Rroxscaffold_2G00089160

PAN-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000412
Physical Location & Seq
Reverse (-)
11064365 .. 11069334
4970 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00089160.1

Sequence Viewer

Length: 804 bp
ATGCCGATCCAGTTATTGATGAGGAATCAGGAACTCTTGTTTCAGCAGGAGAAAAAATTTGAATTGGGTTTCTTTACCCCTACTCCTATAGGGAAAAGTAACTCGGGCGCTGATAGCAGATATGTTGGCATATGGTATCATAAGGTCACTCCAAGAACAGTTGTATGGGTTGCCAACAGAGAAAAACCTCTGCCTGCCAATTCCACTGGAGTTCTCACAATCGAAGATGGTAACCTCCTCGTGTTGGATAATGTTACTGGAGAGCCTTATTGGTCCACAGACATTGGAACATCTTTGTCTTCTAACATGATTGTGAAGATAATGGAGTCTGGAAACCTGGTGTTAATGGATTCTGATCAGATGGCAGCGAATATTCTGTGGCAGAGCTTTCAAAACCCAACTGATACATTCATTCCTGGGATGCTAATGGATAAAAATTTTCAGTTGACTTCTTGGAGAGACAAAGATGACCCGAGACCGGGGAACTTCAACTTCAAACTCGATCAGAGTAAGAACCAGTATATCGTAATGAACAAGTCGCTTCCTTACTGGAAAAGTGGAGAGCCAGATAATCGTTTCAGCCCATATGAAGTGCCTCCTAAAGTAGCTGGCTTGCTATCATATTTCAACAGCAGCAGCAGCAGCACTGATACAAGTCGACCATCTATTAATTTTACAATTGTGCGACCTTTGGATTACAATTATGCACGGTTGGTGATAGATTTTACTGGAGAGTTACAGTTTTCCATTTGGAATGAAAGCAAGAAGGAGTGGTTTCCTTCATGGTCGGAGCCAAAAAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

267

Amino Acids

30.64

Weight (kDa)

5.59

Isoelectric Point (pI)

33.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 53 - 148 6.7e-27 D-mannose binding lectin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000412)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03230 AT4G03230 AT4G03230 AT4G03230 AT4G03230 AT4G03230 AT4G03230 AT4G03230
fragaria_vesca FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44244 FvH4_6g44245 FvH4_6g44245 FvH4_6g44260
malus_domestica MD04G1084700.v1.1 MD09G1099700.v1.1 MD09G1099800.v1.1 MD09G1099900.v1.1 MD09G1100000.v1.1 MD09G1100100.v1.1 MD17G1087900.v1.1
prunus_persica Prupe.3G226000_v2.0.a1 Prupe.3G226200_v2.0.a1 Prupe.3G226300_v2.0.a1 Prupe.3G226300_v2.0.a1 Prupe.3G226600_v2.0.a1 Prupe.3G226700_v2.0.a1
pyrus_communis pycom02g23070 pycom07g15320 pycom09g02310 pycom09g02330 pycom09g02340 pycom09g02350 pycom09g02360 pycom09g02400 pycom09g02410 pycom09g02430 pycom10g07020 pycom17g08490
rosa_chinensis RchiOBHm_Chr1g0328701 RchiOBHm_Chr2g0161021 RchiOBHm_Chr2g0161031 RchiOBHm_Chr2g0161081 RchiOBHm_Chr2g0161101
rosa_laevigata RLG00000021249 RLG00000021250 RLG00000021251 RLG00000021253 RLG00000021257 RLG00000029922
rosa_multiflora Rmu_sc0000955.1_g000023 Rmu_sc0000955.1_g000025 Rmu_sc0000955.1_g000041 Rmu_sc0002312.1_g000012 Rmu_sc0002481.1_g000021 Rmu_sc0002481.1_g000026 Rmu_sc0002481.1_g000028 Rmu_sc0002481.1_g000039 Rmu_sc0006420.1_g000017
rosa_roxburghii Rroxscaffold_2G00089160 Rroxscaffold_2G00089200 Rroxscaffold_2G00089220 Rroxscaffold_2G00089270 Rroxscaffold_2G00089300 Rroxscaffold_4G00321430
rosa_rugosa Rorug02G0485900 Rorug02G0486100 Rorug03G0345100
rosa_samantha Rh1AG094100 Rh1DG097200 Rh2AG552000 Rh2AG552100 Rh2AG552200 Rh2AG552300 Rh2AG552500 Rh2BG566400 Rh2BG566500 Rh2CG535800 Rh2CG535900 Rh2CG536100 Rh2CG536200 Rh2DG575000 Rh2DG575100 Rh2DG575400 Rh2DG575500 Rh2DG575600 Rh4AG077200 Rh4CG082400
rosa_wichuraiana Rw2G045690 Rw2G045700 Rw2G045710 Rw4G006230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 658
AcsI RAATTY 2 cut(s) 56, 436
AfiI CCNNNNNNNGG 3 cut(s) 244, 478, 479
AgsI TTSAA 5 cut(s) 62, 392, 490, 496, 628
AjnI CCWGG 2 cut(s) 336, 415
AluBI AGCT 2 cut(s) 387, 608
AluI AGCT 2 cut(s) 387, 608
Alw26I GTCTC 2 cut(s) 453, 469
Ama87I CYCGRG 2 cut(s) 103, 472
ApeKI GCWGC 5 cut(s) 365, 633, 636, 639, 642
ApoI RAATTY 2 cut(s) 56, 436
AseI ATTAAT 1 cut(s) 669
AspLEI GCGC 1 cut(s) 110
AspS9I GGNCC 1 cut(s) 273
AsuC2I CCSGG 1 cut(s) 480
AsuHPI GGTGA 1 cut(s) 727
AvaI CYCGRG 2 cut(s) 103, 472
AvaII GGWCC 1 cut(s) 273
BauI CACGAG 1 cut(s) 239
BbsI GAAGAC 1 cut(s) 291
BbvI GCAGC 5 cut(s) 377, 645, 648, 651, 654
BccI CCATC 3 cut(s) 221, 355, 670
BciT130I CCWGG 2 cut(s) 338, 417
BclI TGATCA 1 cut(s) 355
BcnI CCSGG 1 cut(s) 480
BcoDI GTCTC 2 cut(s) 453, 469
BfmI CTRYAG 1 cut(s) 87
BfoI RGCGCY 1 cut(s) 111
BisI GCNGC 5 cut(s) 366, 634, 637, 640, 643
BlsI GCNGC 5 cut(s) 367, 635, 638, 641, 644
Bme1390I CCNGG 3 cut(s) 338, 417, 480
Bme18I GGWCC 1 cut(s) 273
BmeT110I CYCGRG 2 cut(s) 103, 472
BmgT120I GGNCC 1 cut(s) 273
BmiI GGNNCC 1 cut(s) 792
BmrFI CCNGG 3 cut(s) 338, 417, 480
BmsI GCATC 1 cut(s) 411
BpiI GAAGAC 1 cut(s) 291
BpmI CTGGAG 3 cut(s) 228, 279, 750
BpuMI CCSGG 1 cut(s) 480
BsaBI GATNNNNATC 1 cut(s) 354
BsaI GGTCTC 1 cut(s) 469
BsaJI CCNNGG 2 cut(s) 416, 479
BsaXI ACNNNNNCTCC 2 cut(s) 67, 97
Bsc4I CCNNNNNNNGG 3 cut(s) 244, 478, 479
Bse1I ACTGG 6 cut(s) 10, 211, 262, 517, 554, 733
Bse8I GATNNNNATC 1 cut(s) 354
BseBI CCWGG 2 cut(s) 338, 417
BseDI CCNNGG 2 cut(s) 416, 479
BseGI GGATG 1 cut(s) 426
BseJI GATNNNNATC 1 cut(s) 354
BseLI CCNNNNNNNGG 3 cut(s) 244, 478, 479
BseNI ACTGG 6 cut(s) 10, 211, 262, 517, 554, 733
BseRI GAGGAG 1 cut(s) 227
BseXI GCAGC 5 cut(s) 377, 645, 648, 651, 654
BsiHKCI CYCGRG 2 cut(s) 103, 472
BsiSI CCGG 1 cut(s) 479
BslI CCNNNNNNNGG 3 cut(s) 244, 478, 479
BsmAI GTCTC 2 cut(s) 453, 469
Bso31I GGTCTC 1 cut(s) 469
BsoBI CYCGRG 2 cut(s) 103, 472
Bsp143I GATC 3 cut(s) 6, 355, 502
BspLI GGNNCC 1 cut(s) 792
BspTNI GGTCTC 1 cut(s) 469
BsrI ACTGG 6 cut(s) 10, 211, 262, 517, 554, 733
BssECI CCNNGG 2 cut(s) 416, 479
BssMI GATC 3 cut(s) 6, 355, 502
BssSI CACGAG 1 cut(s) 239
Bst2BI CACGAG 1 cut(s) 239
Bst2UI CCWGG 2 cut(s) 338, 417
Bst4CI ACNGT 3 cut(s) 160, 711, 741
BstC8I GCNNGC 3 cut(s) 195, 610, 614
BstEII GGTNACC 1 cut(s) 230
BstF5I GGATG 1 cut(s) 426
BstH2I RGCGCY 1 cut(s) 111
BstHHI GCGC 1 cut(s) 110
BstKTI GATC 3 cut(s) 9, 358, 505
BstMAI GTCTC 2 cut(s) 453, 469
BstMBI GATC 3 cut(s) 6, 355, 502
BstMWI GCNNNNNNNGC 3 cut(s) 114, 639, 642
BstNI CCWGG 2 cut(s) 338, 417
BstPI GGTNACC 1 cut(s) 230
BstSCI CCNGG 3 cut(s) 336, 415, 478
BstSFI CTRYAG 1 cut(s) 87
BstV1I GCAGC 5 cut(s) 377, 645, 648, 651, 654
BstV2I GAAGAC 1 cut(s) 291
BtsCI GGATG 1 cut(s) 426
BtsIMutI CAGTG 2 cut(s) 204, 645
Cac8I GCNNGC 3 cut(s) 195, 610, 614
CfoI GCGC 1 cut(s) 110
Cfr13I GGNCC 1 cut(s) 273
CsiI ACCWGGT 1 cut(s) 336
CspCI CAANNNNNGTGG 2 cut(s) 265, 300
CviAII CATG 2 cut(s) 307, 783
CviJI RGCY 7 cut(s) 265, 387, 565, 582, 608, 612, 793
CviKI_1 RGCY 7 cut(s) 265, 387, 565, 582, 608, 612, 793
DpnI GATC 3 cut(s) 8, 357, 504
DpnII GATC 3 cut(s) 6, 355, 502
Eco31I GGTCTC 1 cut(s) 469
Eco47I GGWCC 1 cut(s) 273
Eco88I CYCGRG 2 cut(s) 103, 472
Eco91I GGTNACC 1 cut(s) 230
EcoO65I GGTNACC 1 cut(s) 230
EcoRII CCWGG 2 cut(s) 336, 415
FaeI CATG 2 cut(s) 310, 786
FatI CATG 2 cut(s) 306, 782
FauNDI CATATG 2 cut(s) 131, 586
FbaI TGATCA 1 cut(s) 355
FblI GTMKAC 1 cut(s) 658
Fnu4HI GCNGC 5 cut(s) 366, 634, 637, 640, 643
FokI GGATG 1 cut(s) 433
Fsp4HI GCNGC 5 cut(s) 366, 634, 637, 640, 643
GlaI GCGC 1 cut(s) 109
GluI GCNGC 5 cut(s) 366, 634, 637, 640, 643
GsuI CTGGAG 3 cut(s) 228, 279, 750
HaeII RGCGCY 1 cut(s) 111
HapII CCGG 1 cut(s) 479
HhaI GCGC 1 cut(s) 110
Hin1II CATG 2 cut(s) 310, 786
Hin6I GCGC 1 cut(s) 108
HinP1I GCGC 1 cut(s) 108
HincII GTYRAC 2 cut(s) 447, 659
HindII GTYRAC 2 cut(s) 447, 659
HinfI GANTC 3 cut(s) 25, 326, 350
HpaII CCGG 1 cut(s) 479
HphI GGTGA 1 cut(s) 727
Hpy166II GTNNAC 3 cut(s) 276, 447, 659
Hpy188I TCNGA 4 cut(s) 355, 360, 507, 790
Hpy188III TCNNGA 2 cut(s) 29, 330
Hpy8I GTNNAC 3 cut(s) 276, 447, 659
HpyAV CCTTC 2 cut(s) 760, 789
HpyCH4III ACNGT 3 cut(s) 160, 711, 741
HpyCH4V TGCA 1 cut(s) 707
HpyF10VI GCNNNNNNNGC 3 cut(s) 114, 639, 642
Hsp92II CATG 2 cut(s) 310, 786
HspAI GCGC 1 cut(s) 108
Ksp22I TGATCA 1 cut(s) 355
Kzo9I GATC 3 cut(s) 6, 355, 502
LmnI GCTCC 1 cut(s) 790
Lsp1109I GCAGC 5 cut(s) 377, 645, 648, 651, 654
LweI GCATC 1 cut(s) 411
MabI ACCWGGT 1 cut(s) 336
MaeIII GTNAC 5 cut(s) 98, 145, 230, 253, 735
MalI GATC 3 cut(s) 8, 357, 504
MboI GATC 3 cut(s) 6, 355, 502
MboII GAAGA 3 cut(s) 236, 291, 328
MfeI CAATTG 1 cut(s) 678
MluCI AATT 7 cut(s) 56, 62, 199, 436, 670, 678, 700
MlyI GAGTC 1 cut(s) 335
MmeI TCCRAC 2 cut(s) 225, 768
MnlI CCTC 5 cut(s) 15, 198, 245, 248, 606
MseI TTAA 2 cut(s) 344, 669
MslI CAYNNNNRTG 1 cut(s) 311
MspI CCGG 1 cut(s) 479
MspR9I CCNGG 3 cut(s) 338, 417, 480
MunI CAATTG 1 cut(s) 678
MvaI CCWGG 2 cut(s) 338, 417
MwoI GCNNNNNNNGC 3 cut(s) 114, 639, 642
NciI CCSGG 1 cut(s) 480
NdeI CATATG 2 cut(s) 131, 586
NdeII GATC 3 cut(s) 6, 355, 502
NlaIII CATG 2 cut(s) 310, 786
NlaIV GGNNCC 1 cut(s) 792
NmuCI GTSAC 1 cut(s) 145
PfeI GAWTC 2 cut(s) 25, 350
PkrI GCNGC 5 cut(s) 367, 635, 638, 641, 644
PleI GAGTC 1 cut(s) 334
PpsI GAGTC 1 cut(s) 334
PshBI ATTAAT 1 cut(s) 669
Psp6I CCWGG 2 cut(s) 336, 415
PspEI GGTNACC 1 cut(s) 230
PspGI CCWGG 2 cut(s) 336, 415
PspN4I GGNNCC 1 cut(s) 792
PspPI GGNCC 1 cut(s) 273
RseI CAYNNNNRTG 1 cut(s) 311
SalI GTCGAC 1 cut(s) 657
SaqAI TTAA 2 cut(s) 344, 669
SatI GCNGC 5 cut(s) 366, 634, 637, 640, 643
Sau3AI GATC 3 cut(s) 6, 355, 502
Sau96I GGNCC 1 cut(s) 273
SchI GAGTC 1 cut(s) 335
ScrFI CCNGG 3 cut(s) 338, 417, 480
SetI ASST 7 cut(s) 147, 190, 237, 339, 389, 610, 691
SexAI ACCWGGT 1 cut(s) 336
SfaNI GCATC 1 cut(s) 411
SfcI CTRYAG 1 cut(s) 87
SinI GGWCC 1 cut(s) 273
SmiMI CAYNNNNRTG 1 cut(s) 311
Sse9I AATT 7 cut(s) 56, 62, 199, 436, 670, 678, 700
SspI AATATT 1 cut(s) 373
StyD4I CCNGG 3 cut(s) 336, 415, 478
TaaI ACNGT 3 cut(s) 160, 711, 741
TaqI TCGA 3 cut(s) 222, 501, 658
TasI AATT 7 cut(s) 56, 62, 199, 436, 670, 678, 700
TfiI GAWTC 2 cut(s) 25, 350
Tru1I TTAA 2 cut(s) 344, 669
Tru9I TTAA 2 cut(s) 344, 669
TscAI CASTG 2 cut(s) 211, 652
TseFI GTSAC 1 cut(s) 145
TseI GCWGC 5 cut(s) 365, 633, 636, 639, 642
Tsp45I GTSAC 1 cut(s) 145
TspDTI ATGAA 5 cut(s) 400, 545, 603, 771, 771
TspRI CASTG 2 cut(s) 211, 652
VpaK11BI GGWCC 1 cut(s) 273
VspI ATTAAT 1 cut(s) 669
XapI RAATTY 2 cut(s) 56, 436
XmiI GTMKAC 1 cut(s) 658
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.