Rh2AG552300

G-type lectin S-receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000412
Physical Location & Seq
Reverse (-)
78303512 .. 78304716
1205 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG552300.1

Sequence Viewer

Length: 993 bp
ATGATTGTGAAGATAATGGAGTCTGGAAACCTGGTGTTAAGGGATACTGGTGAGTTGACAGTGGATCCTTTGTGGCAGAGCCTTCAAAATCCAACTGATACATTCATTCCTGGGATGCTAATGGATAGTAACTTGGAGTTGACTTCATGGAGCGACGAAGATGACCCAAGAACTGGGAACTTCACCTTCAAACTAGATCAACAAAGTCAGTATATTATCTTAAAAAATTCAATGCCTTACTGGAAAACGGGAGGACCAGGTGAGTTTTTCAGGTCAGTTGAAATGCCTCGGGTAGTAACTTACTTATTATCAAATTTCAGCAACAGCACTGTTACAAGTATACAGATTGGTAAGTTCAACAAGAGCACTGTTACTAGTCCTCCCCAATTTGATTACACTCATGCAAGATTGGTGATATCCCATAGTGGAGAGCTGAAGATTTCAACATGGATTGAAGACTTGCAGTGGGTTCTGGTTTGGTCAGAGCCAAAAGATCAATGCAGTGTATATAATGCTTGTGGGAACTTTGGCAGCTGTAATACTAATAATAACCTGGTGGTGTGCAAATGTTTGCCAGGTTTTAAGCCCCAGTCTCTAGATAAATGGACTTCTGGAGACTTCTCAGATGGATGCACAAGAGACTTGTCAATATGTGGGCATGATGACACCTTTTTGAGTTTGAAGATGATGAAAGTGGGAAACCCAGACACAGAGATTGTTGTTTACGATGAAATAGAATGCAAGAACAAGTGCCTCAACAGCTGCCAGTGCCAGGCATACTTATATGCTGCCGCACCTGTAAGCATAACTCAAAGGGATCTTCGTCAAACTTCCTTGTGCAGGGTATGGCTTAAGGACTTAAATAATCTTGTGGAAGAGTATGACAATAGTTATGACATTGCTGCTCGAGTTGCCTTGTCTGATATAGAATCAACTATAAGAGACTGCAACCCTTGTGGCACAGTCGCACAACTACAATTCCTTATCCTCTGA

Protein Analysis

330

Amino Acids

37.2

Weight (kDa)

4.69

Isoelectric Point (pI)

37.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 2 - 45 1.4e-07 D-mannose binding lectin
S_locus_glycop PF00954 118 - 197 2.9e-20 S-locus glycoprotein domain
PAN_2 PF08276 218 - 289 6.8e-11 PAN-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000412)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03230 AT4G03230 AT4G03230 AT4G03230 AT4G03230 AT4G03230 AT4G03230 AT4G03230
fragaria_vesca FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44243 FvH4_6g44244 FvH4_6g44245 FvH4_6g44245 FvH4_6g44260
malus_domestica MD04G1084700.v1.1 MD09G1099700.v1.1 MD09G1099800.v1.1 MD09G1099900.v1.1 MD09G1100000.v1.1 MD09G1100100.v1.1 MD17G1087900.v1.1
prunus_persica Prupe.3G226000_v2.0.a1 Prupe.3G226200_v2.0.a1 Prupe.3G226300_v2.0.a1 Prupe.3G226300_v2.0.a1 Prupe.3G226600_v2.0.a1 Prupe.3G226700_v2.0.a1
pyrus_communis pycom02g23070 pycom07g15320 pycom09g02310 pycom09g02330 pycom09g02340 pycom09g02350 pycom09g02360 pycom09g02400 pycom09g02410 pycom09g02430 pycom10g07020 pycom17g08490
rosa_chinensis RchiOBHm_Chr1g0328701 RchiOBHm_Chr2g0161021 RchiOBHm_Chr2g0161031 RchiOBHm_Chr2g0161081 RchiOBHm_Chr2g0161101
rosa_laevigata RLG00000021249 RLG00000021250 RLG00000021251 RLG00000021253 RLG00000021257 RLG00000029922
rosa_multiflora Rmu_sc0000955.1_g000023 Rmu_sc0000955.1_g000025 Rmu_sc0000955.1_g000041 Rmu_sc0002312.1_g000012 Rmu_sc0002481.1_g000021 Rmu_sc0002481.1_g000026 Rmu_sc0002481.1_g000028 Rmu_sc0002481.1_g000039 Rmu_sc0006420.1_g000017
rosa_roxburghii Rroxscaffold_2G00089160 Rroxscaffold_2G00089200 Rroxscaffold_2G00089220 Rroxscaffold_2G00089270 Rroxscaffold_2G00089300 Rroxscaffold_4G00321430
rosa_rugosa Rorug02G0485900 Rorug02G0486100 Rorug03G0345100
rosa_samantha Rh1AG094100 Rh1DG097200 Rh2AG552000 Rh2AG552100 Rh2AG552200 Rh2AG552300 Rh2AG552500 Rh2BG566400 Rh2BG566500 Rh2CG535800 Rh2CG535900 Rh2CG536100 Rh2CG536200 Rh2DG575000 Rh2DG575100 Rh2DG575400 Rh2DG575500 Rh2DG575600 Rh4AG077200 Rh4CG082400
rosa_wichuraiana Rw2G045690 Rw2G045700 Rw2G045710 Rw4G006230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 173
AccI GTMKAC 1 cut(s) 340
AciI CCGC 1 cut(s) 792
AclWI GGATC 3 cut(s) 59, 72, 825
AcsI RAATTY 2 cut(s) 226, 313
AcuI CTGAAG 1 cut(s) 455
AfiI CCNNNNNNNGG 3 cut(s) 173, 772, 840
AflII CTTAAG 1 cut(s) 851
AgsI TTSAA 8 cut(s) 86, 190, 231, 281, 358, 444, 455, 682
AhlI ACTAGT 1 cut(s) 374
AjnI CCWGG 6 cut(s) 30, 109, 256, 552, 574, 771
AluBI AGCT 3 cut(s) 433, 534, 762
AluI AGCT 3 cut(s) 433, 534, 762
Alw21I GWGCWC 1 cut(s) 368
Alw26I GTCTC 4 cut(s) 597, 609, 633, 936
AlwI GGATC 3 cut(s) 59, 72, 825
Ama87I CYCGRG 2 cut(s) 288, 906
ApeKI GCWGC 4 cut(s) 531, 762, 788, 902
ApoI RAATTY 2 cut(s) 226, 313
AspS9I GGNCC 1 cut(s) 254
AsuHPI GGTGA 4 cut(s) 62, 175, 272, 424
AvaI CYCGRG 2 cut(s) 288, 906
AvaII GGWCC 1 cut(s) 254
BamHI GGATCC 1 cut(s) 64
BbsI GAAGAC 1 cut(s) 462
Bbv12I GWGCWC 1 cut(s) 368
BbvI GCAGC 4 cut(s) 543, 749, 775, 889
BccI CCATC 1 cut(s) 620
BciT130I CCWGG 6 cut(s) 32, 111, 258, 554, 576, 773
BciVI GTATCC 1 cut(s) 37
BcoDI GTCTC 4 cut(s) 597, 609, 633, 936
BcuI ACTAGT 1 cut(s) 374
BfaI CTAG 3 cut(s) 194, 375, 596
BfrI CTTAAG 1 cut(s) 851
BfuI GTATCC 1 cut(s) 37
BisI GCNGC 5 cut(s) 532, 763, 789, 792, 903
BlsI GCNGC 5 cut(s) 533, 764, 790, 793, 904
Bme1390I CCNGG 6 cut(s) 32, 111, 258, 554, 576, 773
Bme18I GGWCC 1 cut(s) 254
BmeT110I CYCGRG 2 cut(s) 288, 906
BmgT120I GGNCC 1 cut(s) 254
BmiI GGNNCC 1 cut(s) 66
BmrFI CCNGG 6 cut(s) 32, 111, 258, 554, 576, 773
BmrI ACTGGG 2 cut(s) 183, 583
BmsI GCATC 2 cut(s) 105, 620
BmuI ACTGGG 2 cut(s) 183, 583
BpiI GAAGAC 1 cut(s) 462
BpmI CTGGAG 1 cut(s) 633
BsaJI CCNNGG 2 cut(s) 110, 287
BsaXI ACNNNNNCTCC 2 cut(s) 364, 394
Bsc4I CCNNNNNNNGG 3 cut(s) 173, 772, 840
Bse1I ACTGG 5 cut(s) 52, 178, 245, 589, 766
Bse3DI GCAATG 1 cut(s) 897
BseBI CCWGG 6 cut(s) 32, 111, 258, 554, 576, 773
BseDI CCNNGG 2 cut(s) 110, 287
BseGI GGATG 2 cut(s) 120, 635
BseLI CCNNNNNNNGG 3 cut(s) 173, 772, 840
BseMI GCAATG 1 cut(s) 897
BseMII CTCAG 1 cut(s) 636
BseNI ACTGG 5 cut(s) 52, 178, 245, 589, 766
BseXI GCAGC 4 cut(s) 543, 749, 775, 889
BsgI GTGCAG 1 cut(s) 859
BsiHKAI GWGCWC 1 cut(s) 368
BsiHKCI CYCGRG 2 cut(s) 288, 906
BslI CCNNNNNNNGG 3 cut(s) 173, 772, 840
BsmAI GTCTC 4 cut(s) 597, 609, 633, 936
BsmI GAATGC 1 cut(s) 743
BsoBI CYCGRG 2 cut(s) 288, 906
Bsp1286I GDGCHC 1 cut(s) 368
Bsp143I GATC 4 cut(s) 64, 196, 493, 817
BspACI CCGC 1 cut(s) 792
BspCNI CTCAG 1 cut(s) 635
BspLI GGNNCC 1 cut(s) 66
BspPI GGATC 3 cut(s) 59, 72, 825
BspTI CTTAAG 1 cut(s) 851
BsrDI GCAATG 1 cut(s) 897
BsrI ACTGG 5 cut(s) 52, 178, 245, 589, 766
BssECI CCNNGG 2 cut(s) 110, 287
BssMI GATC 4 cut(s) 64, 196, 493, 817
BssNAI GTATAC 1 cut(s) 341
Bst1107I GTATAC 1 cut(s) 341
Bst2UI CCWGG 6 cut(s) 32, 111, 258, 554, 576, 773
Bst4CI ACNGT 4 cut(s) 61, 331, 370, 964
Bst6I CTCTTC 1 cut(s) 870
BstAFI CTTAAG 1 cut(s) 851
BstDEI CTNAG 1 cut(s) 622
BstENI CCTNNNNNAGG 1 cut(s) 838
BstF5I GGATG 2 cut(s) 120, 635
BstKTI GATC 4 cut(s) 67, 199, 496, 820
BstMAI GTCTC 4 cut(s) 597, 609, 633, 936
BstMBI GATC 4 cut(s) 64, 196, 493, 817
BstMWI GCNNNNNNNGC 3 cut(s) 759, 768, 911
BstNI CCWGG 6 cut(s) 32, 111, 258, 554, 576, 773
BstSCI CCNGG 6 cut(s) 30, 109, 256, 552, 574, 771
BstV1I GCAGC 4 cut(s) 543, 749, 775, 889
BstV2I GAAGAC 1 cut(s) 462
BstX2I RGATCY 2 cut(s) 64, 817
BstYI RGATCY 2 cut(s) 64, 817
BstZ17I GTATAC 1 cut(s) 341
BsuI GTATCC 1 cut(s) 37
BtsCI GGATG 2 cut(s) 120, 635
BtsI GCAGTG 2 cut(s) 470, 508
BtsIMutI CAGTG 6 cut(s) 66, 327, 366, 470, 508, 773
Cfr13I GGNCC 1 cut(s) 254
CsiI ACCWGGT 3 cut(s) 30, 256, 552
CspCI CAANNNNNGTGG 2 cut(s) 937, 972
CviAII CATG 4 cut(s) 147, 401, 447, 659
CviJI RGCY 7 cut(s) 81, 433, 487, 534, 586, 762, 850
CviKI_1 RGCY 7 cut(s) 81, 433, 487, 534, 586, 762, 850
DdeI CTNAG 1 cut(s) 622
DpnI GATC 4 cut(s) 66, 198, 495, 819
DpnII GATC 4 cut(s) 64, 196, 493, 817
Eam1104I CTCTTC 1 cut(s) 870
EarI CTCTTC 1 cut(s) 870
Eco32I GATATC 1 cut(s) 417
Eco47I GGWCC 1 cut(s) 254
Eco57I CTGAAG 1 cut(s) 455
Eco88I CYCGRG 2 cut(s) 288, 906
EcoNI CCTNNNNNAGG 1 cut(s) 838
EcoRII CCWGG 6 cut(s) 30, 109, 256, 552, 574, 771
EcoRV GATATC 1 cut(s) 417
FaeI CATG 4 cut(s) 150, 404, 450, 662
FatI CATG 4 cut(s) 146, 400, 446, 658
FblI GTMKAC 1 cut(s) 340
Fnu4HI GCNGC 5 cut(s) 532, 763, 789, 792, 903
FokI GGATG 2 cut(s) 127, 642
Fsp4HI GCNGC 5 cut(s) 532, 763, 789, 792, 903
FspBI CTAG 3 cut(s) 194, 375, 596
GluI GCNGC 5 cut(s) 532, 763, 789, 792, 903
GsuI CTGGAG 1 cut(s) 633
Hin1II CATG 4 cut(s) 150, 404, 450, 662
HincII GTYRAC 2 cut(s) 57, 141
HindII GTYRAC 2 cut(s) 57, 141
HinfI GANTC 2 cut(s) 20, 929
HphI GGTGA 4 cut(s) 62, 175, 272, 424
Hpy166II GTNNAC 4 cut(s) 57, 141, 341, 724
Hpy188I TCNGA 4 cut(s) 484, 625, 922, 992
Hpy188III TCNNGA 3 cut(s) 24, 596, 612
Hpy8I GTNNAC 4 cut(s) 57, 141, 341, 724
Hpy99I CGWCG 1 cut(s) 158
HpyAV CCTTC 2 cut(s) 92, 196
HpyCH4III ACNGT 4 cut(s) 61, 331, 370, 964
HpyCH4V TGCA 8 cut(s) 404, 463, 501, 564, 633, 741, 840, 948
HpyF10VI GCNNNNNNNGC 3 cut(s) 759, 768, 911
HpyF3I CTNAG 1 cut(s) 622
Hsp92II CATG 4 cut(s) 150, 404, 450, 662
Kzo9I GATC 4 cut(s) 64, 196, 493, 817
LmnI GCTCC 1 cut(s) 150
Lsp1109I GCAGC 4 cut(s) 543, 749, 775, 889
LweI GCATC 2 cut(s) 105, 620
MabI ACCWGGT 3 cut(s) 30, 256, 552
MaeI CTAG 3 cut(s) 194, 375, 596
MaeIII GTNAC 4 cut(s) 128, 295, 331, 370
MalI GATC 4 cut(s) 66, 198, 495, 819
MboI GATC 4 cut(s) 64, 196, 493, 817
MboII GAAGA 7 cut(s) 22, 170, 448, 467, 694, 812, 887
MflI RGATCY 2 cut(s) 64, 817
MhlI GDGCHC 1 cut(s) 368
MluCI AATT 4 cut(s) 226, 313, 386, 977
MlyI GAGTC 1 cut(s) 29
MmeI TCCRAC 1 cut(s) 116
MnlI CCTC 4 cut(s) 245, 297, 390, 764
MseI TTAA 5 cut(s) 38, 221, 582, 852, 860
MspA1I CMGCKG 2 cut(s) 534, 762
MspCI CTTAAG 1 cut(s) 851
MspR9I CCNGG 6 cut(s) 32, 111, 258, 554, 576, 773
Mva1269I GAATGC 1 cut(s) 743
MvaI CCWGG 6 cut(s) 32, 111, 258, 554, 576, 773
MwoI GCNNNNNNNGC 3 cut(s) 759, 768, 911
NdeII GATC 4 cut(s) 64, 196, 493, 817
NlaIII CATG 4 cut(s) 150, 404, 450, 662
NlaIV GGNNCC 1 cut(s) 66
PaeR7I CTCGAG 1 cut(s) 906
PctI GAATGC 1 cut(s) 743
PfeI GAWTC 1 cut(s) 929
PflMI CCANNNNNTGG 1 cut(s) 173
PkrI GCNGC 5 cut(s) 533, 764, 790, 793, 904
PleI GAGTC 1 cut(s) 28
PpsI GAGTC 1 cut(s) 28
Psp6I CCWGG 6 cut(s) 30, 109, 256, 552, 574, 771
PspGI CCWGG 6 cut(s) 30, 109, 256, 552, 574, 771
PspN4I GGNNCC 1 cut(s) 66
PspPI GGNCC 1 cut(s) 254
PspXI VCTCGAGB 1 cut(s) 906
PsuI RGATCY 2 cut(s) 64, 817
PvuII CAGCTG 2 cut(s) 534, 762
SaqAI TTAA 5 cut(s) 38, 221, 582, 852, 860
SatI GCNGC 5 cut(s) 532, 763, 789, 792, 903
Sau3AI GATC 4 cut(s) 64, 196, 493, 817
Sau96I GGNCC 1 cut(s) 254
SchI GAGTC 1 cut(s) 29
ScrFI CCNGG 6 cut(s) 32, 111, 258, 554, 576, 773
SduI GDGCHC 1 cut(s) 368
SexAI ACCWGGT 3 cut(s) 30, 256, 552
SfaNI GCATC 2 cut(s) 105, 620
Sfr274I CTCGAG 1 cut(s) 906
SinI GGWCC 1 cut(s) 254
SlaI CTCGAG 1 cut(s) 906
SmlI CTYRAG 2 cut(s) 851, 906
SmoI CTYRAG 2 cut(s) 851, 906
SpeI ACTAGT 1 cut(s) 374
Sse9I AATT 4 cut(s) 226, 313, 386, 977
SsiI CCGC 1 cut(s) 792
SspMI CTAG 3 cut(s) 194, 375, 596
StyD4I CCNGG 6 cut(s) 30, 109, 256, 552, 574, 771
TaaI ACNGT 4 cut(s) 61, 331, 370, 964
TaqI TCGA 1 cut(s) 907
TasI AATT 4 cut(s) 226, 313, 386, 977
TauI GCSGC 1 cut(s) 794
TfiI GAWTC 1 cut(s) 929
Tru1I TTAA 5 cut(s) 38, 221, 582, 852, 860
Tru9I TTAA 5 cut(s) 38, 221, 582, 852, 860
TscAI CASTG 6 cut(s) 66, 334, 373, 470, 508, 773
TseI GCWGC 4 cut(s) 531, 762, 788, 902
TspDTI ATGAA 4 cut(s) 94, 135, 704, 744
TspRI CASTG 6 cut(s) 66, 334, 373, 470, 508, 773
Van91I CCANNNNNTGG 1 cut(s) 173
Vha464I CTTAAG 1 cut(s) 851
VpaK11BI GGWCC 1 cut(s) 254
XagI CCTNNNNNAGG 1 cut(s) 838
XapI RAATTY 2 cut(s) 226, 313
XbaI TCTAGA 1 cut(s) 595
XhoI CTCGAG 1 cut(s) 906
XmiI GTMKAC 1 cut(s) 340
XspI CTAG 3 cut(s) 194, 375, 596
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.