sau96I GGNCC 2 cut(s) 1346, 2132
ScaI AGTACT 2 cut(s) 510, 2825
SchI GAGTC 4 cut(s) 713, 1640, 2336, 2740
ScrFI CCNGG 4 cut(s) 483, 927, 2157, 2871
SduI GDGCHC 1 cut(s) 2850
SfaNI GCATC 7 cut(s) 568, 842, 971, 1455, 1477, 1687, 2957
SfcI CTRYAG 4 cut(s) 702, 1253, 1372, 1662
Sfr274I CTCGAG 1 cut(s) 2188
SinI GGWCC 2 cut(s) 1346, 2132
SlaI CTCGAG 1 cut(s) 2188
SmiMI CAYNNNNRTG 2 cut(s) 491, 1974
SmlI CTYRAG 5 cut(s) 299, 1033, 1336, 1773, 2188
SmoI CTYRAG 5 cut(s) 299, 1033, 1336, 1773, 2188
SsiI CCGC 3 cut(s) 498, 978, 2949
SspI AATATT 1 cut(s) 1390
StyD4I CCNGG 4 cut(s) 481, 925, 2155, 2869
StyI CCWWGG 2 cut(s) 1638, 2203
TaaI ACNGT 8 cut(s) 86, 223, 1124, 1241, 1530, 1982, 3019, 3040
TaqI TCGA 7 cut(s) 209, 608, 1688, 2189, 2269, 2359, 3058
TatI WGTACW 4 cut(s) 508, 1769, 2823, 2857
TscAI CASTG 4 cut(s) 862, 1348, 1388, 2692
TseI GCWGC 4 cut(s) 1008, 1425, 1700, 2808
TspGWI ACGGA 1 cut(s) 2051
TspRI CASTG 4 cut(s) 862, 1348, 1388, 2692
Van91I CCANNNNNTGG 1 cut(s) 1355
Vha464I CTTAAG 2 cut(s) 299, 1336
VpaK11BI GGWCC 2 cut(s) 1346, 2132
XapI RAATTY 6 cut(s) 134, 192, 550, 877, 1511, 2216
XbaI TCTAGA 2 cut(s) 1705, 2447
XceI RCATGY 3 cut(s) 873, 1194, 1558
XcmI CCANNNNNNNNNTGG 2 cut(s) 1090, 2581
XhoI CTCGAG 1 cut(s) 2188
ZrmI AGTACT 2 cut(s) 510, 2825
Zsp2I ATGCAT 3 cut(s) 871, 2620, 2749
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.